pycom12g19910

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr12
OG0003540
Physical Location & Seq
Reverse (-)
21583542 .. 21584388
847 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom12g19910.1

Sequence Viewer

Length: 291 bp
ATGGCCTCCGAAGAGCCAAGGGACCCGTTCAAAGGGGTGGATTGGAAAGCTGTTGGCAATGACATGCAGAAGGACCCCGGTGTTAAACCGGGGATTAAGAAGCGGCTTCCCAGGAAGATTAGGCAGATTCCGGATTGCTATTTTCTTCCTCGAAGATCGCTACCCTATAACATTGCGTTTTTTGGAGCGTGCATTGCTGGTGGAATTGGTGCTGGCATGCTGTTGGAGGTCTGGATAAACAAGAAAGTTAGAGAGGATGGAGGCGTTGTATGGGAGTTCGACAAAAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

97

Amino Acids

10.85

Weight (kDa)

9.55

Isoelectric Point (pI)

41.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 130
AciI CCGC 1 cut(s) 103
AfiI CCNNNNNNNGG 1 cut(s) 32
AgsI TTSAA 1 cut(s) 31
AjnI CCWGG 1 cut(s) 110
AluBI AGCT 1 cut(s) 50
AluI AGCT 1 cut(s) 50
Aor13HI TCCGGA 1 cut(s) 130
AoxI GGCC 1 cut(s) 3
AspS9I GGNCC 2 cut(s) 22, 73
AsuC2I CCSGG 2 cut(s) 78, 90
AvaII GGWCC 2 cut(s) 22, 73
BccI CCATC 1 cut(s) 251
BciT130I CCWGG 1 cut(s) 112
BcnI CCSGG 2 cut(s) 78, 90
BisI GCNGC 1 cut(s) 104
BlsI GCNGC 1 cut(s) 105
Bme1390I CCNGG 3 cut(s) 78, 90, 112
Bme18I GGWCC 2 cut(s) 22, 73
BmgT120I GGNCC 2 cut(s) 22, 73
BmiI GGNNCC 3 cut(s) 23, 24, 75
BmrFI CCNGG 3 cut(s) 78, 90, 112
BpuMI CCSGG 2 cut(s) 78, 90
BsaJI CCNNGG 4 cut(s) 17, 76, 89, 110
BsaWI WCCGGW 1 cut(s) 130
BsaXI ACNNNNNCTCC 2 cut(s) 252, 282
Bsc4I CCNNNNNNNGG 1 cut(s) 32
Bse3DI GCAATG 3 cut(s) 64, 171, 192
BseAI TCCGGA 1 cut(s) 130
BseBI CCWGG 1 cut(s) 112
BseDI CCNNGG 4 cut(s) 17, 76, 89, 110
BseGI GGATG 1 cut(s) 262
BseLI CCNNNNNNNGG 1 cut(s) 32
BseMI GCAATG 3 cut(s) 64, 171, 192
BshFI GGCC 1 cut(s) 5
BsiSI CCGG 3 cut(s) 78, 89, 131
BslFI GGGAC 1 cut(s) 35
BslI CCNNNNNNNGG 1 cut(s) 32
BsmFI GGGAC 1 cut(s) 35
BsnI GGCC 1 cut(s) 5
Bsp13I TCCGGA 1 cut(s) 130
Bsp143I GATC 1 cut(s) 155
BspACI CCGC 1 cut(s) 103
BspANI GGCC 1 cut(s) 5
BspEI TCCGGA 1 cut(s) 130
BspLI GGNNCC 3 cut(s) 23, 24, 75
BspQI GCTCTTC 1 cut(s) 6
BsrDI GCAATG 3 cut(s) 64, 171, 192
BssECI CCNNGG 4 cut(s) 17, 76, 89, 110
BssMI GATC 1 cut(s) 155
BssT1I CCWWGG 1 cut(s) 17
Bst2UI CCWGG 1 cut(s) 112
Bst6I CTCTTC 1 cut(s) 6
BstC8I GCNNGC 3 cut(s) 190, 214, 218
BstF5I GGATG 1 cut(s) 262
BstKTI GATC 1 cut(s) 158
BstMBI GATC 1 cut(s) 155
BstMWI GCNNNNNNNGC 1 cut(s) 194
BstNI CCWGG 1 cut(s) 112
BstNSI RCATGY 2 cut(s) 67, 220
BstSCI CCNGG 3 cut(s) 76, 88, 110
BsuRI GGCC 1 cut(s) 5
BtsCI GGATG 1 cut(s) 262
Cac8I GCNNGC 3 cut(s) 190, 214, 218
Cfr13I GGNCC 2 cut(s) 22, 73
CviAII CATG 2 cut(s) 64, 217
CviJI RGCY 4 cut(s) 5, 16, 50, 106
CviKI_1 RGCY 4 cut(s) 5, 16, 50, 106
DpnI GATC 1 cut(s) 157
DpnII GATC 1 cut(s) 155
Eam1104I CTCTTC 1 cut(s) 6
EarI CTCTTC 1 cut(s) 6
Eco130I CCWWGG 1 cut(s) 17
Eco47I GGWCC 2 cut(s) 22, 73
EcoO109I RGGNCCY 2 cut(s) 22, 73
EcoRII CCWGG 1 cut(s) 110
EcoT14I CCWWGG 1 cut(s) 17
ErhI CCWWGG 1 cut(s) 17
FaeI CATG 2 cut(s) 67, 220
FaiI YATR 4 cut(s) 65, 168, 218, 271
FaqI GGGAC 1 cut(s) 35
FatI CATG 2 cut(s) 63, 216
Fnu4HI GCNGC 1 cut(s) 104
FokI GGATG 1 cut(s) 269
Fsp4HI GCNGC 1 cut(s) 104
GluI GCNGC 1 cut(s) 104
HaeIII GGCC 1 cut(s) 5
HapII CCGG 3 cut(s) 78, 89, 131
Hin1II CATG 2 cut(s) 67, 220
HinfI GANTC 1 cut(s) 127
HpaII CCGG 3 cut(s) 78, 89, 131
Hpy188I TCNGA 1 cut(s) 10
Hpy188III TCNNGA 2 cut(s) 131, 232
HpyAV CCTTC 1 cut(s) 64
HpyCH4V TGCA 2 cut(s) 67, 192
HpyF10VI GCNNNNNNNGC 1 cut(s) 194
Hsp92II CATG 2 cut(s) 67, 220
KflI GGGWCCC 1 cut(s) 22
Kpn2I TCCGGA 1 cut(s) 130
Kzo9I GATC 1 cut(s) 155
LguI GCTCTTC 1 cut(s) 6
LmnI GCTCC 1 cut(s) 185
LpnPI CCDG 8 cut(s) 91, 97, 102, 124, 144, 183, 198, 217
MalI GATC 1 cut(s) 157
MboI GATC 1 cut(s) 155
MboII GAAGA 4 cut(s) 23, 127, 137, 165
MluCI AATT 1 cut(s) 204
MmeI TCCRAC 1 cut(s) 204
MnlI CCTC 5 cut(s) 16, 159, 220, 247, 254
MroI TCCGGA 1 cut(s) 130
MseI TTAA 2 cut(s) 84, 96
MspI CCGG 3 cut(s) 78, 89, 131
MspR9I CCNGG 3 cut(s) 78, 90, 112
MvaI CCWGG 1 cut(s) 112
MwoI GCNNNNNNNGC 1 cut(s) 194
NciI CCSGG 2 cut(s) 78, 90
NdeII GATC 1 cut(s) 155
NlaIII CATG 2 cut(s) 67, 220
NlaIV GGNNCC 3 cut(s) 23, 24, 75
NspI RCATGY 2 cut(s) 67, 220
PaeI GCATGC 1 cut(s) 220
PciSI GCTCTTC 1 cut(s) 6
PfeI GAWTC 1 cut(s) 127
PkrI GCNGC 1 cut(s) 105
PpuMI RGGWCCY 2 cut(s) 22, 73
Psp5II RGGWCCY 2 cut(s) 22, 73
Psp6I CCWGG 1 cut(s) 110
PspGI CCWGG 1 cut(s) 110
PspN4I GGNNCC 3 cut(s) 23, 24, 75
PspPI GGNCC 2 cut(s) 22, 73
PspPPI RGGWCCY 2 cut(s) 22, 73
SapI GCTCTTC 1 cut(s) 6
SaqAI TTAA 2 cut(s) 84, 96
SatI GCNGC 1 cut(s) 104
Sau3AI GATC 1 cut(s) 155
Sau96I GGNCC 2 cut(s) 22, 73
ScrFI CCNGG 3 cut(s) 78, 90, 112
SetI ASST 2 cut(s) 52, 231
SinI GGWCC 2 cut(s) 22, 73
SphI GCATGC 1 cut(s) 220
Sse9I AATT 1 cut(s) 204
SsiI CCGC 1 cut(s) 103
StyD4I CCNGG 3 cut(s) 76, 88, 110
StyI CCWWGG 1 cut(s) 17
TaqI TCGA 2 cut(s) 151, 279
TasI AATT 1 cut(s) 204
TauI GCSGC 1 cut(s) 106
TfiI GAWTC 1 cut(s) 127
Tru1I TTAA 2 cut(s) 84, 96
Tru9I TTAA 2 cut(s) 84, 96
VpaK11BI GGWCC 2 cut(s) 22, 73
XceI RCATGY 2 cut(s) 67, 220
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.