FvH4_6g06220

Nuclear transcription factor Y subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0015296
Physical Location & Seq
Reverse (-)
3560763 .. 3561230
468 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g06220.t1

Sequence Viewer

Length: 468 bp
ATGGTTGATCATGAGGAAGAACAAGATCGGTTGCTGCCAATTGCAAACGTAGGGAGGATCATGAAGCAAGGTCTTCCCCAAAGAGCAAAAGTCTCCAAGGAAGCCAAGCAAAGGATGCAAGAGTGTGCAACTGAGTTCCTAAGTTTTGTGACGGCAGAGGCTTCTGACAAGTGTCACAAAGAGAATCGAAAGACGGTGAATGGGGACGACATCTGTTGGGCTATGAGTGCTCTTGGATTTGATAACTATGCTGAGGCTACAACAAGGTACTTGAACAAGTATAGGGAAGCTGAGAGACACAGATTAGCTGCTAACCAAAGCAATATTAATATTAATACTAGCTCATCCAGCCAATTAGAGATCAGAGAGGGAGATCAGCTGCCAATCTATTTAAGTGGAACTCAGCCTTCGAATCTGGAGTTTAGGATTCTTGAGATGGGTGACAACTCCTTTGCCAAGCCATCTTGA

Protein Analysis

156

Amino Acids

17.59

Weight (kDa)

5.67

Isoelectric Point (pI)

52.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CBFD_NFYB_HMF PF00808 11 - 75 2.1e-24 Histone-like transcription factor (CBF/NF-Y) and archaeal histone
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015296)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G09030
fragaria_vesca FvH4_6g06220
malus_domestica MD04G1203300.v1.1 MD12G1217100.v1.1
prunus_persica Prupe.6G323400_v2.0.a1
pyrus_communis pycom04g17970
rosa_chinensis RchiOBHm_Chr3g0455241
rosa_laevigata RLG00000025374
rosa_multiflora Rmu_sc0002169.1_g000034
rosa_roxburghii Rroxscaffold_6G00424430
rosa_rugosa Rorug03G0005500
rosa_samantha Rh3AG065500 Rh3BG067600 Rh3CG066100 Rh3DG067700
rosa_wichuraiana Rw3G005160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 65
AfaI GTAC 1 cut(s) 269
AfiI CCNNNNNNNGG 1 cut(s) 111
AgsI TTSAA 1 cut(s) 274
AluBI AGCT 4 cut(s) 290, 308, 342, 379
AluI AGCT 4 cut(s) 290, 308, 342, 379
Alw21I GWGCWC 1 cut(s) 232
Alw26I GTCTC 2 cut(s) 97, 289
AlwI GGATC 1 cut(s) 65
ApeKI GCWGC 3 cut(s) 34, 308, 379
ArsI GACNNNNNNTTYG 2 cut(s) 434, 466
AseI ATTAAT 2 cut(s) 327, 333
AsuHPI GGTGA 2 cut(s) 208, 452
AsuII TTCGAA 1 cut(s) 410
BbsI GAAGAC 1 cut(s) 65
Bbv12I GWGCWC 1 cut(s) 232
BbvCI CCTCAGC 1 cut(s) 252
BbvI GCAGC 3 cut(s) 21, 295, 366
BccI CCATC 1 cut(s) 430
BceAI ACGGC 1 cut(s) 168
BclI TGATCA 1 cut(s) 7
BcoDI GTCTC 2 cut(s) 97, 289
BfaI CTAG 1 cut(s) 339
BisI GCNGC 3 cut(s) 35, 309, 380
BlsI GCNGC 3 cut(s) 36, 310, 381
BmsI GCATC 1 cut(s) 105
BoxI GACNNNNGTC 1 cut(s) 171
BpiI GAAGAC 1 cut(s) 65
BpmI CTGGAG 1 cut(s) 437
Bpu10I CCTNAGC 1 cut(s) 252
Bpu14I TTCGAA 1 cut(s) 410
BpuEI CTTGAG 1 cut(s) 452
BsaJI CCNNGG 1 cut(s) 96
Bsc4I CCNNNNNNNGG 1 cut(s) 111
BseDI CCNNGG 1 cut(s) 96
BseGI GGATG 2 cut(s) 120, 344
BseLI CCNNNNNNNGG 1 cut(s) 111
BseMII CTCAG 4 cut(s) 123, 243, 282, 416
BseXI GCAGC 3 cut(s) 21, 295, 366
BsiHKAI GWGCWC 1 cut(s) 232
BslFI GGGAC 1 cut(s) 218
BslI CCNNNNNNNGG 1 cut(s) 111
BsmAI GTCTC 2 cut(s) 97, 289
BsmFI GGGAC 1 cut(s) 218
Bsp119I TTCGAA 1 cut(s) 410
Bsp1286I GDGCHC 1 cut(s) 232
Bsp143I GATC 5 cut(s) 7, 25, 57, 360, 373
BspCNI CTCAG 4 cut(s) 124, 244, 283, 415
BspHI TCATGA 2 cut(s) 10, 60
BspPI GGATC 1 cut(s) 65
BspT104I TTCGAA 1 cut(s) 410
BssECI CCNNGG 1 cut(s) 96
BssMI GATC 5 cut(s) 7, 25, 57, 360, 373
BssT1I CCWWGG 1 cut(s) 96
Bst4CI ACNGT 1 cut(s) 196
BstAPI GCANNNNNTGC 1 cut(s) 115
BstBI TTCGAA 1 cut(s) 410
BstDEI CTNAG 5 cut(s) 132, 140, 252, 291, 402
BstF5I GGATG 2 cut(s) 120, 344
BstKTI GATC 5 cut(s) 10, 28, 60, 363, 376
BstMAI GTCTC 2 cut(s) 97, 289
BstMBI GATC 5 cut(s) 7, 25, 57, 360, 373
BstMWI GCNNNNNNNGC 3 cut(s) 115, 227, 348
BstPAI GACNNNNGTC 1 cut(s) 171
BstV1I GCAGC 3 cut(s) 21, 295, 366
BstV2I GAAGAC 1 cut(s) 65
BtsCI GGATG 2 cut(s) 120, 344
CciI TCATGA 2 cut(s) 10, 60
Csp6I GTAC 1 cut(s) 268
CviAII CATG 2 cut(s) 11, 61
CviQI GTAC 1 cut(s) 268
DdeI CTNAG 5 cut(s) 132, 140, 252, 291, 402
DpnI GATC 5 cut(s) 9, 27, 59, 362, 375
DpnII GATC 5 cut(s) 7, 25, 57, 360, 373
Eco130I CCWWGG 1 cut(s) 96
EcoT14I CCWWGG 1 cut(s) 96
ErhI CCWWGG 1 cut(s) 96
FaeI CATG 2 cut(s) 14, 64
FaiI YATR 5 cut(s) 12, 62, 224, 249, 282
FaqI GGGAC 1 cut(s) 218
FatI CATG 2 cut(s) 10, 60
FbaI TGATCA 1 cut(s) 7
Fnu4HI GCNGC 3 cut(s) 35, 309, 380
FokI GGATG 2 cut(s) 127, 331
Fsp4HI GCNGC 3 cut(s) 35, 309, 380
FspBI CTAG 1 cut(s) 339
GluI GCNGC 3 cut(s) 35, 309, 380
GsuI CTGGAG 1 cut(s) 437
Hin1II CATG 2 cut(s) 14, 64
HinfI GANTC 3 cut(s) 184, 412, 427
HphI GGTGA 2 cut(s) 208, 452
Hpy188I TCNGA 2 cut(s) 166, 365
Hpy188III TCNNGA 5 cut(s) 11, 61, 416, 431, 465
HpyAV CCTTC 1 cut(s) 417
HpyCH4III ACNGT 1 cut(s) 196
HpyCH4IV ACGT 1 cut(s) 48
HpyCH4V TGCA 3 cut(s) 44, 118, 128
HpyF10VI GCNNNNNNNGC 3 cut(s) 115, 227, 348
HpyF3I CTNAG 5 cut(s) 132, 140, 252, 291, 402
HpySE526I ACGT 1 cut(s) 48
Hsp92II CATG 2 cut(s) 14, 64
Ksp22I TGATCA 1 cut(s) 7
Kzo9I GATC 5 cut(s) 7, 25, 57, 360, 373
LpnPI CCDG 2 cut(s) 361, 401
Lsp1109I GCAGC 3 cut(s) 21, 295, 366
LweI GCATC 1 cut(s) 105
MaeI CTAG 1 cut(s) 339
MaeII ACGT 1 cut(s) 48
MaeIII GTNAC 3 cut(s) 148, 173, 440
MalI GATC 5 cut(s) 9, 27, 59, 362, 375
MboI GATC 5 cut(s) 7, 25, 57, 360, 373
MboII GAAGA 2 cut(s) 29, 65
MfeI CAATTG 1 cut(s) 39
MhlI GDGCHC 1 cut(s) 232
MluCI AATT 2 cut(s) 39, 353
MnlI CCTC 5 cut(s) 7, 48, 151, 247, 361
MseI TTAA 3 cut(s) 327, 333, 392
MspA1I CMGCKG 1 cut(s) 379
MunI CAATTG 1 cut(s) 39
MwoI GCNNNNNNNGC 3 cut(s) 115, 227, 348
NdeII GATC 5 cut(s) 7, 25, 57, 360, 373
NlaIII CATG 2 cut(s) 14, 64
NmuCI GTSAC 3 cut(s) 148, 173, 440
NspV TTCGAA 1 cut(s) 410
PagI TCATGA 2 cut(s) 10, 60
PfeI GAWTC 3 cut(s) 184, 412, 427
PkrI GCNGC 3 cut(s) 36, 310, 381
PshAI GACNNNNGTC 1 cut(s) 171
PshBI ATTAAT 2 cut(s) 327, 333
PvuII CAGCTG 1 cut(s) 379
RsaI GTAC 1 cut(s) 269
RsaNI GTAC 1 cut(s) 268
SaqAI TTAA 3 cut(s) 327, 333, 392
SatI GCNGC 3 cut(s) 35, 309, 380
Sau3AI GATC 5 cut(s) 7, 25, 57, 360, 373
SduI GDGCHC 1 cut(s) 232
SetI ASST 7 cut(s) 51, 73, 269, 292, 310, 344, 381
SfaNI GCATC 1 cut(s) 105
SfuI TTCGAA 1 cut(s) 410
SmlI CTYRAG 1 cut(s) 431
SmoI CTYRAG 1 cut(s) 431
Sse9I AATT 2 cut(s) 39, 353
SspI AATATT 2 cut(s) 325, 331
SspMI CTAG 1 cut(s) 339
StyI CCWWGG 1 cut(s) 96
TaaI ACNGT 1 cut(s) 196
TaiI ACGT 1 cut(s) 51
TaqI TCGA 2 cut(s) 187, 410
TasI AATT 2 cut(s) 39, 353
TfiI GAWTC 3 cut(s) 184, 412, 427
Tru1I TTAA 3 cut(s) 327, 333, 392
Tru9I TTAA 3 cut(s) 327, 333, 392
TseFI GTSAC 3 cut(s) 148, 173, 440
TseI GCWGC 3 cut(s) 34, 308, 379
Tsp45I GTSAC 3 cut(s) 148, 173, 440
TspDTI ATGAA 1 cut(s) 77
VspI ATTAAT 2 cut(s) 327, 333
XspI CTAG 1 cut(s) 339
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.