pycom04g17970

Nuclear transcription factor Y subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
OG0015296
Physical Location & Seq
Forward (+)
20143404 .. 20144053
650 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom04g17970.2

Sequence Viewer

Length: 537 bp
ATGTATCATCAAATACTAAAACATTTACAGAAGCAACGTGTCTGTGTCAGAAGAGATCAATTAACTCCTCCAAATCCTAATTGTAGGGATCGATCAATCAACATGGTTGATCAGGAACAAGATGGGATGCTCCCAATTGCAAACGTGGGTCGAATCATGAAGCAAATTCTTCCCCCAAGAGCCAAAATTTCCAAGGAGGCGAAACAAACAATGCAAGAATGTGCAACTGAGTTCCTAAGTTTTGTGACTGGCGAGGCTTCTGACAAGTGTCACAAGGAGAATCGCAAGACCGTCAATGGAGACGACATCTGTTGGGCTCTGAGTGCTCTAGGGTTTGATAACTATGCCCAGGCTGCTATGAGGTACTTGCATAAATATAGGGAAGCTGAAAGAGACAAAGCTGCTGCTAACAACAACCAAAACACAGCAAATATTGCCAGTCATGGAGGCCTGCAAGTAAGGGAGCAAACTCAGACTTCAAATCTGGAGTTTCGGGTGCTTGAGAAAGGTGACAACTCCCTTATTACCAAGCCATGA

Protein Analysis

179

Amino Acids

20.26

Weight (kDa)

8.99

Isoelectric Point (pI)

38.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015296)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G09030
fragaria_vesca FvH4_6g06220
malus_domestica MD04G1203300.v1.1 MD12G1217100.v1.1
prunus_persica Prupe.6G323400_v2.0.a1
pyrus_communis pycom04g17970
rosa_chinensis RchiOBHm_Chr3g0455241
rosa_laevigata RLG00000025374
rosa_multiflora Rmu_sc0002169.1_g000034
rosa_roxburghii Rroxscaffold_6G00424430
rosa_rugosa Rorug03G0005500
rosa_samantha Rh3AG065500 Rh3BG067600 Rh3CG066100 Rh3DG067700
rosa_wichuraiana Rw3G005160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 96
AcsI RAATTY 2 cut(s) 165, 186
AfaI GTAC 1 cut(s) 365
AflIII ACRYGT 1 cut(s) 37
AgsI TTSAA 1 cut(s) 480
AjnI CCWGG 1 cut(s) 348
AluBI AGCT 2 cut(s) 386, 401
AluI AGCT 2 cut(s) 386, 401
Alw21I GWGCWC 1 cut(s) 328
Alw26I GTCTC 2 cut(s) 294, 387
AlwI GGATC 1 cut(s) 96
AoxI GGCC 1 cut(s) 448
ApeKI GCWGC 3 cut(s) 353, 401, 404
ApoI RAATTY 2 cut(s) 165, 186
AsuHPI GGTGA 1 cut(s) 521
BanII GRGCYC 1 cut(s) 319
Bbv12I GWGCWC 1 cut(s) 328
BbvI GCAGC 3 cut(s) 340, 388, 391
BccI CCATC 1 cut(s) 116
BciT130I CCWGG 1 cut(s) 350
BclI TGATCA 1 cut(s) 109
BcoDI GTCTC 2 cut(s) 294, 387
BfaI CTAG 1 cut(s) 329
BisI GCNGC 3 cut(s) 354, 402, 405
BlsI GCNGC 3 cut(s) 355, 403, 406
Bme1390I CCNGG 1 cut(s) 350
BmrFI CCNGG 1 cut(s) 350
BmsI GCATC 1 cut(s) 117
BoxI GACNNNNGTC 1 cut(s) 267
BpmI CTGGAG 1 cut(s) 506
BpuEI CTTGAG 1 cut(s) 521
Bsa29I ATCGAT 1 cut(s) 91
BsaJI CCNNGG 2 cut(s) 192, 348
Bse1I ACTGG 2 cut(s) 253, 438
BseBI CCWGG 1 cut(s) 350
BseCI ATCGAT 1 cut(s) 91
BseDI CCNNGG 2 cut(s) 192, 348
BseGI GGATG 1 cut(s) 132
BseMII CTCAG 3 cut(s) 219, 311, 485
BseNI ACTGG 2 cut(s) 253, 438
BseRI GAGGAG 1 cut(s) 57
BseXI GCAGC 3 cut(s) 340, 388, 391
BshFI GGCC 1 cut(s) 450
BshVI ATCGAT 1 cut(s) 91
BsiHKAI GWGCWC 1 cut(s) 328
BsmAI GTCTC 2 cut(s) 294, 387
BsmBI CGTCTC 1 cut(s) 294
BsnI GGCC 1 cut(s) 450
Bsp1286I GDGCHC 2 cut(s) 319, 328
Bsp143I GATC 4 cut(s) 55, 88, 92, 109
BspANI GGCC 1 cut(s) 450
BspCNI CTCAG 3 cut(s) 220, 312, 484
BspDI ATCGAT 1 cut(s) 91
BspHI TCATGA 1 cut(s) 156
BspPI GGATC 1 cut(s) 96
BsrI ACTGG 2 cut(s) 253, 438
BssECI CCNNGG 2 cut(s) 192, 348
BssMI GATC 4 cut(s) 55, 88, 92, 109
BssT1I CCWWGG 1 cut(s) 192
Bst2UI CCWGG 1 cut(s) 350
Bst4CI ACNGT 1 cut(s) 292
Bst6I CTCTTC 1 cut(s) 46
BstAPI GCANNNNNTGC 1 cut(s) 434
BstC8I GCNNGC 1 cut(s) 452
BstDEI CTNAG 4 cut(s) 228, 236, 320, 471
BstF5I GGATG 1 cut(s) 132
BstKTI GATC 4 cut(s) 58, 91, 95, 112
BstMAI GTCTC 2 cut(s) 294, 387
BstMBI GATC 4 cut(s) 55, 88, 92, 109
BstMWI GCNNNNNNNGC 3 cut(s) 323, 353, 434
BstNI CCWGG 1 cut(s) 350
BstPAI GACNNNNGTC 1 cut(s) 267
BstSCI CCNGG 1 cut(s) 348
BstV1I GCAGC 3 cut(s) 340, 388, 391
Bsu15I ATCGAT 1 cut(s) 91
BsuRI GGCC 1 cut(s) 450
BsuTUI ATCGAT 1 cut(s) 91
BtsCI GGATG 1 cut(s) 132
Cac8I GCNNGC 1 cut(s) 452
CciI TCATGA 1 cut(s) 156
ClaI ATCGAT 1 cut(s) 91
Csp6I GTAC 1 cut(s) 364
CviAII CATG 4 cut(s) 103, 157, 443, 534
CviJI RGCY 8 cut(s) 182, 257, 317, 353, 386, 401, 450, 532
CviKI_1 RGCY 8 cut(s) 182, 257, 317, 353, 386, 401, 450, 532
CviQI GTAC 1 cut(s) 364
DdeI CTNAG 4 cut(s) 228, 236, 320, 471
DpnI GATC 4 cut(s) 57, 90, 94, 111
DpnII GATC 4 cut(s) 55, 88, 92, 109
Eam1104I CTCTTC 1 cut(s) 46
EarI CTCTTC 1 cut(s) 46
Eco130I CCWWGG 1 cut(s) 192
Eco147I AGGCCT 1 cut(s) 450
Eco24I GRGCYC 1 cut(s) 319
EcoRII CCWGG 1 cut(s) 348
EcoT14I CCWWGG 1 cut(s) 192
EcoT38I GRGCYC 1 cut(s) 319
ErhI CCWWGG 1 cut(s) 192
Esp3I CGTCTC 1 cut(s) 294
FaeI CATG 4 cut(s) 106, 160, 446, 537
FaiI YATR 8 cut(s) 104, 158, 345, 359, 372, 378, 444, 535
FatI CATG 4 cut(s) 102, 156, 442, 533
FbaI TGATCA 1 cut(s) 109
Fnu4HI GCNGC 3 cut(s) 354, 402, 405
FokI GGATG 1 cut(s) 139
FriOI GRGCYC 1 cut(s) 319
Fsp4HI GCNGC 3 cut(s) 354, 402, 405
FspBI CTAG 1 cut(s) 329
GluI GCNGC 3 cut(s) 354, 402, 405
GsuI CTGGAG 1 cut(s) 506
HaeIII GGCC 1 cut(s) 450
Hin1II CATG 4 cut(s) 106, 160, 446, 537
HinfI GANTC 2 cut(s) 153, 280
HphI GGTGA 1 cut(s) 521
Hpy188I TCNGA 4 cut(s) 50, 262, 321, 474
Hpy188III TCNNGA 3 cut(s) 113, 157, 485
HpyCH4III ACNGT 1 cut(s) 292
HpyCH4IV ACGT 2 cut(s) 37, 144
HpyCH4V TGCA 5 cut(s) 140, 214, 224, 370, 454
HpyF10VI GCNNNNNNNGC 3 cut(s) 323, 353, 434
HpyF3I CTNAG 4 cut(s) 228, 236, 320, 471
HpySE526I ACGT 2 cut(s) 37, 144
Hsp92II CATG 4 cut(s) 106, 160, 446, 537
Ksp22I TGATCA 1 cut(s) 109
Kzo9I GATC 4 cut(s) 55, 88, 92, 109
LmnI GCTCC 2 cut(s) 135, 463
LpnPI CCDG 7 cut(s) 98, 234, 335, 362, 451, 464, 470
Lsp1109I GCAGC 3 cut(s) 340, 388, 391
LweI GCATC 1 cut(s) 117
MaeI CTAG 1 cut(s) 329
MaeII ACGT 2 cut(s) 37, 144
MaeIII GTNAC 3 cut(s) 244, 269, 509
MalI GATC 4 cut(s) 57, 90, 94, 111
MboI GATC 4 cut(s) 55, 88, 92, 109
MboII GAAGA 2 cut(s) 63, 161
MfeI CAATTG 1 cut(s) 135
MhlI GDGCHC 2 cut(s) 319, 328
MluCI AATT 5 cut(s) 59, 79, 135, 165, 186
MnlI CCTC 5 cut(s) 78, 190, 247, 354, 440
MseI TTAA 1 cut(s) 62
MspR9I CCNGG 1 cut(s) 350
MunI CAATTG 1 cut(s) 135
MvaI CCWGG 1 cut(s) 350
MwoI GCNNNNNNNGC 3 cut(s) 323, 353, 434
NdeII GATC 4 cut(s) 55, 88, 92, 109
NlaIII CATG 4 cut(s) 106, 160, 446, 537
NmuCI GTSAC 3 cut(s) 244, 269, 509
PagI TCATGA 1 cut(s) 156
PceI AGGCCT 1 cut(s) 450
PfeI GAWTC 2 cut(s) 153, 280
PkrI GCNGC 3 cut(s) 355, 403, 406
PshAI GACNNNNGTC 1 cut(s) 267
Psp6I CCWGG 1 cut(s) 348
PspGI CCWGG 1 cut(s) 348
RsaI GTAC 1 cut(s) 365
RsaNI GTAC 1 cut(s) 364
SaqAI TTAA 1 cut(s) 62
SatI GCNGC 3 cut(s) 354, 402, 405
Sau3AI GATC 4 cut(s) 55, 88, 92, 109
ScrFI CCNGG 1 cut(s) 350
SduI GDGCHC 2 cut(s) 319, 328
SetI ASST 6 cut(s) 40, 147, 365, 388, 403, 511
SfaNI GCATC 1 cut(s) 117
SmlI CTYRAG 1 cut(s) 500
SmoI CTYRAG 1 cut(s) 500
Sse9I AATT 5 cut(s) 59, 79, 135, 165, 186
SseBI AGGCCT 1 cut(s) 450
SspI AATATT 1 cut(s) 433
SspMI CTAG 1 cut(s) 329
StuI AGGCCT 1 cut(s) 450
StyD4I CCNGG 1 cut(s) 348
StyI CCWWGG 1 cut(s) 192
TaaI ACNGT 1 cut(s) 292
TaiI ACGT 2 cut(s) 40, 147
TaqI TCGA 2 cut(s) 91, 151
TasI AATT 5 cut(s) 59, 79, 135, 165, 186
TfiI GAWTC 2 cut(s) 153, 280
Tru1I TTAA 1 cut(s) 62
Tru9I TTAA 1 cut(s) 62
TseFI GTSAC 3 cut(s) 244, 269, 509
TseI GCWGC 3 cut(s) 353, 401, 404
Tsp45I GTSAC 3 cut(s) 244, 269, 509
TspDTI ATGAA 1 cut(s) 173
XapI RAATTY 2 cut(s) 165, 186
XspI CTAG 1 cut(s) 329
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.