Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0015296

Physical Location & Seq

Genomic Coordinates Forward (+)

45393203 .. 45393673

Gene Structure 471 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000025374

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

ATGGTTGATCATGAGGAAGAACAAGATCGGTTGCTGCCAATTGCAAACGTGGGGAGGATCATGAAGCAAATTCTTCCCCAAAGAGCAAAAGTCTCCAAGGAAGCTAAGCAAAGGATGCAAGAGTGTGCAACTGAGTTCCTAAGTTTTGTGACAGGCGAGGCTTCTGACAAGTGTCACAAAGAGAATCGAAAGACAGTGAATGGGGACGACATCTGTTGGGCTCTGAGTGCTCTAGGATTTGATAACTACGCTGAGGCTACAACAAGGTACTTGCATAAGTTTAGGGAAGCTGAGAGAGAGAGATTAGCAGCTAACCAAAGCAATGTTAATATTAAGATTAATACTAGCTCATCCAGCCCATTAGAGATCAGAGAAGAAGATCAGCCAATCTATTTAAGTGGAACTCAGCCTCCAAATCTGGAGTTCAGGATTCTTGAGAAGGGTGACAACTCCTTTGCCAAGCAATCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04612 ko05152 ko05166 map04612 map05152 map05166

Pfam Domains

Protein Families

CBFD_NFYB_HMF

Protein Analysis

157

Amino Acids

17.8

Weight (kDa)

5.7

Isoelectric Point (pI)

53.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Histone	PF00125	6 - 75	4.7e-06	Core histone H2A/H2B/H3/H4 domain
CBFD_NFYB_HMF	PF00808	11 - 75	1.1e-24	Histone-like transcription factor (CBF/NF-Y) and archaeal histone

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0015296)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09030
fragaria_vesca	FvH4_6g06220
malus_domestica	MD04G1203300.v1.1 MD12G1217100.v1.1
prunus_persica	Prupe.6G323400_v2.0.a1
pyrus_communis	pycom04g17970
rosa_chinensis	RchiOBHm_Chr3g0455241
rosa_laevigata	RLG00000025374
rosa_multiflora	Rmu_sc0002169.1_g000034
rosa_roxburghii	Rroxscaffold_6G00424430
rosa_rugosa	Rorug03G0005500
rosa_samantha	Rh3AG065500 Rh3BG067600 Rh3CG066100 Rh3DG067700
rosa_wichuraiana	Rw3G005160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	65
AcsI	RAATTY	1 cut(s)	69
AfaI	GTAC	1 cut(s)	269
AloI	GAACNNNNNNTCC	2 cut(s)	394, 426
AluBI	AGCT	4 cut(s)	104, 290, 311, 348
AluI	AGCT	4 cut(s)	104, 290, 311, 348
Alw21I	GWGCWC	1 cut(s)	232
Alw26I	GTCTC	1 cut(s)	97
AlwI	GGATC	1 cut(s)	65
ApeKI	GCWGC	2 cut(s)	34, 308
ApoI	RAATTY	1 cut(s)	69
ArsI	GACNNNNNNTTYG	2 cut(s)	437, 469
AseI	ATTAAT	1 cut(s)	339
AsuHPI	GGTGA	1 cut(s)	455
BanII	GRGCYC	1 cut(s)	223
Bbv12I	GWGCWC	1 cut(s)	232
BbvCI	CCTCAGC	1 cut(s)	252
BbvI	GCAGC	2 cut(s)	21, 320
BclI	TGATCA	1 cut(s)	7
BcoDI	GTCTC	1 cut(s)	97
BfaI	CTAG	2 cut(s)	233, 345
BisI	GCNGC	2 cut(s)	35, 309
BlpI	GCTNAGC	1 cut(s)	105
BlsI	GCNGC	2 cut(s)	36, 310
BmsI	GCATC	1 cut(s)	105
BoxI	GACNNNNGTC	1 cut(s)	171
BpmI	CTGGAG	1 cut(s)	440
Bpu10I	CCTNAGC	1 cut(s)	252
Bpu1102I	GCTNAGC	1 cut(s)	105
BpuEI	CTTGAG	1 cut(s)	455
BsaJI	CCNNGG	1 cut(s)	96
BsaXI	ACNNNNNCTCC	2 cut(s)	394, 424
Bse3DI	GCAATG	1 cut(s)	328
BseDI	CCNNGG	1 cut(s)	96
BseGI	GGATG	2 cut(s)	120, 350
BseMI	GCAATG	1 cut(s)	328
BseMII	CTCAG	5 cut(s)	123, 215, 243, 282, 419
BseXI	GCAGC	2 cut(s)	21, 320
BsiHKAI	GWGCWC	1 cut(s)	232
BslFI	GGGAC	1 cut(s)	218
BsmAI	GTCTC	1 cut(s)	97
BsmFI	GGGAC	1 cut(s)	218
Bsp1286I	GDGCHC	2 cut(s)	223, 232
Bsp143I	GATC	5 cut(s)	7, 25, 57, 366, 379
Bsp1720I	GCTNAGC	1 cut(s)	105
BspCNI	CTCAG	5 cut(s)	124, 216, 244, 283, 418
BspHI	TCATGA	2 cut(s)	10, 60
BspPI	GGATC	1 cut(s)	65
BsrDI	GCAATG	1 cut(s)	328
BssECI	CCNNGG	1 cut(s)	96
BssMI	GATC	5 cut(s)	7, 25, 57, 366, 379
BssT1I	CCWWGG	1 cut(s)	96
Bst4CI	ACNGT	1 cut(s)	196
BstAPI	GCANNNNNTGC	1 cut(s)	115
BstDEI	CTNAG	7 cut(s)	105, 132, 140, 224, 252, 291, 405
BstF5I	GGATG	2 cut(s)	120, 350
BstKTI	GATC	5 cut(s)	10, 28, 60, 369, 382
BstMAI	GTCTC	1 cut(s)	97
BstMBI	GATC	5 cut(s)	7, 25, 57, 366, 379
BstMWI	GCNNNNNNNGC	3 cut(s)	115, 227, 354
BstPAI	GACNNNNGTC	1 cut(s)	171
BstV1I	GCAGC	2 cut(s)	21, 320
BtsCI	GGATG	2 cut(s)	120, 350
BtsIMutI	CAGTG	1 cut(s)	201
CciI	TCATGA	2 cut(s)	10, 60
Csp6I	GTAC	1 cut(s)	268
CviAII	CATG	2 cut(s)	11, 61
CviQI	GTAC	1 cut(s)	268
DdeI	CTNAG	7 cut(s)	105, 132, 140, 224, 252, 291, 405
DpnI	GATC	5 cut(s)	9, 27, 59, 368, 381
DpnII	GATC	5 cut(s)	7, 25, 57, 366, 379
Eco130I	CCWWGG	1 cut(s)	96
Eco24I	GRGCYC	1 cut(s)	223
EcoT14I	CCWWGG	1 cut(s)	96
EcoT38I	GRGCYC	1 cut(s)	223
ErhI	CCWWGG	1 cut(s)	96
FaeI	CATG	2 cut(s)	14, 64
FaiI	YATR	3 cut(s)	12, 62, 276
FaqI	GGGAC	1 cut(s)	218
FatI	CATG	2 cut(s)	10, 60
FbaI	TGATCA	1 cut(s)	7
Fnu4HI	GCNGC	2 cut(s)	35, 309
FokI	GGATG	2 cut(s)	127, 337
FriOI	GRGCYC	1 cut(s)	223
Fsp4HI	GCNGC	2 cut(s)	35, 309
FspBI	CTAG	2 cut(s)	233, 345
GluI	GCNGC	2 cut(s)	35, 309
GsuI	CTGGAG	1 cut(s)	440
Hin1II	CATG	2 cut(s)	14, 64
HinfI	GANTC	2 cut(s)	184, 430
HphI	GGTGA	1 cut(s)	455
Hpy188I	TCNGA	3 cut(s)	166, 225, 371
Hpy188III	TCNNGA	6 cut(s)	11, 61, 419, 427, 434, 468
HpyAV	CCTTC	1 cut(s)	433
HpyCH4III	ACNGT	1 cut(s)	196
HpyCH4IV	ACGT	1 cut(s)	48
HpyCH4V	TGCA	4 cut(s)	44, 118, 128, 274
HpyF10VI	GCNNNNNNNGC	3 cut(s)	115, 227, 354
HpyF3I	CTNAG	7 cut(s)	105, 132, 140, 224, 252, 291, 405
HpySE526I	ACGT	1 cut(s)	48
Hsp92II	CATG	2 cut(s)	14, 64
Ksp22I	TGATCA	1 cut(s)	7
Kzo9I	GATC	5 cut(s)	7, 25, 57, 366, 379
LpnPI	CCDG	4 cut(s)	138, 367, 404, 412
Lsp1109I	GCAGC	2 cut(s)	21, 320
LweI	GCATC	1 cut(s)	105
MaeI	CTAG	2 cut(s)	233, 345
MaeII	ACGT	1 cut(s)	48
MaeIII	GTNAC	3 cut(s)	148, 173, 443
MalI	GATC	5 cut(s)	9, 27, 59, 368, 381
MboI	GATC	5 cut(s)	7, 25, 57, 366, 379
MboII	GAAGA	4 cut(s)	29, 65, 386, 389
MfeI	CAATTG	1 cut(s)	39
MhlI	GDGCHC	2 cut(s)	223, 232
MluCI	AATT	2 cut(s)	39, 69
MnlI	CCTC	5 cut(s)	7, 48, 151, 247, 420
MseI	TTAA	4 cut(s)	327, 333, 339, 395
MunI	CAATTG	1 cut(s)	39
MwoI	GCNNNNNNNGC	3 cut(s)	115, 227, 354
NdeII	GATC	5 cut(s)	7, 25, 57, 366, 379
NlaIII	CATG	2 cut(s)	14, 64
NmuCI	GTSAC	3 cut(s)	148, 173, 443
PagI	TCATGA	2 cut(s)	10, 60
PfeI	GAWTC	2 cut(s)	184, 430
PkrI	GCNGC	2 cut(s)	36, 310
PshAI	GACNNNNGTC	1 cut(s)	171
PshBI	ATTAAT	1 cut(s)	339
RsaI	GTAC	1 cut(s)	269
RsaNI	GTAC	1 cut(s)	268
SaqAI	TTAA	4 cut(s)	327, 333, 339, 395
SatI	GCNGC	2 cut(s)	35, 309
Sau3AI	GATC	5 cut(s)	7, 25, 57, 366, 379
SduI	GDGCHC	2 cut(s)	223, 232
SetI	ASST	6 cut(s)	51, 106, 269, 292, 313, 350
SfaNI	GCATC	1 cut(s)	105
SmlI	CTYRAG	1 cut(s)	434
SmoI	CTYRAG	1 cut(s)	434
Sse9I	AATT	2 cut(s)	39, 69
SspI	AATATT	1 cut(s)	331
SspMI	CTAG	2 cut(s)	233, 345
StyI	CCWWGG	1 cut(s)	96
TaaI	ACNGT	1 cut(s)	196
TaiI	ACGT	1 cut(s)	51
TaqI	TCGA	1 cut(s)	187
TasI	AATT	2 cut(s)	39, 69
TfiI	GAWTC	2 cut(s)	184, 430
Tru1I	TTAA	4 cut(s)	327, 333, 339, 395
Tru9I	TTAA	4 cut(s)	327, 333, 339, 395
TscAI	CASTG	1 cut(s)	201
TseFI	GTSAC	3 cut(s)	148, 173, 443
TseI	GCWGC	2 cut(s)	34, 308
Tsp45I	GTSAC	3 cut(s)	148, 173, 443
TspDTI	ATGAA	1 cut(s)	77
TspRI	CASTG	1 cut(s)	201
VspI	ATTAAT	1 cut(s)	339
XapI	RAATTY	1 cut(s)	69
XspI	CTAG	2 cut(s)	233, 345

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.