Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0013268.1

Orthogroup ID

OG0010248

Physical Location & Seq

Genomic Coordinates Reverse (-)

17428 .. 20021

Gene Structure 2594 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0013268.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 963 bp

atggcgagcagtttgcagataccaatctgcacacccacctgttcatcctcacgaaagtctcgaaatttcacaaccttctgctccattaacgccaaagcaaaagccaaaatccccatccctcctataaaccctagggacccctttctctccaggctcgcctccgtcgctcgcaattcgccggaaaccttgctcaaccggccggccaacaactccgactcccttccctacttggatatattcgacgagcctaagctcatggccacccctgcccaagtggaaagatcagtttcttacaatgagcacagaccaaagaagccacctccagatttgccctcattgctactccatggaagaatagtttatatcggcatgcctcttgtaccagcagtcacagagcttattgttgcagaactgatgtatctgcaatggatggatcctaaacaaccaatctatatttatattaattcaactggaacaacacgtgatgatggtgaaacggttggcatggaatcggagggttttgccatctatgatgcgatgatgcagttgaaaaatgagatacatacggttgctgtcggggctgctataggtcaagcttgtctgttgcttgcagcaggaactaagggctaccggttcatgatgccacatgccaaagccatgatccagcagcctcgtgtcccgtcatctggactgatgcctgctagtgatgttcttattcgtgcaaaagaggtaataacaaatagggacactcttgtaaaactcctgtccaagcacacaggaaattccgtggaagctgtatctaatcttatgagaaggccatattatatggattctacaaccgctaaacaattcggtgtgattgacaagatcctgtggcgtggtcaagaaaagataatggcagatgtagcctcccctgaggattgggacaagaatgctggcatcaaagttgcagatgaaatttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CLP_protease

Protein Analysis

320

Amino Acids

35.36

Weight (kDa)

8.76

Isoelectric Point (pI)

45.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010248)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09130 AT1G09130
fragaria_vesca	FvH4_6g06550 FvH4_6g06550 FvH4_6g06550
malus_domestica	MD04G1200900.v1.1 MD12G1213400.v1.1
prunus_persica	Prupe.6G321000_v2.0.a1
pyrus_communis	pycom04g17700 pycom12g19930
rosa_chinensis	RchiOBHm_Chr3g0455701
rosa_laevigata	RLG00000025339
rosa_multiflora	Rmu_sc0002883.1_g000012 Rmu_sc0013268.1_g000005
rosa_roxburghii	Rroxscaffold_6G00423570 Rroxscaffold_6G00424080
rosa_rugosa	Rorug03G0009300
rosa_samantha	Rh3AG068900 Rh3DG071400
rosa_wichuraiana	Rw3G005540 Rw3G005910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	840
AclWI	GGATC	4 cut(s)	428, 441, 655, 862
AcoI	YGGCCR	3 cut(s)	197, 201, 258
AcsI	RAATTY	3 cut(s)	64, 781, 957
AcvI	CACGTG	1 cut(s)	482
AfaI	GTAC	1 cut(s)	381
AfiI	CCNNNNNNNGG	1 cut(s)	686
AflIII	ACRYGT	1 cut(s)	479
AgeI	ACCGGT	1 cut(s)	630
AgsI	TTSAA	2 cut(s)	468, 550
AjnI	CCWGG	1 cut(s)	149
AluBI	AGCT	4 cut(s)	253, 397, 596, 794
AluI	AGCT	4 cut(s)	253, 397, 596, 794
Alw21I	GWGCWC	1 cut(s)	303
Alw26I	GTCTC	1 cut(s)	63
AlwI	GGATC	4 cut(s)	428, 441, 655, 862
AoxI	GGCC	4 cut(s)	197, 201, 258, 815
ApeKI	GCWGC	3 cut(s)	581, 611, 667
ApoI	RAATTY	3 cut(s)	64, 781, 957
AseI	ATTAAT	1 cut(s)	462
AsiGI	ACCGGT	1 cut(s)	630
AspA2I	CCTAGG	1 cut(s)	131
AspS9I	GGNCC	1 cut(s)	136
AsuHPI	GGTGA	1 cut(s)	503
AvaII	GGWCC	1 cut(s)	136
AvrII	CCTAGG	1 cut(s)	131
AxyI	CCTNAGG	1 cut(s)	915
BaeI	ACNNNNGTAYC	2 cut(s)	401, 434
BalI	TGGCCA	1 cut(s)	260
BamHI	GGATCC	1 cut(s)	433
BauI	CACGAG	1 cut(s)	672
BbrPI	CACGTG	1 cut(s)	482
Bbv12I	GWGCWC	1 cut(s)	303
BbvI	GCAGC	3 cut(s)	568, 623, 679
BccI	CCATC	4 cut(s)	122, 424, 482, 533
BcgI	CGANNNNNNTGC	1 cut(s)	29
BciT130I	CCWGG	1 cut(s)	151
BcoDI	GTCTC	1 cut(s)	63
BfaI	CTAG	2 cut(s)	132, 702
BfmI	CTRYAG	1 cut(s)	585
BisI	GCNGC	3 cut(s)	582, 612, 668
BlnI	CCTAGG	1 cut(s)	131
BlsI	GCNGC	3 cut(s)	583, 613, 669
Bme1390I	CCNGG	1 cut(s)	151
Bme18I	GGWCC	1 cut(s)	136
BmgT120I	GGNCC	1 cut(s)	136
BmiI	GGNNCC	3 cut(s)	137, 138, 435
BmrFI	CCNGG	1 cut(s)	151
BmsI	GCATC	5 cut(s)	523, 531, 630, 684, 948
BpmI	CTGGAG	2 cut(s)	133, 306
Bpu10I	CCTNAGC	1 cut(s)	249
BsaAI	YACGTR	1 cut(s)	482
BsaBI	GATNNNNATC	1 cut(s)	23
BsaJI	CCNNGG	3 cut(s)	131, 346, 786
BsaWI	WCCGGW	1 cut(s)	630
BsaXI	ACNNNNNCTCC	2 cut(s)	200, 230
Bsc4I	CCNNNNNNNGG	1 cut(s)	686
Bse118I	RCCGGY	3 cut(s)	195, 199, 630
Bse1I	ACTGG	1 cut(s)	475
Bse21I	CCTNAGG	1 cut(s)	915
Bse3DI	GCAATG	2 cut(s)	335, 431
Bse8I	GATNNNNATC	1 cut(s)	23
BseBI	CCWGG	1 cut(s)	151
BseDI	CCNNGG	3 cut(s)	131, 346, 786
BseGI	GGATG	3 cut(s)	44, 114, 435
BseJI	GATNNNNATC	1 cut(s)	23
BseLI	CCNNNNNNNGG	1 cut(s)	686
BseMI	GCAATG	2 cut(s)	335, 431
BseMII	CTCAG	1 cut(s)	906
BseNI	ACTGG	1 cut(s)	475
BseX3I	CGGCCG	1 cut(s)	197
BseXI	GCAGC	3 cut(s)	568, 623, 679
BsgI	GTGCAG	1 cut(s)	13
Bsh1285I	CGRYCG	1 cut(s)	200
BshFI	GGCC	4 cut(s)	199, 203, 260, 817
BshTI	ACCGGT	1 cut(s)	630
BsiEI	CGRYCG	1 cut(s)	200
BsiHKAI	GWGCWC	1 cut(s)	303
BsiSI	CCGG	4 cut(s)	179, 196, 200, 631
BslFI	GGGAC	4 cut(s)	149, 662, 758, 938
BslI	CCNNNNNNNGG	1 cut(s)	686
BsmAI	GTCTC	1 cut(s)	63
BsmFI	GGGAC	4 cut(s)	149, 662, 758, 938
BsmI	GAATGC	1 cut(s)	937
BsnI	GGCC	4 cut(s)	199, 203, 260, 817
Bsp1286I	GDGCHC	1 cut(s)	303
Bsp143I	GATC	4 cut(s)	281, 433, 660, 867
Bsp19I	CCATGG	1 cut(s)	346
BspACI	CCGC	1 cut(s)	840
BspANI	GGCC	4 cut(s)	199, 203, 260, 817
BspCNI	CTCAG	1 cut(s)	907
BspHI	TCATGA	1 cut(s)	636
BspLI	GGNNCC	3 cut(s)	137, 138, 435
BspPI	GGATC	4 cut(s)	428, 441, 655, 862
BsrDI	GCAATG	2 cut(s)	335, 431
BsrFI	RCCGGY	3 cut(s)	195, 199, 630
BsrI	ACTGG	1 cut(s)	475
BssAI	RCCGGY	3 cut(s)	195, 199, 630
BssECI	CCNNGG	3 cut(s)	131, 346, 786
BssMI	GATC	4 cut(s)	281, 433, 660, 867
BssSI	CACGAG	1 cut(s)	672
BssT1I	CCWWGG	2 cut(s)	131, 346
Bst2BI	CACGAG	1 cut(s)	672
Bst2UI	CCWGG	1 cut(s)	151
Bst4CI	ACNGT	2 cut(s)	499, 568
BstBAI	YACGTR	1 cut(s)	482
BstC8I	GCNNGC	8 cut(s)	7, 156, 169, 201, 371, 609, 699, 937
BstDEI	CTNAG	3 cut(s)	249, 621, 915
BstDSI	CCRYGG	2 cut(s)	346, 786
BstF5I	GGATG	3 cut(s)	44, 114, 435
BstKTI	GATC	4 cut(s)	284, 436, 663, 870
BstMAI	GTCTC	1 cut(s)	63
BstMBI	GATC	4 cut(s)	281, 433, 660, 867
BstMCI	CGRYCG	1 cut(s)	200
BstMWI	GCNNNNNNNGC	6 cut(s)	164, 196, 266, 337, 578, 905
BstNI	CCWGG	1 cut(s)	151
BstNSI	RCATGY	2 cut(s)	373, 650
BstSCI	CCNGG	1 cut(s)	149
BstSFI	CTRYAG	1 cut(s)	585
BstV1I	GCAGC	3 cut(s)	568, 623, 679
BstX2I	RGATCY	2 cut(s)	433, 867
BstYI	RGATCY	2 cut(s)	433, 867
BstZI	CGGCCG	1 cut(s)	197
Bsu36I	CCTNAGG	1 cut(s)	915
BsuRI	GGCC	4 cut(s)	199, 203, 260, 817
BtgI	CCRYGG	2 cut(s)	346, 786
BtgZI	GCGATG	1 cut(s)	551
BtsCI	GGATG	3 cut(s)	44, 114, 435
Cac8I	GCNNGC	8 cut(s)	7, 156, 169, 201, 371, 609, 699, 937
CciI	TCATGA	1 cut(s)	636
Cfr10I	RCCGGY	3 cut(s)	195, 199, 630
Cfr13I	GGNCC	1 cut(s)	136
Csp6I	GTAC	1 cut(s)	380
CspAI	ACCGGT	1 cut(s)	630
CviAII	CATG	7 cut(s)	256, 347, 370, 505, 637, 647, 658
CviQI	GTAC	1 cut(s)	380
DdeI	CTNAG	3 cut(s)	249, 621, 915
DpnI	GATC	4 cut(s)	283, 435, 662, 869
DpnII	GATC	4 cut(s)	281, 433, 660, 867
EaeI	YGGCCR	3 cut(s)	197, 201, 258
EagI	CGGCCG	1 cut(s)	197
EclXI	CGGCCG	1 cut(s)	197
Eco130I	CCWWGG	2 cut(s)	131, 346
Eco47I	GGWCC	1 cut(s)	136
Eco52I	CGGCCG	1 cut(s)	197
Eco72I	CACGTG	1 cut(s)	482
Eco81I	CCTNAGG	1 cut(s)	915
EcoO109I	RGGNCCY	1 cut(s)	136
EcoRII	CCWGG	1 cut(s)	149
EcoT14I	CCWWGG	2 cut(s)	131, 346
ErhI	CCWWGG	2 cut(s)	131, 346
FaeI	CATG	7 cut(s)	259, 350, 373, 508, 640, 650, 661
FaqI	GGGAC	4 cut(s)	149, 662, 758, 938
FatI	CATG	7 cut(s)	255, 346, 369, 504, 636, 646, 657
Fnu4HI	GCNGC	3 cut(s)	582, 612, 668
FokI	GGATG	3 cut(s)	31, 101, 442
FseI	GGCCGGCC	1 cut(s)	203
Fsp4HI	GCNGC	3 cut(s)	582, 612, 668
FspBI	CTAG	2 cut(s)	132, 702
GluI	GCNGC	3 cut(s)	582, 612, 668
GsuI	CTGGAG	2 cut(s)	133, 306
HaeIII	GGCC	4 cut(s)	199, 203, 260, 817
HapII	CCGG	4 cut(s)	179, 196, 200, 631
Hin1II	CATG	7 cut(s)	259, 350, 373, 508, 640, 650, 661
HindIII	AAGCTT	1 cut(s)	594
HinfI	GANTC	3 cut(s)	215, 509, 830
HpaII	CCGG	4 cut(s)	179, 196, 200, 631
HphI	GGTGA	1 cut(s)	503
Hpy188I	TCNGA	2 cut(s)	214, 514
Hpy188III	TCNNGA	6 cut(s)	51, 60, 323, 637, 687, 884
Hpy99I	CGWCG	2 cut(s)	167, 245
HpyAV	CCTTC	3 cut(s)	85, 230, 807
HpyCH4III	ACNGT	2 cut(s)	499, 568
HpyCH4IV	ACGT	1 cut(s)	481
HpyCH4V	TGCA	8 cut(s)	16, 30, 407, 424, 544, 611, 722, 950
HpyF10VI	GCNNNNNNNGC	6 cut(s)	164, 196, 266, 337, 578, 905
HpyF3I	CTNAG	3 cut(s)	249, 621, 915
HpySE526I	ACGT	1 cut(s)	481
Hsp92II	CATG	7 cut(s)	259, 350, 373, 508, 640, 650, 661
KflI	GGGWCCC	1 cut(s)	136
KroI	GCCGGC	1 cut(s)	199
KroNI	GCCGGC	1 cut(s)	201
Kzo9I	GATC	4 cut(s)	281, 433, 660, 867
LmnI	GCTCC	1 cut(s)	86
Lsp1109I	GCAGC	3 cut(s)	568, 623, 679
LweI	GCATC	5 cut(s)	523, 531, 630, 684, 948
MaeI	CTAG	2 cut(s)	132, 702
MaeII	ACGT	1 cut(s)	481
MaeIII	GTNAC	1 cut(s)	388
MalI	GATC	4 cut(s)	283, 435, 662, 869
MboI	GATC	4 cut(s)	281, 433, 660, 867
MboII	GAAGA	1 cut(s)	363
MflI	RGATCY	2 cut(s)	433, 867
MhlI	GDGCHC	1 cut(s)	303
MlsI	TGGCCA	1 cut(s)	260
MluCI	AATT	6 cut(s)	64, 172, 463, 781, 848, 957
MluNI	TGGCCA	1 cut(s)	260
MlyI	GAGTC	1 cut(s)	209
MmeI	TCCRAC	1 cut(s)	237
Mox20I	TGGCCA	1 cut(s)	260
MroNI	GCCGGC	1 cut(s)	199
MscI	TGGCCA	1 cut(s)	260
MseI	TTAA	2 cut(s)	87, 462
Msp20I	TGGCCA	1 cut(s)	260
MspI	CCGG	4 cut(s)	179, 196, 200, 631
MspR9I	CCNGG	1 cut(s)	151
Mva1269I	GAATGC	1 cut(s)	937
MvaI	CCWGG	1 cut(s)	151
MwoI	GCNNNNNNNGC	6 cut(s)	164, 196, 266, 337, 578, 905
NaeI	GCCGGC	1 cut(s)	201
NcoI	CCATGG	1 cut(s)	346
NdeII	GATC	4 cut(s)	281, 433, 660, 867
NgoMIV	GCCGGC	1 cut(s)	199
NlaIII	CATG	7 cut(s)	259, 350, 373, 508, 640, 650, 661
NlaIV	GGNNCC	3 cut(s)	137, 138, 435
NmuCI	GTSAC	1 cut(s)	388
NspI	RCATGY	2 cut(s)	373, 650
PaeI	GCATGC	1 cut(s)	373
PagI	TCATGA	1 cut(s)	636
PcsI	WCGNNNNNNNCGW	1 cut(s)	58
PctI	GAATGC	1 cut(s)	937
PdiI	GCCGGC	1 cut(s)	201
PfeI	GAWTC	2 cut(s)	509, 830
PinAI	ACCGGT	1 cut(s)	630
PkrI	GCNGC	3 cut(s)	583, 613, 669
PleI	GAGTC	1 cut(s)	209
PmaCI	CACGTG	1 cut(s)	482
PmlI	CACGTG	1 cut(s)	482
PpsI	GAGTC	1 cut(s)	209
Ppu21I	YACGTR	1 cut(s)	482
PpuMI	RGGWCCY	1 cut(s)	136
PshBI	ATTAAT	1 cut(s)	462
Psp5II	RGGWCCY	1 cut(s)	136
Psp6I	CCWGG	1 cut(s)	149
PspCI	CACGTG	1 cut(s)	482
PspGI	CCWGG	1 cut(s)	149
PspN4I	GGNNCC	3 cut(s)	137, 138, 435
PspPI	GGNCC	1 cut(s)	136
PspPPI	RGGWCCY	1 cut(s)	136
PsuI	RGATCY	2 cut(s)	433, 867
RigI	GGCCGGCC	1 cut(s)	203
RsaI	GTAC	1 cut(s)	381
RsaNI	GTAC	1 cut(s)	380
SaqAI	TTAA	2 cut(s)	87, 462
SatI	GCNGC	3 cut(s)	582, 612, 668
Sau3AI	GATC	4 cut(s)	281, 433, 660, 867
Sau96I	GGNCC	1 cut(s)	136
SchI	GAGTC	1 cut(s)	209
ScrFI	CCNGG	1 cut(s)	151
SduI	GDGCHC	1 cut(s)	303
SfaNI	GCATC	5 cut(s)	523, 531, 630, 684, 948
SfcI	CTRYAG	1 cut(s)	585
SinI	GGWCC	1 cut(s)	136
SphI	GCATGC	1 cut(s)	373
Sse9I	AATT	6 cut(s)	64, 172, 463, 781, 848, 957
SsiI	CCGC	1 cut(s)	840
SspMI	CTAG	2 cut(s)	132, 702
StyD4I	CCNGG	1 cut(s)	149
StyI	CCWWGG	2 cut(s)	131, 346
TaaI	ACNGT	2 cut(s)	499, 568
TaiI	ACGT	1 cut(s)	484
TaqI	TCGA	2 cut(s)	61, 240
TasI	AATT	6 cut(s)	64, 172, 463, 781, 848, 957
TfiI	GAWTC	2 cut(s)	509, 830
Tru1I	TTAA	2 cut(s)	87, 462
Tru9I	TTAA	2 cut(s)	87, 462
TseFI	GTSAC	1 cut(s)	388
TseI	GCWGC	3 cut(s)	581, 611, 667
Tsp45I	GTSAC	1 cut(s)	388
TspDTI	ATGAA	2 cut(s)	33, 625
TspGWI	ACGGA	2 cut(s)	151, 775
VpaK11BI	GGWCC	1 cut(s)	136
VspI	ATTAAT	1 cut(s)	462
XapI	RAATTY	3 cut(s)	64, 781, 957
XceI	RCATGY	2 cut(s)	373, 650
XmaJI	CCTAGG	1 cut(s)	131
XspI	CTAG	2 cut(s)	132, 702

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.