Rorug03G0009300

ATP-dependent Clp protease proteolytic

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0003540
Physical Location & Seq
Forward (+)
689483 .. 692659
3177 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0009300.1

Sequence Viewer

Length: 1056 bp
ATGTCTAACGCAACCATCAATGATAGTGAGGTTGACATTGTGATTGCAGCAATCAACCCGGACCTGAAATCATTCTTGAATGAATGGAGACCAATTATCTCGCAGTTTCATCTGATTATTGTCAAAGACCCTGATATGAAACAGGAACTCCAAATTCCAGAAGGATTTAATGCAGATGTCTTTACCAAAGCTGACATAACCCGCAAGGTGGGGTCTTCCACCTCTATTGTCTTCTCAGGTTACTCGTGCAGGTACTTCGGTTATCTGGTATCACGGAAAAAATATATCATCTCAATTGATGATGACTGCACCCCGGCTAGGGACAGCAATGGTGATTTAGTAGATGTTGTTGCTCAGCATATTGCCAACCTTAAAACTCCAGCAACCCCTTTCTTTTTTAACACACTCTATGATCCTTTCCGTAAGGGAGCAGATTTTGTTCGCGGTTACCCATTCAGCCTGCGGAGTGGGGTTACATGCGGGCTATCCTGTGGACTGTGGCTCAATTTGGCTGACCTTGATGCACCAACTCAGGCCCTCAAGCCAGAGCAGAGGAATTCTCGATATGTGGATGCTGTAATGACCGTTCCAGTGCGAGCCTTGCTGCCTGTAAGTGGAATCAACATTGCTTTTGATCGTGAGGTGGTTGGGCCAGCTTTGCTCCCAGCTTTGAGGTTGGCAGGTGAAGGAAAGTTTAGGTGGGAGACGATGGAAGATATATGGTGTGGAATGTGTGTAAAGGTTGTATGCGATCACCTGGGGCTTGGGGTCAAAAGTGGGATGCCTTATGTATGGAGAAAAGAACGAGGTGATGCCGTTCAAAGCTTGAAGAAAGAGTGGGAGGGGGTGAAGCTGATGGAGGAAGTGGTCCCTTTCTTTCAGTCGGTTAGGTTGCCTCGATCAGCAGTTACAGCAGAAGATTGTGTTGTCAGTATGGCAAAGACAGTGAAGGAGGAGCTGGGAAAGGTGGATCCTATGTTTGCTCGTGCATCGGATGCCATGGCGGAGTGGGTGAAGCTCTGGAAGTCAGTTGGATCCAGCTCATCTGGAGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CLP_protease

Protein Analysis

351

Amino Acids

38.91

Weight (kDa)

6.04

Isoelectric Point (pI)

36.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RGP PF03214 6 - 345 4.8e-184 Reversibly glycosylated polypeptide
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 671
Acc36I ACCTGC 2 cut(s) 240, 671
AccII CGCG 1 cut(s) 444
AciI CCGC 5 cut(s) 202, 444, 463, 480, 1004
AclWI GGATC 5 cut(s) 407, 965, 978, 1029, 1042
AcsI RAATTY 2 cut(s) 153, 556
AfaI GTAC 1 cut(s) 254
AfiI CCNNNNNNNGG 4 cut(s) 208, 318, 319, 614
AgsI TTSAA 3 cut(s) 79, 821, 829
AjnI CCWGG 1 cut(s) 756
AluBI AGCT 9 cut(s) 191, 656, 668, 825, 853, 958, 1018, 1041, 1052
AluI AGCT 9 cut(s) 191, 656, 668, 825, 853, 958, 1018, 1041, 1052
Alw26I GTCTC 2 cut(s) 82, 698
AlwI GGATC 5 cut(s) 407, 965, 978, 1029, 1042
AoxI GGCC 2 cut(s) 534, 650
ApeKI GCWGC 2 cut(s) 47, 604
ApoI RAATTY 2 cut(s) 153, 556
Asp700I GAANNNNTTC 1 cut(s) 71
AspS9I GGNCC 4 cut(s) 61, 535, 650, 868
AsuC2I CCSGG 2 cut(s) 59, 314
AsuHPI GGTGA 6 cut(s) 344, 695, 746, 821, 859, 1024
AvaII GGWCC 2 cut(s) 61, 868
BaeI ACNNNNGTAYC 2 cut(s) 244, 277
BamHI GGATCC 2 cut(s) 970, 1034
BauI CACGAG 2 cut(s) 244, 984
BbsI GAAGAC 2 cut(s) 207, 223
BbvI GCAGC 2 cut(s) 59, 591
BccI CCATC 3 cut(s) 23, 703, 850
BceAI ACGGC 1 cut(s) 800
BcgI CGANNNNNNTGC 2 cut(s) 238, 272
BciT130I CCWGG 1 cut(s) 758
BcnI CCSGG 2 cut(s) 59, 314
BcoDI GTCTC 2 cut(s) 82, 698
BfaI CTAG 1 cut(s) 318
BfuAI ACCTGC 2 cut(s) 240, 671
BisI GCNGC 2 cut(s) 48, 605
BlpI GCTNAGC 1 cut(s) 354
BlsI GCNGC 2 cut(s) 49, 606
Bme1390I CCNGG 3 cut(s) 59, 314, 758
Bme18I GGWCC 2 cut(s) 61, 868
BmgT120I GGNCC 4 cut(s) 61, 535, 650, 868
BmiI GGNNCC 3 cut(s) 870, 972, 1036
BmrFI CCNGG 3 cut(s) 59, 314, 758
BmsI GCATC 6 cut(s) 511, 562, 771, 802, 985, 998
BpiI GAAGAC 2 cut(s) 207, 223
BplI GAGNNNNNCTC 2 cut(s) 544, 576
BpmI CTGGAG 1 cut(s) 363
Bpu1102I GCTNAGC 1 cut(s) 354
BpuEI CTTGAG 1 cut(s) 524
BpuMI CCSGG 2 cut(s) 59, 314
BsaI GGTCTC 1 cut(s) 82
BsaJI CCNNGG 3 cut(s) 312, 757, 999
BsaXI ACNNNNNCTCC 2 cut(s) 132, 162
Bsc4I CCNNNNNNNGG 4 cut(s) 208, 318, 319, 614
Bse1I ACTGG 1 cut(s) 590
Bse3DI GCAATG 2 cut(s) 334, 624
BseBI CCWGG 1 cut(s) 758
BseDI CCNNGG 3 cut(s) 312, 757, 999
BseGI GGATG 3 cut(s) 577, 786, 1000
BseLI CCNNNNNNNGG 4 cut(s) 208, 318, 319, 614
BseMI GCAATG 2 cut(s) 334, 624
BseMII CTCAG 3 cut(s) 249, 368, 545
BseNI ACTGG 1 cut(s) 590
BseRI GAGGAG 1 cut(s) 968
BseXI GCAGC 2 cut(s) 59, 591
BseYI CCCAGC 2 cut(s) 664, 958
BsgI GTGCAG 2 cut(s) 268, 292
Bsh1236I CGCG 1 cut(s) 444
BshFI GGCC 2 cut(s) 536, 652
BsiSI CCGG 2 cut(s) 59, 314
BslFI GGGAC 2 cut(s) 335, 854
BslI CCNNNNNNNGG 4 cut(s) 208, 318, 319, 614
BsmAI GTCTC 2 cut(s) 82, 698
BsmBI CGTCTC 1 cut(s) 698
BsmFI GGGAC 2 cut(s) 335, 854
BsnI GGCC 2 cut(s) 536, 652
Bso31I GGTCTC 1 cut(s) 82
Bsp143I GATC 6 cut(s) 412, 634, 751, 899, 970, 1034
Bsp1720I GCTNAGC 1 cut(s) 354
Bsp19I CCATGG 1 cut(s) 999
BspACI CCGC 5 cut(s) 202, 444, 463, 480, 1004
BspANI GGCC 2 cut(s) 536, 652
BspCNI CTCAG 3 cut(s) 248, 367, 544
BspFNI CGCG 1 cut(s) 444
BspLI GGNNCC 3 cut(s) 870, 972, 1036
BspMI ACCTGC 2 cut(s) 240, 671
BspPI GGATC 5 cut(s) 407, 965, 978, 1029, 1042
BspTNI GGTCTC 1 cut(s) 82
BsrDI GCAATG 2 cut(s) 334, 624
BsrI ACTGG 1 cut(s) 590
BssECI CCNNGG 3 cut(s) 312, 757, 999
BssMI GATC 6 cut(s) 412, 634, 751, 899, 970, 1034
BssSI CACGAG 2 cut(s) 244, 984
BssT1I CCWWGG 1 cut(s) 999
Bst2BI CACGAG 2 cut(s) 244, 984
Bst2UI CCWGG 1 cut(s) 758
Bst4CI ACNGT 3 cut(s) 498, 586, 946
BstAPI GCANNNNNTGC 1 cut(s) 995
BstC8I GCNNGC 4 cut(s) 461, 482, 597, 654
BstDEI CTNAG 4 cut(s) 235, 354, 531, 1053
BstDSI CCRYGG 1 cut(s) 999
BstEII GGTNACC 1 cut(s) 446
BstF5I GGATG 3 cut(s) 577, 786, 1000
BstFNI CGCG 1 cut(s) 444
BstKTI GATC 6 cut(s) 415, 637, 754, 902, 973, 1037
BstMAI GTCTC 2 cut(s) 82, 698
BstMBI GATC 6 cut(s) 412, 634, 751, 899, 970, 1034
BstMWI GCNNNNNNNGC 4 cut(s) 601, 658, 911, 995
BstNI CCWGG 1 cut(s) 758
BstNSI RCATGY 1 cut(s) 480
BstPI GGTNACC 1 cut(s) 446
BstSCI CCNGG 3 cut(s) 57, 312, 756
BstUI CGCG 1 cut(s) 444
BstV1I GCAGC 2 cut(s) 59, 591
BstV2I GAAGAC 2 cut(s) 207, 223
BstX2I RGATCY 2 cut(s) 970, 1034
BstYI RGATCY 2 cut(s) 970, 1034
BsuRI GGCC 2 cut(s) 536, 652
BtgI CCRYGG 1 cut(s) 999
BtsCI GGATG 3 cut(s) 577, 786, 1000
BtsIMutI CAGTG 2 cut(s) 597, 951
BveI ACCTGC 2 cut(s) 240, 671
Cac8I GCNNGC 4 cut(s) 461, 482, 597, 654
Cfr13I GGNCC 4 cut(s) 61, 535, 650, 868
Csp6I GTAC 1 cut(s) 253
CspCI CAANNNNNGTGG 2 cut(s) 208, 243
CviAII CATG 2 cut(s) 477, 1000
CviQI GTAC 1 cut(s) 253
DdeI CTNAG 4 cut(s) 235, 354, 531, 1053
DpnI GATC 6 cut(s) 414, 636, 753, 901, 972, 1036
DpnII GATC 6 cut(s) 412, 634, 751, 899, 970, 1034
EciI GGCGGA 1 cut(s) 1019
Eco130I CCWWGG 1 cut(s) 999
Eco31I GGTCTC 1 cut(s) 82
Eco47I GGWCC 2 cut(s) 61, 868
Eco91I GGTNACC 1 cut(s) 446
EcoO109I RGGNCCY 1 cut(s) 535
EcoO65I GGTNACC 1 cut(s) 446
EcoRI GAATTC 1 cut(s) 556
EcoRII CCWGG 1 cut(s) 756
EcoT14I CCWWGG 1 cut(s) 999
ErhI CCWWGG 1 cut(s) 999
Esp3I CGTCTC 1 cut(s) 698
FaeI CATG 2 cut(s) 480, 1003
FaqI GGGAC 2 cut(s) 335, 854
FatI CATG 2 cut(s) 476, 999
FauI CCCGC 2 cut(s) 209, 473
Fnu4HI GCNGC 2 cut(s) 48, 605
FokI GGATG 3 cut(s) 584, 793, 1007
Fsp4HI GCNGC 2 cut(s) 48, 605
FspBI CTAG 1 cut(s) 318
GluI GCNGC 2 cut(s) 48, 605
GsaI CCCAGC 2 cut(s) 668, 962
GsuI CTGGAG 1 cut(s) 363
HaeIII GGCC 2 cut(s) 536, 652
HapII CCGG 2 cut(s) 59, 314
Hin1II CATG 2 cut(s) 480, 1003
HincII GTYRAC 1 cut(s) 34
HindII GTYRAC 1 cut(s) 34
HindIII AAGCTT 1 cut(s) 823
HinfI GANTC 1 cut(s) 618
HpaII CCGG 2 cut(s) 59, 314
HphI GGTGA 6 cut(s) 344, 695, 746, 821, 859, 1024
Hpy166II GTNNAC 2 cut(s) 34, 494
Hpy188I TCNGA 2 cut(s) 114, 994
Hpy188III TCNNGA 6 cut(s) 76, 158, 561, 638, 1021, 1047
Hpy8I GTNNAC 2 cut(s) 34, 494
HpyAV CCTTC 3 cut(s) 155, 680, 943
HpyCH4III ACNGT 3 cut(s) 498, 586, 946
HpyCH4V TGCA 6 cut(s) 47, 173, 249, 309, 524, 989
HpyF10VI GCNNNNNNNGC 4 cut(s) 601, 658, 911, 995
HpyF3I CTNAG 4 cut(s) 235, 354, 531, 1053
Hsp92II CATG 2 cut(s) 480, 1003
Kzo9I GATC 6 cut(s) 412, 634, 751, 899, 970, 1034
LmnI GCTCC 4 cut(s) 428, 666, 955, 1049
Lsp1109I GCAGC 2 cut(s) 59, 591
LweI GCATC 6 cut(s) 511, 562, 771, 802, 985, 998
MaeI CTAG 1 cut(s) 318
MaeIII GTNAC 4 cut(s) 239, 446, 472, 907
MalI GATC 6 cut(s) 414, 636, 753, 901, 972, 1036
MboI GATC 6 cut(s) 412, 634, 751, 899, 970, 1034
MboII GAAGA 5 cut(s) 207, 223, 725, 841, 929
MfeI CAATTG 1 cut(s) 294
MflI RGATCY 2 cut(s) 970, 1034
MluCI AATT 5 cut(s) 93, 153, 294, 505, 556
MmeI TCCRAC 1 cut(s) 1012
MroXI GAANNNNTTC 1 cut(s) 71
MseI TTAA 3 cut(s) 168, 372, 399
MspI CCGG 2 cut(s) 59, 314
MspR9I CCNGG 3 cut(s) 59, 314, 758
MunI CAATTG 1 cut(s) 294
MvaI CCWGG 1 cut(s) 758
MvnI CGCG 1 cut(s) 444
MwoI GCNNNNNNNGC 4 cut(s) 601, 658, 911, 995
NciI CCSGG 2 cut(s) 59, 314
NcoI CCATGG 1 cut(s) 999
NdeII GATC 6 cut(s) 412, 634, 751, 899, 970, 1034
NlaIII CATG 2 cut(s) 480, 1003
NlaIV GGNNCC 3 cut(s) 870, 972, 1036
NspI RCATGY 1 cut(s) 480
PaqCI CACCTGC 1 cut(s) 671
PdmI GAANNNNTTC 1 cut(s) 71
PfeI GAWTC 1 cut(s) 618
PkrI GCNGC 2 cut(s) 49, 606
Psp6I CCWGG 1 cut(s) 756
PspEI GGTNACC 1 cut(s) 446
PspFI CCCAGC 2 cut(s) 664, 958
PspGI CCWGG 1 cut(s) 756
PspN4I GGNNCC 3 cut(s) 870, 972, 1036
PspPI GGNCC 4 cut(s) 61, 535, 650, 868
PsrI GAACNNNNNNTAC 2 cut(s) 570, 602
PsuI RGATCY 2 cut(s) 970, 1034
RsaI GTAC 1 cut(s) 254
RsaNI GTAC 1 cut(s) 253
SaqAI TTAA 3 cut(s) 168, 372, 399
SatI GCNGC 2 cut(s) 48, 605
Sau3AI GATC 6 cut(s) 412, 634, 751, 899, 970, 1034
Sau96I GGNCC 4 cut(s) 61, 535, 650, 868
ScrFI CCNGG 3 cut(s) 59, 314, 758
SfaNI GCATC 6 cut(s) 511, 562, 771, 802, 985, 998
SinI GGWCC 2 cut(s) 61, 868
SmlI CTYRAG 1 cut(s) 539
SmoI CTYRAG 1 cut(s) 539
Sse9I AATT 5 cut(s) 93, 153, 294, 505, 556
SsiI CCGC 5 cut(s) 202, 444, 463, 480, 1004
SspMI CTAG 1 cut(s) 318
StyD4I CCNGG 3 cut(s) 57, 312, 756
StyI CCWWGG 1 cut(s) 999
TaaI ACNGT 3 cut(s) 498, 586, 946
TaqI TCGA 2 cut(s) 562, 898
TasI AATT 5 cut(s) 93, 153, 294, 505, 556
TfiI GAWTC 1 cut(s) 618
Tru1I TTAA 3 cut(s) 168, 372, 399
Tru9I TTAA 3 cut(s) 168, 372, 399
TscAI CASTG 2 cut(s) 597, 951
TseI GCWGC 2 cut(s) 47, 604
TspDTI ATGAA 3 cut(s) 96, 98, 152
TspGWI ACGGA 2 cut(s) 289, 410
TspRI CASTG 2 cut(s) 597, 951
VpaK11BI GGWCC 2 cut(s) 61, 868
XapI RAATTY 2 cut(s) 153, 556
XceI RCATGY 1 cut(s) 480
XmnI GAANNNNTTC 1 cut(s) 71
XspI CTAG 1 cut(s) 318
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.