Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0010248

Physical Location & Seq

Genomic Coordinates Reverse (-)

28388569 .. 28391426

Gene Structure 2858 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G321000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 981 bp

ATGGCCACTAGTTTGCATTTACCAATCTCAATATCAGCGACTTCTTCATCGTCACTTAGAGCCAAAAATACTCGAAGGTTCGCAGCTTTTTGTTCCATTAACTCGAAAGCAAAAGTCAAAATCCCCATTCCTCCAATAAACCCTAAGGACCCGTTTCTTTCAAGGCTCAGTTCAGTGGCTGCCAATTCACCCGAAACTTTACTGAACCGACCTGTTCAAAATTCTGACTCTCTTCCGTACTTGGATTTGTTTGATGAACCTAAGCTCATGGCCACACCTGCCCAAGTGGAAAGATCTGTTTCTTACAACGAGCATAGGCCAAGGAAACCACCTCCAGACTTGCCGTCATTGCTACTCCACGGGAGAATAGTTTATATTGGCATGCCTTTAGTACCAGCAGTCACAGAGCTTGTTGTTGCGGAATTGATGTATCTGCAATGGATGGATCCTAAACAACCAATATATATTTATATCAATTCTACCGGAACCACTCGTGATGACGGTGAAACGGTTGGCATGGAGTCAGAGGGTTTTGCTATCTATGATGCAATGATGCAGTTGAAAAATGAGATACATACGGTTGCCGTTGGGGCTGCTATAGGTCAAGCTTGTCTATTGCTTTCAGCAGGAACTAAGGGCAAACGATTCATGATGCCACATGCCAAAGCCATGATCCAACAGCCTCGTGTGCCATCATCTGGGCTGATGCCTGCTAGTGACGTTCTTATTCGTGCAAAAGAGGTAATGACAAATAGGGACATTCTTATAAAGCTTCTGGCCAAGCACACAGGAAATTCAGTAGAGGCCGTTACTAATGTGATGAGAAGACCATATTATATGGATTCTACAACTGCTAAAGAATTCGGGGTGATTGACAAGATCCTTTGGCGTGGTCAAGAAAAGATAATGGCAGATGTAGCATCCCCTGAGGAATGGGACAAGAAAGCTGGTGTCAAAGTTGTAGATGAACTTAGTCTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CLP_protease

Protein Analysis

327

Amino Acids

35.97

Weight (kDa)

9.04

Isoelectric Point (pI)

44.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010248)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09130 AT1G09130
fragaria_vesca	FvH4_6g06550 FvH4_6g06550 FvH4_6g06550
malus_domestica	MD04G1200900.v1.1 MD12G1213400.v1.1
prunus_persica	Prupe.6G321000_v2.0.a1
pyrus_communis	pycom04g17700 pycom12g19930
rosa_chinensis	RchiOBHm_Chr3g0455701
rosa_laevigata	RLG00000025339
rosa_multiflora	Rmu_sc0002883.1_g000012 Rmu_sc0013268.1_g000005
rosa_roxburghii	Rroxscaffold_6G00423570 Rroxscaffold_6G00424080
rosa_rugosa	Rorug03G0009300
rosa_samantha	Rh3AG068900 Rh3DG071400
rosa_wichuraiana	Rw3G005540 Rw3G005910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	767
AarI	CACCTGC	1 cut(s)	286
Acc36I	ACCTGC	1 cut(s)	286
AccB7I	CCANNNNNTGG	1 cut(s)	698
AciI	CCGC	1 cut(s)	419
AclWI	GGATC	4 cut(s)	440, 453, 667, 874
AcoI	YGGCCR	3 cut(s)	3, 270, 777
AcsI	RAATTY	3 cut(s)	220, 793, 860
AfaI	GTAC	2 cut(s)	239, 393
AfiI	CCNNNNNNNGG	1 cut(s)	698
AgsI	TTSAA	3 cut(s)	162, 218, 562
AhdI	GACNNNNNGTC	1 cut(s)	343
AhlI	ACTAGT	1 cut(s)	8
AluBI	AGCT	6 cut(s)	86, 265, 409, 608, 772, 947
AluI	AGCT	6 cut(s)	86, 265, 409, 608, 772, 947
AlwI	GGATC	4 cut(s)	440, 453, 667, 874
AlwNI	CAGNNNCTG	1 cut(s)	179
AoxI	GGCC	5 cut(s)	3, 270, 317, 777, 804
ApeKI	GCWGC	3 cut(s)	83, 179, 593
ApoI	RAATTY	3 cut(s)	220, 793, 860
AspS9I	GGNCC	1 cut(s)	148
AsuHPI	GGTGA	3 cut(s)	180, 515, 880
AvaII	GGWCC	1 cut(s)	148
AxyI	CCTNAGG	2 cut(s)	144, 927
BalI	TGGCCA	3 cut(s)	5, 272, 779
BamHI	GGATCC	1 cut(s)	445
BauI	CACGAG	2 cut(s)	492, 684
BbsI	GAAGAC	1 cut(s)	832
BbvI	GCAGC	3 cut(s)	95, 166, 580
BccI	CCATC	2 cut(s)	436, 700
BceAI	ACGGC	3 cut(s)	328, 569, 791
BcuI	ACTAGT	1 cut(s)	8
BfaI	CTAG	3 cut(s)	9, 714, 979
BfmI	CTRYAG	1 cut(s)	597
BfuAI	ACCTGC	1 cut(s)	286
BglI	GCCNNNNNGGC	1 cut(s)	590
BglII	AGATCT	1 cut(s)	293
BisI	GCNGC	3 cut(s)	84, 180, 594
BlsI	GCNGC	3 cut(s)	85, 181, 595
Bme18I	GGWCC	1 cut(s)	148
BmeRI	GACNNNNNGTC	1 cut(s)	343
BmgT120I	GGNCC	1 cut(s)	148
BmiI	GGNNCC	3 cut(s)	150, 447, 487
BmsI	GCATC	5 cut(s)	535, 543, 642, 696, 929
BpiI	GAAGAC	1 cut(s)	832
BpmI	CTGGAG	1 cut(s)	318
Bpu10I	CCTNAGC	1 cut(s)	261
BsaJI	CCNNGG	2 cut(s)	320, 358
BsaWI	WCCGGW	1 cut(s)	482
Bsc4I	CCNNNNNNNGG	1 cut(s)	698
Bse21I	CCTNAGG	2 cut(s)	144, 927
Bse3DI	GCAATG	3 cut(s)	347, 443, 555
BseDI	CCNNGG	2 cut(s)	320, 358
BseGI	GGATG	2 cut(s)	447, 920
BseLI	CCNNNNNNNGG	1 cut(s)	698
BseMI	GCAATG	3 cut(s)	347, 443, 555
BseMII	CTCAG	2 cut(s)	181, 918
BseXI	GCAGC	3 cut(s)	95, 166, 580
BshFI	GGCC	5 cut(s)	5, 272, 319, 779, 806
BsiSI	CCGG	1 cut(s)	483
BslFI	GGGAC	2 cut(s)	770, 950
BslI	CCNNNNNNNGG	1 cut(s)	698
BsmFI	GGGAC	2 cut(s)	770, 950
BsnI	GGCC	5 cut(s)	5, 272, 319, 779, 806
Bsp143I	GATC	4 cut(s)	293, 445, 672, 879
BspACI	CCGC	1 cut(s)	419
BspANI	GGCC	5 cut(s)	5, 272, 319, 779, 806
BspCNI	CTCAG	2 cut(s)	180, 919
BspHI	TCATGA	1 cut(s)	648
BspLI	GGNNCC	3 cut(s)	150, 447, 487
BspMI	ACCTGC	1 cut(s)	286
BspPI	GGATC	4 cut(s)	440, 453, 667, 874
BsrDI	GCAATG	3 cut(s)	347, 443, 555
BssECI	CCNNGG	2 cut(s)	320, 358
BssMI	GATC	4 cut(s)	293, 445, 672, 879
BssSI	CACGAG	2 cut(s)	492, 684
BssT1I	CCWWGG	1 cut(s)	320
Bst2BI	CACGAG	2 cut(s)	492, 684
Bst4CI	ACNGT	3 cut(s)	503, 511, 580
Bst6I	CTCTTC	1 cut(s)	237
BstC8I	GCNNGC	2 cut(s)	383, 711
BstDEI	CTNAG	7 cut(s)	56, 144, 167, 261, 633, 927, 971
BstDSI	CCRYGG	1 cut(s)	358
BstF5I	GGATG	2 cut(s)	447, 920
BstKTI	GATC	4 cut(s)	296, 448, 675, 882
BstMBI	GATC	4 cut(s)	293, 445, 672, 879
BstMWI	GCNNNNNNNGC	5 cut(s)	278, 349, 590, 688, 917
BstNSI	RCATGY	2 cut(s)	385, 662
BstSFI	CTRYAG	1 cut(s)	597
BstV1I	GCAGC	3 cut(s)	95, 166, 580
BstV2I	GAAGAC	1 cut(s)	832
BstX2I	RGATCY	3 cut(s)	293, 445, 879
BstYI	RGATCY	3 cut(s)	293, 445, 879
Bsu36I	CCTNAGG	2 cut(s)	144, 927
BsuRI	GGCC	5 cut(s)	5, 272, 319, 779, 806
BtgI	CCRYGG	1 cut(s)	358
BtsCI	GGATG	2 cut(s)	447, 920
BtsIMutI	CAGTG	1 cut(s)	180
BveI	ACCTGC	1 cut(s)	286
Cac8I	GCNNGC	2 cut(s)	383, 711
CaiI	CAGNNNCTG	1 cut(s)	179
CciI	TCATGA	1 cut(s)	648
Cfr13I	GGNCC	1 cut(s)	148
Csp6I	GTAC	2 cut(s)	238, 392
CviAII	CATG	6 cut(s)	268, 382, 517, 649, 659, 670
CviQI	GTAC	2 cut(s)	238, 392
DdeI	CTNAG	7 cut(s)	56, 144, 167, 261, 633, 927, 971
DpnI	GATC	4 cut(s)	295, 447, 674, 881
DpnII	GATC	4 cut(s)	293, 445, 672, 879
DriI	GACNNNNNGTC	1 cut(s)	343
EaeI	YGGCCR	3 cut(s)	3, 270, 777
Eam1104I	CTCTTC	1 cut(s)	237
Eam1105I	GACNNNNNGTC	1 cut(s)	343
EarI	CTCTTC	1 cut(s)	237
Eco130I	CCWWGG	1 cut(s)	320
Eco47I	GGWCC	1 cut(s)	148
Eco81I	CCTNAGG	2 cut(s)	144, 927
EcoO109I	RGGNCCY	1 cut(s)	148
EcoRI	GAATTC	1 cut(s)	860
EcoT14I	CCWWGG	1 cut(s)	320
ErhI	CCWWGG	1 cut(s)	320
FaeI	CATG	6 cut(s)	271, 385, 520, 652, 662, 673
FaqI	GGGAC	2 cut(s)	770, 950
FatI	CATG	6 cut(s)	267, 381, 516, 648, 658, 669
Fnu4HI	GCNGC	3 cut(s)	84, 180, 594
FokI	GGATG	2 cut(s)	454, 907
Fsp4HI	GCNGC	3 cut(s)	84, 180, 594
FspBI	CTAG	3 cut(s)	9, 714, 979
GluI	GCNGC	3 cut(s)	84, 180, 594
GsuI	CTGGAG	1 cut(s)	318
HaeIII	GGCC	5 cut(s)	5, 272, 319, 779, 806
HapII	CCGG	1 cut(s)	483
Hin1II	CATG	6 cut(s)	271, 385, 520, 652, 662, 673
HindIII	AAGCTT	2 cut(s)	606, 770
HinfI	GANTC	4 cut(s)	227, 521, 645, 842
HpaII	CCGG	1 cut(s)	483
HphI	GGTGA	3 cut(s)	180, 515, 880
Hpy188I	TCNGA	2 cut(s)	226, 526
Hpy188III	TCNNGA	4 cut(s)	335, 494, 649, 896
HpyAV	CCTTC	1 cut(s)	69
HpyCH4III	ACNGT	3 cut(s)	503, 511, 580
HpyCH4IV	ACGT	1 cut(s)	720
HpyCH4V	TGCA	5 cut(s)	16, 436, 548, 556, 734
HpyF10VI	GCNNNNNNNGC	5 cut(s)	278, 349, 590, 688, 917
HpyF3I	CTNAG	7 cut(s)	56, 144, 167, 261, 633, 927, 971
HpySE526I	ACGT	1 cut(s)	720
Hsp92II	CATG	6 cut(s)	271, 385, 520, 652, 662, 673
Kzo9I	GATC	4 cut(s)	293, 445, 672, 879
Lsp1109I	GCAGC	3 cut(s)	95, 166, 580
LweI	GCATC	5 cut(s)	535, 543, 642, 696, 929
MaeI	CTAG	3 cut(s)	9, 714, 979
MaeII	ACGT	1 cut(s)	720
MaeIII	GTNAC	4 cut(s)	51, 400, 716, 808
MalI	GATC	4 cut(s)	295, 447, 674, 881
MboI	GATC	4 cut(s)	293, 445, 672, 879
MboII	GAAGA	3 cut(s)	36, 224, 837
MflI	RGATCY	3 cut(s)	293, 445, 879
MlsI	TGGCCA	3 cut(s)	5, 272, 779
MluCI	AATT	6 cut(s)	184, 220, 422, 475, 793, 860
MluNI	TGGCCA	3 cut(s)	5, 272, 779
MlyI	GAGTC	2 cut(s)	221, 530
MmeI	TCCRAC	1 cut(s)	700
MnlI	CCTC	7 cut(s)	141, 342, 520, 693, 733, 796, 922
Mox20I	TGGCCA	3 cut(s)	5, 272, 779
MscI	TGGCCA	3 cut(s)	5, 272, 779
MseI	TTAA	1 cut(s)	99
Msp20I	TGGCCA	3 cut(s)	5, 272, 779
MspI	CCGG	1 cut(s)	483
MwoI	GCNNNNNNNGC	5 cut(s)	278, 349, 590, 688, 917
NdeII	GATC	4 cut(s)	293, 445, 672, 879
NlaIII	CATG	6 cut(s)	271, 385, 520, 652, 662, 673
NlaIV	GGNNCC	3 cut(s)	150, 447, 487
NmuCI	GTSAC	3 cut(s)	51, 400, 716
NspI	RCATGY	2 cut(s)	385, 662
PaeI	GCATGC	1 cut(s)	385
PagI	TCATGA	1 cut(s)	648
PaqCI	CACCTGC	1 cut(s)	286
PfeI	GAWTC	2 cut(s)	645, 842
PflMI	CCANNNNNTGG	1 cut(s)	698
PkrI	GCNGC	3 cut(s)	85, 181, 595
PleI	GAGTC	2 cut(s)	221, 529
PpsI	GAGTC	2 cut(s)	221, 529
PpuMI	RGGWCCY	1 cut(s)	148
PsiI	TTATAA	1 cut(s)	767
Psp5II	RGGWCCY	1 cut(s)	148
PspN4I	GGNNCC	3 cut(s)	150, 447, 487
PspPI	GGNCC	1 cut(s)	148
PspPPI	RGGWCCY	1 cut(s)	148
PstNI	CAGNNNCTG	1 cut(s)	179
PsuI	RGATCY	3 cut(s)	293, 445, 879
RsaI	GTAC	2 cut(s)	239, 393
RsaNI	GTAC	2 cut(s)	238, 392
SaqAI	TTAA	1 cut(s)	99
SatI	GCNGC	3 cut(s)	84, 180, 594
Sau3AI	GATC	4 cut(s)	293, 445, 672, 879
Sau96I	GGNCC	1 cut(s)	148
SchI	GAGTC	2 cut(s)	221, 530
SfaNI	GCATC	5 cut(s)	535, 543, 642, 696, 929
SfcI	CTRYAG	1 cut(s)	597
SinI	GGWCC	1 cut(s)	148
SpeI	ACTAGT	1 cut(s)	8
SphI	GCATGC	1 cut(s)	385
Sse9I	AATT	6 cut(s)	184, 220, 422, 475, 793, 860
SsiI	CCGC	1 cut(s)	419
SspMI	CTAG	3 cut(s)	9, 714, 979
StyI	CCWWGG	1 cut(s)	320
TaaI	ACNGT	3 cut(s)	503, 511, 580
TaiI	ACGT	1 cut(s)	723
TaqI	TCGA	2 cut(s)	73, 104
TasI	AATT	6 cut(s)	184, 220, 422, 475, 793, 860
TfiI	GAWTC	2 cut(s)	645, 842
Tru1I	TTAA	1 cut(s)	99
Tru9I	TTAA	1 cut(s)	99
TscAI	CASTG	1 cut(s)	180
TseFI	GTSAC	3 cut(s)	51, 400, 716
TseI	GCWGC	3 cut(s)	83, 179, 593
Tsp45I	GTSAC	3 cut(s)	51, 400, 716
TspDTI	ATGAA	4 cut(s)	36, 270, 637, 981
TspGWI	ACGGA	1 cut(s)	225
TspRI	CASTG	1 cut(s)	180
Van91I	CCANNNNNTGG	1 cut(s)	698
VpaK11BI	GGWCC	1 cut(s)	148
XapI	RAATTY	3 cut(s)	220, 793, 860
XceI	RCATGY	2 cut(s)	385, 662
XspI	CTAG	3 cut(s)	9, 714, 979

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.