AT5G16950

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0003540
Physical Location & Seq
Forward (+)
5572523 .. 5573191
669 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G16950.1

Sequence Viewer

Length: 300 bp
ATGGCAAGTGAGGGAGCAAAGGATCCATGGAAAGGAGAAGAGTGGGGAACTGAGAATGAGAAGACGAAGAAGCCAACAACAAGTGGTGTGAAAACGGTGACGAGAGCGAGGAAACAAATACCGAGGGGACTTGAAGACAAGTACGAAGCTTACTTCCTCCCGCGAAAGCCATGGCCAAGGGCTCTTGCCTACTATGGAAGTTTCATCCTTGGTGGGATCGGTGCTGGTATGGTTATTGAAGCTTGGATCAACAAAAAAGTCAAAGAAGATGGAGGAGTCATTTGGGAATTCGACAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

99

Amino Acids

11.19

Weight (kDa)

9.33

Isoelectric Point (pI)

21.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 163
AciI CCGC 1 cut(s) 161
AclWI GGATC 4 cut(s) 17, 30, 224, 254
AcoI YGGCCR 1 cut(s) 173
AcsI RAATTY 1 cut(s) 287
AfaI GTAC 1 cut(s) 143
AfiI CCNNNNNNNGG 1 cut(s) 32
AgsI TTSAA 2 cut(s) 134, 239
AluBI AGCT 2 cut(s) 149, 242
AluI AGCT 2 cut(s) 149, 242
AlwI GGATC 4 cut(s) 17, 30, 224, 254
AoxI GGCC 1 cut(s) 173
ApoI RAATTY 1 cut(s) 287
AsuHPI GGTGA 1 cut(s) 109
BalI TGGCCA 1 cut(s) 175
BamHI GGATCC 1 cut(s) 22
BanII GRGCYC 1 cut(s) 184
BbsI GAAGAC 2 cut(s) 68, 141
BccI CCATC 1 cut(s) 263
BmiI GGNNCC 1 cut(s) 24
BpiI GAAGAC 2 cut(s) 68, 141
BsaJI CCNNGG 5 cut(s) 26, 122, 170, 176, 208
Bsc4I CCNNNNNNNGG 1 cut(s) 32
BseDI CCNNGG 5 cut(s) 26, 122, 170, 176, 208
BseGI GGATG 1 cut(s) 204
BseLI CCNNNNNNNGG 1 cut(s) 32
BseMII CTCAG 1 cut(s) 42
BseRI GAGGAG 1 cut(s) 288
Bsh1236I CGCG 1 cut(s) 163
BshFI GGCC 1 cut(s) 175
BslFI GGGAC 1 cut(s) 141
BslI CCNNNNNNNGG 1 cut(s) 32
BsmFI GGGAC 1 cut(s) 141
BsnI GGCC 1 cut(s) 175
Bsp1286I GDGCHC 1 cut(s) 184
Bsp143I GATC 3 cut(s) 22, 216, 246
Bsp19I CCATGG 2 cut(s) 26, 170
BspACI CCGC 1 cut(s) 161
BspANI GGCC 1 cut(s) 175
BspCNI CTCAG 1 cut(s) 43
BspFNI CGCG 1 cut(s) 163
BspLI GGNNCC 1 cut(s) 24
BspPI GGATC 4 cut(s) 17, 30, 224, 254
BssECI CCNNGG 5 cut(s) 26, 122, 170, 176, 208
BssMI GATC 3 cut(s) 22, 216, 246
BssT1I CCWWGG 4 cut(s) 26, 170, 176, 208
Bst4CI ACNGT 1 cut(s) 97
Bst6I CTCTTC 1 cut(s) 33
BstDEI CTNAG 1 cut(s) 51
BstDSI CCRYGG 2 cut(s) 26, 170
BstF5I GGATG 1 cut(s) 204
BstFNI CGCG 1 cut(s) 163
BstKTI GATC 3 cut(s) 25, 219, 249
BstMBI GATC 3 cut(s) 22, 216, 246
BstUI CGCG 1 cut(s) 163
BstV2I GAAGAC 2 cut(s) 68, 141
BstX2I RGATCY 1 cut(s) 22
BstYI RGATCY 1 cut(s) 22
BsuRI GGCC 1 cut(s) 175
BtgI CCRYGG 2 cut(s) 26, 170
BtsCI GGATG 1 cut(s) 204
Csp6I GTAC 1 cut(s) 142
CviAII CATG 2 cut(s) 27, 171
CviJI RGCY 6 cut(s) 73, 149, 169, 175, 182, 242
CviKI_1 RGCY 6 cut(s) 73, 149, 169, 175, 182, 242
CviQI GTAC 1 cut(s) 142
DdeI CTNAG 1 cut(s) 51
DpnI GATC 3 cut(s) 24, 218, 248
DpnII GATC 3 cut(s) 22, 216, 246
EaeI YGGCCR 1 cut(s) 173
Eam1104I CTCTTC 1 cut(s) 33
EarI CTCTTC 1 cut(s) 33
Eco130I CCWWGG 4 cut(s) 26, 170, 176, 208
Eco24I GRGCYC 1 cut(s) 184
EcoRI GAATTC 1 cut(s) 287
EcoT14I CCWWGG 4 cut(s) 26, 170, 176, 208
EcoT38I GRGCYC 1 cut(s) 184
ErhI CCWWGG 4 cut(s) 26, 170, 176, 208
FaeI CATG 2 cut(s) 30, 174
FaiI YATR 4 cut(s) 28, 172, 195, 230
FaqI GGGAC 1 cut(s) 141
FatI CATG 2 cut(s) 26, 170
FauI CCCGC 1 cut(s) 168
FokI GGATG 1 cut(s) 191
FriOI GRGCYC 1 cut(s) 184
HaeIII GGCC 1 cut(s) 175
Hin1II CATG 2 cut(s) 30, 174
HindIII AAGCTT 2 cut(s) 147, 240
HinfI GANTC 1 cut(s) 276
HphI GGTGA 1 cut(s) 109
HpyCH4III ACNGT 1 cut(s) 97
HpyF3I CTNAG 1 cut(s) 51
Hsp92II CATG 2 cut(s) 30, 174
Kzo9I GATC 3 cut(s) 22, 216, 246
LmnI GCTCC 1 cut(s) 14
LpnPI CCDG 1 cut(s) 210
MaeIII GTNAC 1 cut(s) 97
MalI GATC 3 cut(s) 24, 218, 248
MboI GATC 3 cut(s) 22, 216, 246
MboII GAAGA 5 cut(s) 50, 73, 79, 146, 278
MflI RGATCY 1 cut(s) 22
MhlI GDGCHC 1 cut(s) 184
MlsI TGGCCA 1 cut(s) 175
MluCI AATT 1 cut(s) 287
MluNI TGGCCA 1 cut(s) 175
MlyI GAGTC 1 cut(s) 285
MnlI CCTC 5 cut(s) 4, 102, 117, 167, 266
Mox20I TGGCCA 1 cut(s) 175
MscI TGGCCA 1 cut(s) 175
Msp20I TGGCCA 1 cut(s) 175
MvnI CGCG 1 cut(s) 163
NcoI CCATGG 2 cut(s) 26, 170
NdeII GATC 3 cut(s) 22, 216, 246
NlaIII CATG 2 cut(s) 30, 174
NlaIV GGNNCC 1 cut(s) 24
NmuCI GTSAC 1 cut(s) 97
PleI GAGTC 1 cut(s) 284
PpsI GAGTC 1 cut(s) 284
PspN4I GGNNCC 1 cut(s) 24
PsuI RGATCY 1 cut(s) 22
RsaI GTAC 1 cut(s) 143
RsaNI GTAC 1 cut(s) 142
Sau3AI GATC 3 cut(s) 22, 216, 246
SchI GAGTC 1 cut(s) 285
SduI GDGCHC 1 cut(s) 184
SetI ASST 2 cut(s) 151, 244
Sse9I AATT 1 cut(s) 287
SsiI CCGC 1 cut(s) 161
StyI CCWWGG 4 cut(s) 26, 170, 176, 208
TaaI ACNGT 1 cut(s) 97
TaqI TCGA 1 cut(s) 291
TasI AATT 1 cut(s) 287
TseFI GTSAC 1 cut(s) 97
Tsp45I GTSAC 1 cut(s) 97
TspDTI ATGAA 1 cut(s) 193
XapI RAATTY 1 cut(s) 287
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.