AT1G09130

ATP-dependent Clp protease proteolytic

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0010248
Physical Location & Seq
Reverse (-)
2939568 .. 2942345
2778 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G09130.3

Sequence Viewer

Length: 993 bp
ATGGCGTCTTGTTTACAAGCATCCATGAATTCTCTGCTTCCACGCTCTTCTTCTTTTTCTCCTCATCCTCCTCTATCTTCGAATTCATCCGGGAGAAGAAACTTGAAGACTTTTCGTTACGCCTTTCGCGCCAAAGCCTCTGCCAAAATCCCTATGCCTCCGATAAATCCAAAGGATCCTTTCCTCTCCACGCTCGCTTCTATTGCCGCGAATTCTCCGGAAAAGCTTCTCAATCGGCCGGTTAACGCTGATGTGCCGCCATATCTTGACATCTTTGACTCCCCTCAGCTCATGTCTTCTCCTGCACAGGTTGAAAGATCAGTGGCTTATAACGAGCACCGACCGAGAACTCCTCCACCAGACTTGCCATCTATGCTTCTTGACGGGAGAATTGTTTACATTGGAATGCCTCTTGTGCCGGCAGTGACTGAGCTAGTTGTCGCTGAGCTAATGTATCTTCAGTGGCTGGATCCCAAGGAACCCATTTACATTTACATCAACTCCACAGGGACCACTCGTGATGATGGAGAGACGGTTGGAATGGAATCAGAAGGGTTTGCGATCTATGACTCTTTGATGCAACTTAAAAACGAGGTACATACAGTATGTGTGGGAGCAGCCATAGGTCAGGCCTGTCTATTACTTTCTGCGGGAACCAAGGGTAAACGGTTTATGATGCCACATGCCAAAGCGATGATTCAGCAACCACGTGTACCTTCTTCTGGGTTGATGCCTGCCAGTGATGTCCTGATTCGGGCCAAAGAGGTCATTACAAATAGGGATATACTTGTGGAACTACTATCAAAGCATACTGGGAATTCCGTGGAGACTGTAGCTAACGTAATGAGAAGGCCATATTACATGGATGCACCAAAAGCTAAAGAATTTGGAGTCATTGACAGGATTCTTTGGCGCGGTCAAGAAAAGATTATTGCGGACGTGGTTCCTTCAGAGGAATTCGACAAGAATGCAGGGATTAAAAGCGTAGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CLP_protease

Protein Analysis

330

Amino Acids

36.31

Weight (kDa)

8.64

Isoelectric Point (pI)

57.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CLP_protease PF00574 122 - 303 3e-43 Clp protease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 330
AccII CGCG 3 cut(s) 129, 209, 915
AccIII TCCGGA 1 cut(s) 217
AciI CCGC 5 cut(s) 207, 257, 650, 915, 935
AclWI GGATC 4 cut(s) 170, 183, 464, 477
AcoI YGGCCR 1 cut(s) 236
AcsI RAATTY 6 cut(s) 28, 82, 211, 817, 884, 956
AcuI CTGAAG 2 cut(s) 443, 933
AcvI CACGTG 1 cut(s) 710
AcyI GRCGYC 1 cut(s) 5
AfaI GTAC 2 cut(s) 597, 714
AfiI CCNNNNNNNGG 2 cut(s) 722, 754
AflIII ACRYGT 1 cut(s) 709
AgsI TTSAA 2 cut(s) 106, 314
AjiI CACGTC 1 cut(s) 940
AluBI AGCT 6 cut(s) 226, 289, 433, 448, 836, 878
AluI AGCT 6 cut(s) 226, 289, 433, 448, 836, 878
Alw21I GWGCWC 1 cut(s) 339
Alw26I GTCTC 2 cut(s) 524, 821
AlwI GGATC 4 cut(s) 170, 183, 464, 477
AlwNI CAGNNNCTG 2 cut(s) 428, 466
Aor13HI TCCGGA 1 cut(s) 217
AoxI GGCC 4 cut(s) 236, 630, 756, 851
ApeKI GCWGC 1 cut(s) 617
ApoI RAATTY 6 cut(s) 28, 82, 211, 817, 884, 956
Asp700I GAANNNNTTC 1 cut(s) 225
AspLEI GCGC 2 cut(s) 131, 915
AspS9I GGNCC 2 cut(s) 510, 756
AsuC2I CCSGG 1 cut(s) 91
AsuII TTCGAA 1 cut(s) 80
AvaII GGWCC 1 cut(s) 510
BamHI GGATCC 2 cut(s) 175, 469
BauI CACGAG 1 cut(s) 516
BbrPI CACGTG 1 cut(s) 710
BbsI GAAGAC 2 cut(s) 113, 288
Bbv12I GWGCWC 1 cut(s) 339
BbvCI CCTCAGC 1 cut(s) 285
BbvI GCAGC 1 cut(s) 629
BccI CCATC 2 cut(s) 376, 518
BcgI CGANNNNNNTGC 2 cut(s) 950, 984
BcnI CCSGG 1 cut(s) 91
BcoDI GTCTC 2 cut(s) 524, 821
BfaI CTAG 1 cut(s) 434
BfmI CTRYAG 1 cut(s) 831
BisI GCNGC 3 cut(s) 207, 257, 618
BlpI GCTNAGC 1 cut(s) 444
BlsI GCNGC 3 cut(s) 208, 258, 619
Bme1390I CCNGG 1 cut(s) 91
Bme18I GGWCC 1 cut(s) 510
BmgBI CACGTC 1 cut(s) 940
BmgT120I GGNCC 2 cut(s) 510, 756
BmiI GGNNCC 6 cut(s) 177, 471, 480, 511, 655, 945
BmrFI CCNGG 1 cut(s) 91
BmrI ACTGGG 1 cut(s) 822
BmsI GCATC 5 cut(s) 29, 567, 666, 720, 856
BmuI ACTGGG 1 cut(s) 822
BpiI GAAGAC 2 cut(s) 113, 288
BplI GAGNNNNNCTC 2 cut(s) 337, 369
Bpu10I CCTNAGC 1 cut(s) 285
Bpu1102I GCTNAGC 1 cut(s) 444
Bpu14I TTCGAA 1 cut(s) 80
BpuMI CCSGG 1 cut(s) 91
BsaAI YACGTR 1 cut(s) 710
BsaHI GRCGYC 1 cut(s) 5
BsaJI CCNNGG 3 cut(s) 474, 657, 822
BsaWI WCCGGW 1 cut(s) 217
BsaXI ACNNNNNCTCC 4 cut(s) 485, 515, 519, 549
Bsc4I CCNNNNNNNGG 2 cut(s) 722, 754
Bse118I RCCGGY 2 cut(s) 238, 418
Bse1I ACTGG 2 cut(s) 738, 817
BseAI TCCGGA 1 cut(s) 217
BseDI CCNNGG 3 cut(s) 474, 657, 822
BseGI GGATG 4 cut(s) 20, 64, 86, 871
BseLI CCNNNNNNNGG 2 cut(s) 722, 754
BseMII CTCAG 3 cut(s) 299, 420, 435
BseNI ACTGG 2 cut(s) 738, 817
BseRI GAGGAG 3 cut(s) 51, 60, 342
BseX3I CGGCCG 1 cut(s) 236
BseXI GCAGC 1 cut(s) 629
BsgI GTGCAG 1 cut(s) 288
Bsh1236I CGCG 3 cut(s) 129, 209, 915
Bsh1285I CGRYCG 2 cut(s) 239, 344
BshFI GGCC 4 cut(s) 238, 632, 758, 853
BsiEI CGRYCG 2 cut(s) 239, 344
BsiHKAI GWGCWC 1 cut(s) 339
BsiSI CCGG 4 cut(s) 90, 218, 239, 419
BslFI GGGAC 1 cut(s) 523
BslI CCNNNNNNNGG 2 cut(s) 722, 754
BsmAI GTCTC 2 cut(s) 524, 821
BsmBI CGTCTC 1 cut(s) 524
BsmFI GGGAC 1 cut(s) 523
BsmI GAATGC 2 cut(s) 411, 973
BsnI GGCC 4 cut(s) 238, 632, 758, 853
Bsp119I TTCGAA 1 cut(s) 80
Bsp1286I GDGCHC 1 cut(s) 339
Bsp13I TCCGGA 1 cut(s) 217
Bsp143I GATC 4 cut(s) 175, 317, 469, 561
Bsp1720I GCTNAGC 1 cut(s) 444
BspACI CCGC 5 cut(s) 207, 257, 650, 915, 935
BspANI GGCC 4 cut(s) 238, 632, 758, 853
BspCNI CTCAG 3 cut(s) 298, 421, 436
BspEI TCCGGA 1 cut(s) 217
BspFNI CGCG 3 cut(s) 129, 209, 915
BspLI GGNNCC 6 cut(s) 177, 471, 480, 511, 655, 945
BspPI GGATC 4 cut(s) 170, 183, 464, 477
BspQI GCTCTTC 1 cut(s) 52
BspT104I TTCGAA 1 cut(s) 80
BsrFI RCCGGY 2 cut(s) 238, 418
BsrI ACTGG 2 cut(s) 738, 817
BssAI RCCGGY 2 cut(s) 238, 418
BssECI CCNNGG 3 cut(s) 474, 657, 822
BssMI GATC 4 cut(s) 175, 317, 469, 561
BssNI GRCGYC 1 cut(s) 5
BssSI CACGAG 1 cut(s) 516
BssT1I CCWWGG 2 cut(s) 474, 657
Bst2BI CACGAG 1 cut(s) 516
Bst4CI ACNGT 4 cut(s) 535, 604, 669, 832
Bst6I CTCTTC 1 cut(s) 52
BstACI GRCGYC 1 cut(s) 5
BstBAI YACGTR 1 cut(s) 710
BstBI TTCGAA 1 cut(s) 80
BstC8I GCNNGC 3 cut(s) 195, 420, 735
BstDEI CTNAG 3 cut(s) 285, 429, 444
BstDSI CCRYGG 1 cut(s) 822
BstF5I GGATG 4 cut(s) 20, 64, 86, 871
BstFNI CGCG 3 cut(s) 129, 209, 915
BstHHI GCGC 2 cut(s) 131, 915
BstKTI GATC 4 cut(s) 178, 320, 472, 564
BstMAI GTCTC 2 cut(s) 524, 821
BstMBI GATC 4 cut(s) 175, 317, 469, 561
BstMCI CGRYCG 2 cut(s) 239, 344
BstMWI GCNNNNNNNGC 5 cut(s) 128, 203, 373, 415, 875
BstNSI RCATGY 1 cut(s) 686
BstSCI CCNGG 1 cut(s) 89
BstSFI CTRYAG 1 cut(s) 831
BstUI CGCG 3 cut(s) 129, 209, 915
BstV1I GCAGC 1 cut(s) 629
BstV2I GAAGAC 2 cut(s) 113, 288
BstX2I RGATCY 2 cut(s) 175, 469
BstYI RGATCY 2 cut(s) 175, 469
BstZI CGGCCG 1 cut(s) 236
BsuRI GGCC 4 cut(s) 238, 632, 758, 853
BtgI CCRYGG 1 cut(s) 822
BtgZI GCGATG 1 cut(s) 707
BtrI CACGTC 1 cut(s) 940
BtsCI GGATG 4 cut(s) 20, 64, 86, 871
BtsI GCAGTG 1 cut(s) 429
BtsIMutI CAGTG 4 cut(s) 327, 429, 467, 745
Cac8I GCNNGC 3 cut(s) 195, 420, 735
CaiI CAGNNNCTG 2 cut(s) 428, 466
CfoI GCGC 2 cut(s) 131, 915
Cfr10I RCCGGY 2 cut(s) 238, 418
Cfr13I GGNCC 2 cut(s) 510, 756
Csp6I GTAC 2 cut(s) 596, 713
CspCI CAANNNNNGTGG 2 cut(s) 345, 380
CviAII CATG 4 cut(s) 25, 292, 683, 862
CviQI GTAC 2 cut(s) 596, 713
DdeI CTNAG 3 cut(s) 285, 429, 444
DpnI GATC 4 cut(s) 177, 319, 471, 563
DpnII GATC 4 cut(s) 175, 317, 469, 561
EaeI YGGCCR 1 cut(s) 236
EagI CGGCCG 1 cut(s) 236
Eam1104I CTCTTC 1 cut(s) 52
EarI CTCTTC 1 cut(s) 52
EclXI CGGCCG 1 cut(s) 236
Eco130I CCWWGG 2 cut(s) 474, 657
Eco147I AGGCCT 1 cut(s) 632
Eco47I GGWCC 1 cut(s) 510
Eco52I CGGCCG 1 cut(s) 236
Eco57I CTGAAG 2 cut(s) 443, 933
Eco72I CACGTG 1 cut(s) 710
EcoRI GAATTC 5 cut(s) 28, 82, 211, 817, 956
EcoT14I CCWWGG 2 cut(s) 474, 657
ErhI CCWWGG 2 cut(s) 474, 657
Esp3I CGTCTC 1 cut(s) 524
FaeI CATG 4 cut(s) 28, 295, 686, 865
FaqI GGGAC 1 cut(s) 523
FatI CATG 4 cut(s) 24, 291, 682, 861
FauI CCCGC 1 cut(s) 643
Fnu4HI GCNGC 3 cut(s) 207, 257, 618
FokI GGATG 4 cut(s) 7, 51, 73, 878
Fsp4HI GCNGC 3 cut(s) 207, 257, 618
FspBI CTAG 1 cut(s) 434
GlaI GCGC 2 cut(s) 130, 914
GluI GCNGC 3 cut(s) 207, 257, 618
HaeIII GGCC 4 cut(s) 238, 632, 758, 853
HapII CCGG 4 cut(s) 90, 218, 239, 419
HhaI GCGC 2 cut(s) 131, 915
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 4 cut(s) 28, 295, 686, 865
Hin6I GCGC 2 cut(s) 129, 913
HinP1I GCGC 2 cut(s) 129, 913
HincII GTYRAC 1 cut(s) 244
HindII GTYRAC 1 cut(s) 244
HindIII AAGCTT 1 cut(s) 224
HinfI GANTC 7 cut(s) 278, 545, 569, 697, 751, 891, 904
HpaI GTTAAC 1 cut(s) 244
HpaII CCGG 4 cut(s) 90, 218, 239, 419
Hpy166II GTNNAC 5 cut(s) 14, 244, 397, 665, 713
Hpy188I TCNGA 3 cut(s) 162, 550, 952
Hpy188III TCNNGA 6 cut(s) 218, 266, 380, 518, 748, 920
Hpy8I GTNNAC 5 cut(s) 14, 244, 397, 665, 713
HpyAV CCTTC 4 cut(s) 545, 726, 843, 957
HpyCH4III ACNGT 4 cut(s) 535, 604, 669, 832
HpyCH4IV ACGT 3 cut(s) 709, 840, 939
HpyCH4V TGCA 4 cut(s) 305, 580, 869, 971
HpyF10VI GCNNNNNNNGC 5 cut(s) 128, 203, 373, 415, 875
HpyF3I CTNAG 3 cut(s) 285, 429, 444
HpySE526I ACGT 3 cut(s) 709, 840, 939
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 4 cut(s) 28, 295, 686, 865
HspAI GCGC 2 cut(s) 129, 913
Kpn2I TCCGGA 1 cut(s) 217
KroI GCCGGC 1 cut(s) 418
KroNI GCCGGC 1 cut(s) 420
KspAI GTTAAC 1 cut(s) 244
Kzo9I GATC 4 cut(s) 175, 317, 469, 561
LguI GCTCTTC 1 cut(s) 52
LmnI GCTCC 1 cut(s) 614
Lsp1109I GCAGC 1 cut(s) 629
LweI GCATC 5 cut(s) 29, 567, 666, 720, 856
MaeI CTAG 1 cut(s) 434
MaeII ACGT 3 cut(s) 709, 840, 939
MaeIII GTNAC 2 cut(s) 116, 424
MalI GATC 4 cut(s) 177, 319, 471, 563
MboI GATC 4 cut(s) 175, 317, 469, 561
MboII GAAGA 8 cut(s) 39, 42, 69, 108, 118, 288, 449, 711
MflI RGATCY 2 cut(s) 175, 469
MhlI GDGCHC 1 cut(s) 339
MluCI AATT 7 cut(s) 28, 82, 211, 390, 817, 884, 956
MlyI GAGTC 3 cut(s) 272, 563, 900
MmeI TCCRAC 1 cut(s) 517
MroI TCCGGA 1 cut(s) 217
MroNI GCCGGC 1 cut(s) 418
MroXI GAANNNNTTC 1 cut(s) 225
MseI TTAA 3 cut(s) 243, 585, 978
MslI CAYNNNNRTG 1 cut(s) 404
MspI CCGG 4 cut(s) 90, 218, 239, 419
MspR9I CCNGG 1 cut(s) 91
Mva1269I GAATGC 2 cut(s) 411, 973
MvnI CGCG 3 cut(s) 129, 209, 915
MwoI GCNNNNNNNGC 5 cut(s) 128, 203, 373, 415, 875
NaeI GCCGGC 1 cut(s) 420
NciI CCSGG 1 cut(s) 91
NdeII GATC 4 cut(s) 175, 317, 469, 561
NgoMIV GCCGGC 1 cut(s) 418
NlaIII CATG 4 cut(s) 28, 295, 686, 865
NlaIV GGNNCC 6 cut(s) 177, 471, 480, 511, 655, 945
NmuCI GTSAC 1 cut(s) 424
NspI RCATGY 1 cut(s) 686
NspV TTCGAA 1 cut(s) 80
PceI AGGCCT 1 cut(s) 632
PciSI GCTCTTC 1 cut(s) 52
PctI GAATGC 2 cut(s) 411, 973
PdiI GCCGGC 1 cut(s) 420
PdmI GAANNNNTTC 1 cut(s) 225
PfeI GAWTC 4 cut(s) 545, 697, 751, 904
PfoI TCCNGGA 1 cut(s) 89
PkrI GCNGC 3 cut(s) 208, 258, 619
PleI GAGTC 3 cut(s) 272, 563, 899
PmaCI CACGTG 1 cut(s) 710
PmlI CACGTG 1 cut(s) 710
PpsI GAGTC 3 cut(s) 272, 563, 899
Ppu21I YACGTR 1 cut(s) 710
PsiI TTATAA 1 cut(s) 330
PspCI CACGTG 1 cut(s) 710
PspN4I GGNNCC 6 cut(s) 177, 471, 480, 511, 655, 945
PspPI GGNCC 2 cut(s) 510, 756
PstNI CAGNNNCTG 2 cut(s) 428, 466
PsuI RGATCY 2 cut(s) 175, 469
RsaI GTAC 2 cut(s) 597, 714
RsaNI GTAC 2 cut(s) 596, 713
RseI CAYNNNNRTG 1 cut(s) 404
SapI GCTCTTC 1 cut(s) 52
SaqAI TTAA 3 cut(s) 243, 585, 978
SatI GCNGC 3 cut(s) 207, 257, 618
Sau3AI GATC 4 cut(s) 175, 317, 469, 561
Sau96I GGNCC 2 cut(s) 510, 756
SchI GAGTC 3 cut(s) 272, 563, 900
ScrFI CCNGG 1 cut(s) 91
SduI GDGCHC 1 cut(s) 339
SfaNI GCATC 5 cut(s) 29, 567, 666, 720, 856
SfcI CTRYAG 1 cut(s) 831
SfuI TTCGAA 1 cut(s) 80
SinI GGWCC 1 cut(s) 510
SmiMI CAYNNNNRTG 1 cut(s) 404
Sse9I AATT 7 cut(s) 28, 82, 211, 390, 817, 884, 956
SseBI AGGCCT 1 cut(s) 632
SsiI CCGC 5 cut(s) 207, 257, 650, 915, 935
SspMI CTAG 1 cut(s) 434
StuI AGGCCT 1 cut(s) 632
StyD4I CCNGG 1 cut(s) 89
StyI CCWWGG 2 cut(s) 474, 657
TaaI ACNGT 4 cut(s) 535, 604, 669, 832
TaiI ACGT 3 cut(s) 712, 843, 942
TaqI TCGA 2 cut(s) 80, 960
TaqII GACCGA 1 cut(s) 358
TasI AATT 7 cut(s) 28, 82, 211, 390, 817, 884, 956
TauI GCSGC 2 cut(s) 209, 259
TfiI GAWTC 4 cut(s) 545, 697, 751, 904
Tru1I TTAA 3 cut(s) 243, 585, 978
Tru9I TTAA 3 cut(s) 243, 585, 978
TscAI CASTG 4 cut(s) 327, 429, 467, 745
TseFI GTSAC 1 cut(s) 424
TseI GCWGC 1 cut(s) 617
Tsp45I GTSAC 1 cut(s) 424
TspDTI ATGAA 2 cut(s) 41, 75
TspGWI ACGGA 1 cut(s) 811
TspRI CASTG 4 cut(s) 327, 429, 467, 745
VpaK11BI GGWCC 1 cut(s) 510
XapI RAATTY 6 cut(s) 28, 82, 211, 817, 884, 956
XceI RCATGY 1 cut(s) 686
XmnI GAANNNNTTC 1 cut(s) 225
XspI CTAG 1 cut(s) 434
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.