Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0003540

Physical Location & Seq

Genomic Coordinates Reverse (-)

28715930 .. 28718153

Gene Structure 2224 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1200700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 291 bp

ATGGCCACCGAAGAGCCAAGAGACCCGTTCAAAGGGGTGGATTGGAAAGCTGTAGGCAATGACATGCAGAAGGACCCCGGTGTTAAACCAGGGATAAAGAAGCGGCTTCCCAGAAAGATTAGGCAGATTCCAGATTGCTATTTTCTTCCTCGAAGATCCCTACCCTACAACATTGCGTTTTTTGGAGCATGCATTGCTGGTGGAATTGGTGCTGGCATGCTTTTGGAGGTCTGGATAAACAAGAAAGTTAGAGAGGATGGAGGCGTCATATGGGAGTTCGACAAAAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

97

Amino Acids

10.88

Weight (kDa)

9.55

Isoelectric Point (pI)

41.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003540)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G16950
malus_domestica	MD04G1200700.v1.1 MD12G1213200.v1.1
prunus_persica	Prupe.6G320800_v2.0.a1 Prupe.6G320800_v2.0.a1 Prupe.6G320800_v2.0.a1
pyrus_communis	pycom12g19910
rosa_chinensis	RchiOBHm_Chr1g0322091 RchiOBHm_Chr1g0326231 RchiOBHm_Chr3g0455721
rosa_laevigata	RLG00000025336
rosa_roxburghii	Rroxscaffold_4G00323920 Rroxscaffold_4G00323930 Rroxscaffold_6G00423520 Rroxscaffold_6G00424020
rosa_rugosa	Rorug01G0057900 Rorug01G0058000.1 Rorug01G0058100 Rorug01G0058200 Rorug03G0009300 Rorug03G0009400 Rorug03G0009500
rosa_samantha	Rh1AG049400 Rh1AG074800 Rh1BG060300 Rh3AG041900 Rh3AG069100 Rh3BG071600 Rh3CG042100 Rh3CG069900 Rh3DG072300
rosa_wichuraiana	Rw1G004540 Rw1G025260 Rw3G005580 Rw3G005930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	103
AclWI	GGATC	1 cut(s)	150
AcoI	YGGCCR	1 cut(s)	3
AcyI	GRCGYC	1 cut(s)	264
AfiI	CCNNNNNNNGG	1 cut(s)	32
AgsI	TTSAA	1 cut(s)	31
AjnI	CCWGG	1 cut(s)	88
AluBI	AGCT	1 cut(s)	50
AluI	AGCT	1 cut(s)	50
Alw26I	GTCTC	1 cut(s)	15
AlwI	GGATC	1 cut(s)	150
AoxI	GGCC	1 cut(s)	3
AspS9I	GGNCC	1 cut(s)	73
AsuC2I	CCSGG	1 cut(s)	78
AvaII	GGWCC	1 cut(s)	73
BalI	TGGCCA	1 cut(s)	5
BccI	CCATC	1 cut(s)	251
BciT130I	CCWGG	1 cut(s)	90
BcnI	CCSGG	1 cut(s)	78
BcoDI	GTCTC	1 cut(s)	15
BfmI	CTRYAG	1 cut(s)	51
BisI	GCNGC	1 cut(s)	104
BlsI	GCNGC	1 cut(s)	105
Bme1390I	CCNGG	2 cut(s)	78, 90
Bme18I	GGWCC	1 cut(s)	73
BmgT120I	GGNCC	1 cut(s)	73
BmiI	GGNNCC	1 cut(s)	75
BmrFI	CCNGG	2 cut(s)	78, 90
BpuMI	CCSGG	1 cut(s)	78
BsaHI	GRCGYC	1 cut(s)	264
BsaI	GGTCTC	1 cut(s)	15
BsaJI	CCNNGG	2 cut(s)	76, 89
Bsc4I	CCNNNNNNNGG	1 cut(s)	32
Bse3DI	GCAATG	3 cut(s)	64, 171, 192
BseBI	CCWGG	1 cut(s)	90
BseDI	CCNNGG	2 cut(s)	76, 89
BseGI	GGATG	1 cut(s)	262
BseLI	CCNNNNNNNGG	1 cut(s)	32
BseMI	GCAATG	3 cut(s)	64, 171, 192
BshFI	GGCC	1 cut(s)	5
BsiSI	CCGG	1 cut(s)	78
BslI	CCNNNNNNNGG	1 cut(s)	32
BsmAI	GTCTC	1 cut(s)	15
BsnI	GGCC	1 cut(s)	5
Bso31I	GGTCTC	1 cut(s)	15
Bsp143I	GATC	1 cut(s)	155
BspACI	CCGC	1 cut(s)	103
BspANI	GGCC	1 cut(s)	5
BspLI	GGNNCC	1 cut(s)	75
BspPI	GGATC	1 cut(s)	150
BspQI	GCTCTTC	1 cut(s)	6
BspTNI	GGTCTC	1 cut(s)	15
BsrDI	GCAATG	3 cut(s)	64, 171, 192
BssECI	CCNNGG	2 cut(s)	76, 89
BssMI	GATC	1 cut(s)	155
BssNI	GRCGYC	1 cut(s)	264
Bst2UI	CCWGG	1 cut(s)	90
Bst6I	CTCTTC	1 cut(s)	6
BstACI	GRCGYC	1 cut(s)	264
BstAPI	GCANNNNNTGC	1 cut(s)	194
BstC8I	GCNNGC	3 cut(s)	190, 214, 218
BstF5I	GGATG	1 cut(s)	262
BstKTI	GATC	1 cut(s)	158
BstMAI	GTCTC	1 cut(s)	15
BstMBI	GATC	1 cut(s)	155
BstMWI	GCNNNNNNNGC	1 cut(s)	194
BstNI	CCWGG	1 cut(s)	90
BstNSI	RCATGY	3 cut(s)	67, 192, 220
BstSCI	CCNGG	2 cut(s)	76, 88
BstSFI	CTRYAG	1 cut(s)	51
BstX2I	RGATCY	1 cut(s)	155
BstYI	RGATCY	1 cut(s)	155
BsuRI	GGCC	1 cut(s)	5
BtsCI	GGATG	1 cut(s)	262
Cac8I	GCNNGC	3 cut(s)	190, 214, 218
Cfr13I	GGNCC	1 cut(s)	73
CseI	GACGC	1 cut(s)	253
CviAII	CATG	3 cut(s)	64, 189, 217
CviJI	RGCY	4 cut(s)	5, 16, 50, 106
CviKI_1	RGCY	4 cut(s)	5, 16, 50, 106
DpnI	GATC	1 cut(s)	157
DpnII	GATC	1 cut(s)	155
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	6
EarI	CTCTTC	1 cut(s)	6
Eco31I	GGTCTC	1 cut(s)	15
Eco47I	GGWCC	1 cut(s)	73
EcoO109I	RGGNCCY	1 cut(s)	73
EcoRII	CCWGG	1 cut(s)	88
EcoT22I	ATGCAT	1 cut(s)	194
FaeI	CATG	3 cut(s)	67, 192, 220
FaiI	YATR	5 cut(s)	65, 190, 218, 269, 271
FatI	CATG	3 cut(s)	63, 188, 216
FauNDI	CATATG	1 cut(s)	269
Fnu4HI	GCNGC	1 cut(s)	104
FokI	GGATG	1 cut(s)	269
Fsp4HI	GCNGC	1 cut(s)	104
GluI	GCNGC	1 cut(s)	104
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	1 cut(s)	78
HgaI	GACGC	1 cut(s)	253
Hin1I	GRCGYC	1 cut(s)	264
Hin1II	CATG	3 cut(s)	67, 192, 220
HinfI	GANTC	1 cut(s)	127
HpaII	CCGG	1 cut(s)	78
Hpy188III	TCNNGA	2 cut(s)	131, 232
HpyAV	CCTTC	1 cut(s)	64
HpyCH4V	TGCA	2 cut(s)	67, 192
HpyF10VI	GCNNNNNNNGC	1 cut(s)	194
Hsp92I	GRCGYC	1 cut(s)	264
Hsp92II	CATG	3 cut(s)	67, 192, 220
Kzo9I	GATC	1 cut(s)	155
LguI	GCTCTTC	1 cut(s)	6
LmnI	GCTCC	1 cut(s)	185
LpnPI	CCDG	8 cut(s)	75, 91, 102, 124, 144, 183, 198, 217
MalI	GATC	1 cut(s)	157
MboI	GATC	1 cut(s)	155
MboII	GAAGA	3 cut(s)	23, 137, 165
MflI	RGATCY	1 cut(s)	155
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	1 cut(s)	204
MluNI	TGGCCA	1 cut(s)	5
MnlI	CCTC	4 cut(s)	159, 220, 247, 254
Mox20I	TGGCCA	1 cut(s)	5
Mph1103I	ATGCAT	1 cut(s)	194
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	1 cut(s)	84
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	1 cut(s)	78
MspR9I	CCNGG	2 cut(s)	78, 90
MvaI	CCWGG	1 cut(s)	90
MwoI	GCNNNNNNNGC	1 cut(s)	194
NciI	CCSGG	1 cut(s)	78
NdeI	CATATG	1 cut(s)	269
NdeII	GATC	1 cut(s)	155
NlaIII	CATG	3 cut(s)	67, 192, 220
NlaIV	GGNNCC	1 cut(s)	75
NsiI	ATGCAT	1 cut(s)	194
NspI	RCATGY	3 cut(s)	67, 192, 220
PaeI	GCATGC	2 cut(s)	192, 220
PciSI	GCTCTTC	1 cut(s)	6
PfeI	GAWTC	1 cut(s)	127
PkrI	GCNGC	1 cut(s)	105
PpuMI	RGGWCCY	1 cut(s)	73
Psp5II	RGGWCCY	1 cut(s)	73
Psp6I	CCWGG	1 cut(s)	88
PspGI	CCWGG	1 cut(s)	88
PspN4I	GGNNCC	1 cut(s)	75
PspPI	GGNCC	1 cut(s)	73
PspPPI	RGGWCCY	1 cut(s)	73
PsuI	RGATCY	1 cut(s)	155
SapI	GCTCTTC	1 cut(s)	6
SaqAI	TTAA	1 cut(s)	84
SatI	GCNGC	1 cut(s)	104
Sau3AI	GATC	1 cut(s)	155
Sau96I	GGNCC	1 cut(s)	73
ScrFI	CCNGG	2 cut(s)	78, 90
SetI	ASST	2 cut(s)	52, 231
SfcI	CTRYAG	1 cut(s)	51
SinI	GGWCC	1 cut(s)	73
SphI	GCATGC	2 cut(s)	192, 220
Sse9I	AATT	1 cut(s)	204
SsiI	CCGC	1 cut(s)	103
StyD4I	CCNGG	2 cut(s)	76, 88
TaqI	TCGA	2 cut(s)	151, 279
TasI	AATT	1 cut(s)	204
TauI	GCSGC	1 cut(s)	106
TfiI	GAWTC	1 cut(s)	127
Tru1I	TTAA	1 cut(s)	84
Tru9I	TTAA	1 cut(s)	84
VpaK11BI	GGWCC	1 cut(s)	73
XceI	RCATGY	3 cut(s)	67, 192, 220
Zsp2I	ATGCAT	1 cut(s)	194

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.