AT1G09030

factor y, subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0015296
Physical Location & Seq
Reverse (-)
2908611 .. 2909032
422 bp
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UTR
Exon/CDS
Intron
AT1G09030.1

Sequence Viewer

Length: 420 bp
ATGACAGACGAAGATAGATTGTTGCCAATAGCCAATGTAGGGAGACTTATGAAGCAAATCCTACCATCAAATGCAAAGATCTCAAAAGAAGCAAAACAAACAGTTCAAGAATGTGCAACAGAGTTCATAAGCTTTGTTACATGCGAAGCATCAGAGAAGTGCCACAGGGAGAATCGGAAGACGGTGAATGGAGACGACATCTGGTGGGCTCTCAGCACTCTCGGCCTCGATAACTATGCTGACGCCGTGGGTAGGCATCTTCACAAGTACCGTGAAGCCGAGAGAGAAAGAACTGAGCACAACAAAGGTAGCAATGATAGTGGGAATGAGAAAGAAACCAACACTAGAAGTGATGTACAGAACCAATCGACAAAATTTATTAGAGTTGTTGAGAAGGGAAGCAGCTCCTCGGCCCGTTGA

Protein Analysis

139

Amino Acids

15.74

Weight (kDa)

6.91

Isoelectric Point (pI)

39.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CBFD_NFYB_HMF PF00808 7 - 71 4.3e-26 Histone-like transcription factor (CBF/NF-Y) and archaeal histone
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015296)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G09030
fragaria_vesca FvH4_6g06220
malus_domestica MD04G1203300.v1.1 MD12G1217100.v1.1
prunus_persica Prupe.6G323400_v2.0.a1
pyrus_communis pycom04g17970
rosa_chinensis RchiOBHm_Chr3g0455241
rosa_laevigata RLG00000025374
rosa_multiflora Rmu_sc0002169.1_g000034
rosa_roxburghii Rroxscaffold_6G00424430
rosa_rugosa Rorug03G0005500
rosa_samantha Rh3AG065500 Rh3BG067600 Rh3CG066100 Rh3DG067700
rosa_wichuraiana Rw3G005160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 374
AcyI GRCGYC 1 cut(s) 243
AfaI GTAC 2 cut(s) 269, 357
AfiI CCNNNNNNNGG 2 cut(s) 39, 252
AgsI TTSAA 1 cut(s) 107
AluBI AGCT 2 cut(s) 132, 405
AluI AGCT 2 cut(s) 132, 405
Alw21I GWGCWC 1 cut(s) 300
Alw26I GTCTC 2 cut(s) 37, 186
AoxI GGCC 2 cut(s) 223, 411
ApeKI GCWGC 1 cut(s) 402
ApoI RAATTY 1 cut(s) 374
AspS9I GGNCC 1 cut(s) 412
AsuHPI GGTGA 1 cut(s) 196
BanII GRGCYC 1 cut(s) 211
BbsI GAAGAC 1 cut(s) 185
Bbv12I GWGCWC 1 cut(s) 300
BbvI GCAGC 1 cut(s) 414
BccI CCATC 1 cut(s) 73
BceAI ACGGC 1 cut(s) 230
BcgI CGANNNNNNTGC 2 cut(s) 218, 252
BcoDI GTCTC 2 cut(s) 37, 186
BfaI CTAG 1 cut(s) 345
BglII AGATCT 1 cut(s) 78
BisI GCNGC 1 cut(s) 403
BlsI GCNGC 1 cut(s) 404
BmgT120I GGNCC 1 cut(s) 412
BmsI GCATC 2 cut(s) 158, 265
BpiI GAAGAC 1 cut(s) 185
BsaHI GRCGYC 1 cut(s) 243
BsaJI CCNNGG 2 cut(s) 246, 408
Bsc4I CCNNNNNNNGG 2 cut(s) 39, 252
Bse3DI GCAATG 1 cut(s) 319
BseDI CCNNGG 2 cut(s) 246, 408
BseLI CCNNNNNNNGG 2 cut(s) 39, 252
BseMI GCAATG 1 cut(s) 319
BseMII CTCAG 2 cut(s) 226, 285
BseRI GAGGAG 1 cut(s) 397
BseXI GCAGC 1 cut(s) 414
BshFI GGCC 2 cut(s) 225, 413
BsiHKAI GWGCWC 1 cut(s) 300
BslI CCNNNNNNNGG 2 cut(s) 39, 252
BsmAI GTCTC 2 cut(s) 37, 186
BsmBI CGTCTC 1 cut(s) 186
BsnI GGCC 2 cut(s) 225, 413
Bsp1286I GDGCHC 2 cut(s) 211, 300
Bsp1407I TGTACA 1 cut(s) 355
Bsp143I GATC 1 cut(s) 78
BspANI GGCC 2 cut(s) 225, 413
BspCNI CTCAG 2 cut(s) 225, 286
BsrDI GCAATG 1 cut(s) 319
BsrGI TGTACA 1 cut(s) 355
BssECI CCNNGG 2 cut(s) 246, 408
BssMI GATC 1 cut(s) 78
BssNI GRCGYC 1 cut(s) 243
Bst4CI ACNGT 3 cut(s) 103, 184, 272
BstACI GRCGYC 1 cut(s) 243
BstAUI TGTACA 1 cut(s) 355
BstDEI CTNAG 2 cut(s) 212, 294
BstDSI CCRYGG 1 cut(s) 246
BstKTI GATC 1 cut(s) 81
BstMAI GTCTC 2 cut(s) 37, 186
BstMBI GATC 1 cut(s) 78
BstMWI GCNNNNNNNGC 1 cut(s) 222
BstNSI RCATGY 1 cut(s) 144
BstV1I GCAGC 1 cut(s) 414
BstV2I GAAGAC 1 cut(s) 185
BstX2I RGATCY 1 cut(s) 78
BstYI RGATCY 1 cut(s) 78
BsuRI GGCC 2 cut(s) 225, 413
BtgI CCRYGG 1 cut(s) 246
Cfr13I GGNCC 1 cut(s) 412
CseI GACGC 1 cut(s) 251
Csp6I GTAC 2 cut(s) 268, 356
CspCI CAANNNNNGTGG 2 cut(s) 301, 336
CviAII CATG 1 cut(s) 141
CviJI RGCY 7 cut(s) 32, 132, 209, 225, 278, 405, 413
CviKI_1 RGCY 7 cut(s) 32, 132, 209, 225, 278, 405, 413
CviQI GTAC 2 cut(s) 268, 356
DdeI CTNAG 2 cut(s) 212, 294
DpnI GATC 1 cut(s) 80
DpnII GATC 1 cut(s) 78
Eco24I GRGCYC 1 cut(s) 211
EcoT38I GRGCYC 1 cut(s) 211
Esp3I CGTCTC 1 cut(s) 186
FaeI CATG 1 cut(s) 144
FaiI YATR 4 cut(s) 50, 128, 142, 237
FatI CATG 1 cut(s) 140
Fnu4HI GCNGC 1 cut(s) 403
FriOI GRGCYC 1 cut(s) 211
Fsp4HI GCNGC 1 cut(s) 403
FspBI CTAG 1 cut(s) 345
GluI GCNGC 1 cut(s) 403
HaeIII GGCC 2 cut(s) 225, 413
HgaI GACGC 1 cut(s) 251
Hin1I GRCGYC 1 cut(s) 243
Hin1II CATG 1 cut(s) 144
HindIII AAGCTT 1 cut(s) 130
HinfI GANTC 1 cut(s) 172
HphI GGTGA 1 cut(s) 196
Hpy188I TCNGA 2 cut(s) 154, 177
Hpy188III TCNNGA 1 cut(s) 107
HpyAV CCTTC 1 cut(s) 388
HpyCH4III ACNGT 3 cut(s) 103, 184, 272
HpyCH4V TGCA 2 cut(s) 74, 116
HpyF10VI GCNNNNNNNGC 1 cut(s) 222
HpyF3I CTNAG 2 cut(s) 212, 294
Hsp92I GRCGYC 1 cut(s) 243
Hsp92II CATG 1 cut(s) 144
Kzo9I GATC 1 cut(s) 78
LmnI GCTCC 1 cut(s) 410
LpnPI CCDG 2 cut(s) 151, 187
Lsp1109I GCAGC 1 cut(s) 414
LweI GCATC 2 cut(s) 158, 265
MaeI CTAG 1 cut(s) 345
MaeIII GTNAC 1 cut(s) 136
MalI GATC 1 cut(s) 80
MboI GATC 1 cut(s) 78
MboII GAAGA 3 cut(s) 23, 190, 251
MflI RGATCY 1 cut(s) 78
MhlI GDGCHC 2 cut(s) 211, 300
MluCI AATT 1 cut(s) 374
MnlI CCTC 2 cut(s) 236, 418
MwoI GCNNNNNNNGC 1 cut(s) 222
NdeII GATC 1 cut(s) 78
NlaIII CATG 1 cut(s) 144
NmeAIII GCCGAG 3 cut(s) 201, 304, 389
NspI RCATGY 1 cut(s) 144
PfeI GAWTC 1 cut(s) 172
PkrI GCNGC 1 cut(s) 404
PspPI GGNCC 1 cut(s) 412
PsuI RGATCY 1 cut(s) 78
RsaI GTAC 2 cut(s) 269, 357
RsaNI GTAC 2 cut(s) 268, 356
SatI GCNGC 1 cut(s) 403
Sau3AI GATC 1 cut(s) 78
Sau96I GGNCC 1 cut(s) 412
SduI GDGCHC 2 cut(s) 211, 300
SetI ASST 3 cut(s) 134, 310, 407
SfaNI GCATC 2 cut(s) 158, 265
Sse9I AATT 1 cut(s) 374
SspMI CTAG 1 cut(s) 345
TaaI ACNGT 3 cut(s) 103, 184, 272
TaqI TCGA 2 cut(s) 228, 368
TasI AATT 1 cut(s) 374
TatI WGTACW 1 cut(s) 355
TfiI GAWTC 1 cut(s) 172
TseI GCWGC 1 cut(s) 402
TspDTI ATGAA 2 cut(s) 65, 115
XapI RAATTY 1 cut(s) 374
XceI RCATGY 1 cut(s) 144
XspI CTAG 1 cut(s) 345
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.