Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0015296

Physical Location & Seq

Genomic Coordinates Forward (+)

28504283 .. 28505052

Gene Structure 770 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G323400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

ATGGTAGATGAACAAGATGGGTTGCTGCCAATTGCAAACGTGGGTCGCATCATGAAGCAAATTCTTCCCCAAAGAGCCAAAATTTCCAAGGAAGCCAAACAAAGAATGCAAGAGTGTGCAACTGAGTTTCTAAGTTTTGTGACGGCTGAGGCGTCTGACAAGTGTCACAAGGAGAATCGCAAGACCGTGAATGGAGATGACATCTGTTGGGCTCTGAGTGCTCTAGGTTTTGATAACTATGCCCAGGCTACTATAAGGTACTTGCATAAATATAGGGAAGCTGAGAGAGACAAAGCTGCTGCAAATGCTAACAACAACAACCAAAACAAAGCAGCAGATATTATTTTGATGAGCAGCGGCCAAGATATGAACGATATCGGAGATCGAGCAGCAAGTATCTACATGGCAAGTCAACAAGGCCTGCAGGTAGGGGAGCAAACCCAAACTCCAGATTTGGAGTTTCGGCTGCTTGGGAAAGGTGACGGCACCAAGCCATCTGTTGATCAAGAACATAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04612 ko05152 ko05166 map04612 map05152 map05166

Pfam Domains

Protein Families

CBFD_NFYB_HMF

Protein Analysis

173

Amino Acids

19.11

Weight (kDa)

5.41

Isoelectric Point (pI)

37.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015296)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09030
fragaria_vesca	FvH4_6g06220
malus_domestica	MD04G1203300.v1.1 MD12G1217100.v1.1
prunus_persica	Prupe.6G323400_v2.0.a1
pyrus_communis	pycom04g17970
rosa_chinensis	RchiOBHm_Chr3g0455241
rosa_laevigata	RLG00000025374
rosa_multiflora	Rmu_sc0002169.1_g000034
rosa_roxburghii	Rroxscaffold_6G00424430
rosa_rugosa	Rorug03G0005500
rosa_samantha	Rh3AG065500 Rh3BG067600 Rh3CG066100 Rh3DG067700
rosa_wichuraiana	Rw3G005160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	415
AccB1I	GGYRCC	1 cut(s)	485
AciI	CCGC	1 cut(s)	357
AcoI	YGGCCR	1 cut(s)	358
AcsI	RAATTY	2 cut(s)	60, 81
AcyI	GRCGYC	1 cut(s)	152
AfaI	GTAC	1 cut(s)	260
AjnI	CCWGG	1 cut(s)	243
AluBI	AGCT	2 cut(s)	281, 296
AluI	AGCT	2 cut(s)	281, 296
Alw21I	GWGCWC	1 cut(s)	223
Alw26I	GTCTC	1 cut(s)	282
AoxI	GGCC	2 cut(s)	358, 418
ApeKI	GCWGC	7 cut(s)	25, 296, 299, 332, 354, 389, 466
ApoI	RAATTY	2 cut(s)	60, 81
AsuHPI	GGTGA	1 cut(s)	491
BanI	GGYRCC	1 cut(s)	485
BanII	GRGCYC	1 cut(s)	214
Bbv12I	GWGCWC	1 cut(s)	223
BbvCI	CCTCAGC	1 cut(s)	147
BbvI	GCAGC	7 cut(s)	12, 283, 286, 344, 366, 401, 453
BccI	CCATC	2 cut(s)	11, 502
BceAI	ACGGC	2 cut(s)	159, 499
BciT130I	CCWGG	1 cut(s)	245
BclI	TGATCA	1 cut(s)	502
BcoDI	GTCTC	1 cut(s)	282
BfaI	CTAG	1 cut(s)	224
BfmI	CTRYAG	1 cut(s)	422
BfuAI	ACCTGC	1 cut(s)	415
BisI	GCNGC	8 cut(s)	26, 297, 300, 333, 355, 358, 390, 467
BlsI	GCNGC	8 cut(s)	27, 298, 301, 334, 356, 359, 391, 468
Bme1390I	CCNGG	1 cut(s)	245
BmiI	GGNNCC	1 cut(s)	487
BmrFI	CCNGG	1 cut(s)	245
BmsI	GCATC	1 cut(s)	57
BoxI	GACNNNNGTC	1 cut(s)	162
BpmI	CTGGAG	1 cut(s)	432
Bpu10I	CCTNAGC	1 cut(s)	147
BsaHI	GRCGYC	1 cut(s)	152
BsaJI	CCNNGG	2 cut(s)	87, 243
BsaXI	ACNNNNNCTCC	2 cut(s)	430, 460
BseBI	CCWGG	1 cut(s)	245
BseDI	CCNNGG	2 cut(s)	87, 243
BseMII	CTCAG	4 cut(s)	114, 138, 206, 273
BseXI	GCAGC	7 cut(s)	12, 283, 286, 344, 366, 401, 453
BshFI	GGCC	2 cut(s)	360, 420
BshNI	GGYRCC	1 cut(s)	485
BsiHKAI	GWGCWC	1 cut(s)	223
BsmAI	GTCTC	1 cut(s)	282
BsmI	GAATGC	1 cut(s)	111
BsnI	GGCC	2 cut(s)	360, 420
Bsp1286I	GDGCHC	2 cut(s)	214, 223
Bsp143I	GATC	2 cut(s)	382, 502
BspACI	CCGC	1 cut(s)	357
BspANI	GGCC	2 cut(s)	360, 420
BspCNI	CTCAG	4 cut(s)	115, 139, 207, 274
BspHI	TCATGA	1 cut(s)	51
BspLI	GGNNCC	1 cut(s)	487
BspMAI	CTGCAG	1 cut(s)	426
BspMI	ACCTGC	1 cut(s)	415
BspT107I	GGYRCC	1 cut(s)	485
BssECI	CCNNGG	2 cut(s)	87, 243
BssMI	GATC	2 cut(s)	382, 502
BssNI	GRCGYC	1 cut(s)	152
BssT1I	CCWWGG	1 cut(s)	87
Bst2UI	CCWGG	1 cut(s)	245
Bst4CI	ACNGT	1 cut(s)	187
BstACI	GRCGYC	1 cut(s)	152
BstC8I	GCNNGC	1 cut(s)	422
BstDEI	CTNAG	5 cut(s)	123, 131, 147, 215, 282
BstKTI	GATC	2 cut(s)	385, 505
BstMAI	GTCTC	1 cut(s)	282
BstMBI	GATC	2 cut(s)	382, 502
BstMWI	GCNNNNNNNGC	2 cut(s)	218, 305
BstNI	CCWGG	1 cut(s)	245
BstPAI	GACNNNNGTC	1 cut(s)	162
BstSCI	CCNGG	1 cut(s)	243
BstSFI	CTRYAG	1 cut(s)	422
BstV1I	GCAGC	7 cut(s)	12, 283, 286, 344, 366, 401, 453
BsuRI	GGCC	2 cut(s)	360, 420
BveI	ACCTGC	1 cut(s)	415
Cac8I	GCNNGC	1 cut(s)	422
CciI	TCATGA	1 cut(s)	51
CseI	GACGC	1 cut(s)	141
Csp6I	GTAC	1 cut(s)	259
CviAII	CATG	2 cut(s)	52, 403
CviQI	GTAC	1 cut(s)	259
DdeI	CTNAG	5 cut(s)	123, 131, 147, 215, 282
DpnI	GATC	2 cut(s)	384, 504
DpnII	GATC	2 cut(s)	382, 502
EaeI	YGGCCR	1 cut(s)	358
Eco130I	CCWWGG	1 cut(s)	87
Eco147I	AGGCCT	1 cut(s)	420
Eco24I	GRGCYC	1 cut(s)	214
Eco32I	GATATC	1 cut(s)	376
EcoRII	CCWGG	1 cut(s)	243
EcoRV	GATATC	1 cut(s)	376
EcoT14I	CCWWGG	1 cut(s)	87
EcoT38I	GRGCYC	1 cut(s)	214
ErhI	CCWWGG	1 cut(s)	87
FaeI	CATG	2 cut(s)	55, 406
FaiI	YATR	8 cut(s)	53, 240, 254, 267, 273, 368, 404, 513
FatI	CATG	2 cut(s)	51, 402
FbaI	TGATCA	1 cut(s)	502
Fnu4HI	GCNGC	8 cut(s)	26, 297, 300, 333, 355, 358, 390, 467
FriOI	GRGCYC	1 cut(s)	214
Fsp4HI	GCNGC	8 cut(s)	26, 297, 300, 333, 355, 358, 390, 467
FspBI	CTAG	1 cut(s)	224
GluI	GCNGC	8 cut(s)	26, 297, 300, 333, 355, 358, 390, 467
GsuI	CTGGAG	1 cut(s)	432
HaeIII	GGCC	2 cut(s)	360, 420
HgaI	GACGC	1 cut(s)	141
Hin1I	GRCGYC	1 cut(s)	152
Hin1II	CATG	2 cut(s)	55, 406
HincII	GTYRAC	1 cut(s)	413
HindII	GTYRAC	1 cut(s)	413
HinfI	GANTC	1 cut(s)	175
HphI	GGTGA	1 cut(s)	491
Hpy166II	GTNNAC	1 cut(s)	413
Hpy188I	TCNGA	3 cut(s)	157, 216, 380
Hpy188III	TCNNGA	3 cut(s)	52, 449, 506
Hpy8I	GTNNAC	1 cut(s)	413
HpyCH4III	ACNGT	1 cut(s)	187
HpyCH4IV	ACGT	1 cut(s)	39
HpyCH4V	TGCA	6 cut(s)	35, 109, 119, 265, 302, 424
HpyF10VI	GCNNNNNNNGC	2 cut(s)	218, 305
HpyF3I	CTNAG	5 cut(s)	123, 131, 147, 215, 282
HpySE526I	ACGT	1 cut(s)	39
Hsp92I	GRCGYC	1 cut(s)	152
Hsp92II	CATG	2 cut(s)	55, 406
Ksp22I	TGATCA	1 cut(s)	502
Kzo9I	GATC	2 cut(s)	382, 502
LmnI	GCTCC	1 cut(s)	433
LpnPI	CCDG	5 cut(s)	230, 257, 410, 434, 462
Lsp1109I	GCAGC	7 cut(s)	12, 283, 286, 344, 366, 401, 453
LweI	GCATC	1 cut(s)	57
MaeI	CTAG	1 cut(s)	224
MaeII	ACGT	1 cut(s)	39
MaeIII	GTNAC	3 cut(s)	139, 164, 479
MalI	GATC	2 cut(s)	384, 504
MboI	GATC	2 cut(s)	382, 502
MboII	GAAGA	1 cut(s)	56
MfeI	CAATTG	1 cut(s)	30
MhlI	GDGCHC	2 cut(s)	214, 223
MluCI	AATT	4 cut(s)	30, 60, 81, 514
MnlI	CCTC	1 cut(s)	142
MspA1I	CMGCKG	1 cut(s)	357
MspR9I	CCNGG	1 cut(s)	245
MunI	CAATTG	1 cut(s)	30
Mva1269I	GAATGC	1 cut(s)	111
MvaI	CCWGG	1 cut(s)	245
MwoI	GCNNNNNNNGC	2 cut(s)	218, 305
NdeII	GATC	2 cut(s)	382, 502
NlaIII	CATG	2 cut(s)	55, 406
NlaIV	GGNNCC	1 cut(s)	487
NmuCI	GTSAC	3 cut(s)	139, 164, 479
PagI	TCATGA	1 cut(s)	51
PceI	AGGCCT	1 cut(s)	420
PcsI	WCGNNNNNNNCGW	1 cut(s)	149
PctI	GAATGC	1 cut(s)	111
PfeI	GAWTC	1 cut(s)	175
PkrI	GCNGC	8 cut(s)	27, 298, 301, 334, 356, 359, 391, 468
PshAI	GACNNNNGTC	1 cut(s)	162
Psp6I	CCWGG	1 cut(s)	243
PspGI	CCWGG	1 cut(s)	243
PspN4I	GGNNCC	1 cut(s)	487
PstI	CTGCAG	1 cut(s)	426
RsaI	GTAC	1 cut(s)	260
RsaNI	GTAC	1 cut(s)	259
SatI	GCNGC	8 cut(s)	26, 297, 300, 333, 355, 358, 390, 467
Sau3AI	GATC	2 cut(s)	382, 502
SbfI	CCTGCAGG	1 cut(s)	426
ScrFI	CCNGG	1 cut(s)	245
SdaI	CCTGCAGG	1 cut(s)	426
SduI	GDGCHC	2 cut(s)	214, 223
SetI	ASST	7 cut(s)	42, 229, 260, 283, 298, 429, 481
SfaNI	GCATC	1 cut(s)	57
SfcI	CTRYAG	1 cut(s)	422
Sse8387I	CCTGCAGG	1 cut(s)	426
Sse9I	AATT	4 cut(s)	30, 60, 81, 514
SseBI	AGGCCT	1 cut(s)	420
SsiI	CCGC	1 cut(s)	357
SspMI	CTAG	1 cut(s)	224
StuI	AGGCCT	1 cut(s)	420
StyD4I	CCNGG	1 cut(s)	243
StyI	CCWWGG	1 cut(s)	87
TaaI	ACNGT	1 cut(s)	187
TaiI	ACGT	1 cut(s)	42
TaqI	TCGA	1 cut(s)	385
TasI	AATT	4 cut(s)	30, 60, 81, 514
TauI	GCSGC	1 cut(s)	360
TfiI	GAWTC	1 cut(s)	175
TseFI	GTSAC	3 cut(s)	139, 164, 479
TseI	GCWGC	7 cut(s)	25, 296, 299, 332, 354, 389, 466
Tsp45I	GTSAC	3 cut(s)	139, 164, 479
TspDTI	ATGAA	3 cut(s)	24, 68, 383
XapI	RAATTY	2 cut(s)	60, 81
XspI	CTAG	1 cut(s)	224

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.