Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0003540

Physical Location & Seq

Genomic Coordinates Reverse (-)

28381443 .. 28382911

Gene Structure 1469 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G320800.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 288 bp

ATGGCCATGGAAGAGCCAAAAGACCCGTTCAAAGGGGTTGATTGGAAAGCTGTTGGTAGTGACATGCAGAAGGACCCCAGTGTTAAGCCGGGCATAAAGAAGCGGCTTCCCAGAAAGATTAGGCAGATCCCAGATTGCTATTTTCTTCCTCGAAGATCCCTACCCTATAACATTGCATTCTTTGGAGCATGTATTGCTGGTGGCATTGGTGCTGGGATGCTGCTGGAGGTCTGGATAAACAAGAAAGTTAAAGATGATGGAGGAGTCATATGGGAGTTTGACAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

96

Amino Acids

10.71

Weight (kDa)

9.36

Isoelectric Point (pI)

41.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003540)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G16950
malus_domestica	MD04G1200700.v1.1 MD12G1213200.v1.1
prunus_persica	Prupe.6G320800_v2.0.a1 Prupe.6G320800_v2.0.a1 Prupe.6G320800_v2.0.a1
pyrus_communis	pycom12g19910
rosa_chinensis	RchiOBHm_Chr1g0322091 RchiOBHm_Chr1g0326231 RchiOBHm_Chr3g0455721
rosa_laevigata	RLG00000025336
rosa_roxburghii	Rroxscaffold_4G00323920 Rroxscaffold_4G00323930 Rroxscaffold_6G00423520 Rroxscaffold_6G00424020
rosa_rugosa	Rorug01G0057900 Rorug01G0058000.1 Rorug01G0058100 Rorug01G0058200 Rorug03G0009300 Rorug03G0009400 Rorug03G0009500
rosa_samantha	Rh1AG049400 Rh1AG074800 Rh1BG060300 Rh3AG041900 Rh3AG069100 Rh3BG071600 Rh3CG042100 Rh3CG069900 Rh3DG072300
rosa_wichuraiana	Rw1G004540 Rw1G025260 Rw3G005580 Rw3G005930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	103
AclWI	GGATC	2 cut(s)	121, 150
AcoI	YGGCCR	1 cut(s)	3
AfiI	CCNNNNNNNGG	1 cut(s)	32
AgsI	TTSAA	1 cut(s)	31
AluBI	AGCT	1 cut(s)	50
AluI	AGCT	1 cut(s)	50
AlwI	GGATC	2 cut(s)	121, 150
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	1 cut(s)	220
AspS9I	GGNCC	1 cut(s)	73
AsuC2I	CCSGG	1 cut(s)	90
AvaII	GGWCC	1 cut(s)	73
BalI	TGGCCA	1 cut(s)	5
BbvI	GCAGC	1 cut(s)	207
BccI	CCATC	1 cut(s)	251
BcnI	CCSGG	1 cut(s)	90
BisI	GCNGC	2 cut(s)	104, 221
BlsI	GCNGC	2 cut(s)	105, 222
Bme1390I	CCNGG	1 cut(s)	90
Bme18I	GGWCC	1 cut(s)	73
BmgT120I	GGNCC	1 cut(s)	73
BmiI	GGNNCC	1 cut(s)	75
BmrFI	CCNGG	1 cut(s)	90
BmrI	ACTGGG	1 cut(s)	72
BmsI	GCATC	1 cut(s)	207
BmuI	ACTGGG	1 cut(s)	72
BpmI	CTGGAG	1 cut(s)	245
BpuMI	CCSGG	1 cut(s)	90
BsaJI	CCNNGG	1 cut(s)	6
Bsc4I	CCNNNNNNNGG	1 cut(s)	32
Bse1I	ACTGG	1 cut(s)	78
Bse3DI	GCAATG	1 cut(s)	171
BseDI	CCNNGG	1 cut(s)	6
BseGI	GGATG	1 cut(s)	222
BseLI	CCNNNNNNNGG	1 cut(s)	32
BseMI	GCAATG	1 cut(s)	171
BseNI	ACTGG	1 cut(s)	78
BseRI	GAGGAG	1 cut(s)	276
BseXI	GCAGC	1 cut(s)	207
BseYI	CCCAGC	1 cut(s)	212
BshFI	GGCC	1 cut(s)	5
BsiSI	CCGG	1 cut(s)	89
BslI	CCNNNNNNNGG	1 cut(s)	32
BsmI	GAATGC	1 cut(s)	176
BsnI	GGCC	1 cut(s)	5
Bsp143I	GATC	2 cut(s)	126, 155
Bsp19I	CCATGG	1 cut(s)	6
BspACI	CCGC	1 cut(s)	103
BspANI	GGCC	1 cut(s)	5
BspLI	GGNNCC	1 cut(s)	75
BspPI	GGATC	2 cut(s)	121, 150
BspQI	GCTCTTC	1 cut(s)	6
BsrDI	GCAATG	1 cut(s)	171
BsrI	ACTGG	1 cut(s)	78
BssECI	CCNNGG	1 cut(s)	6
BssMI	GATC	2 cut(s)	126, 155
BssT1I	CCWWGG	1 cut(s)	6
Bst6I	CTCTTC	1 cut(s)	6
BstAPI	GCANNNNNTGC	1 cut(s)	194
BstDSI	CCRYGG	1 cut(s)	6
BstF5I	GGATG	1 cut(s)	222
BstKTI	GATC	2 cut(s)	129, 158
BstMBI	GATC	2 cut(s)	126, 155
BstMWI	GCNNNNNNNGC	1 cut(s)	194
BstNSI	RCATGY	2 cut(s)	67, 192
BstSCI	CCNGG	1 cut(s)	88
BstV1I	GCAGC	1 cut(s)	207
BstX2I	RGATCY	2 cut(s)	126, 155
BstYI	RGATCY	2 cut(s)	126, 155
BsuRI	GGCC	1 cut(s)	5
BtgI	CCRYGG	1 cut(s)	6
BtsCI	GGATG	1 cut(s)	222
BtsIMutI	CAGTG	1 cut(s)	85
Cfr13I	GGNCC	1 cut(s)	73
CviAII	CATG	3 cut(s)	7, 64, 189
CviJI	RGCY	5 cut(s)	5, 16, 50, 88, 106
CviKI_1	RGCY	5 cut(s)	5, 16, 50, 88, 106
DpnI	GATC	2 cut(s)	128, 157
DpnII	GATC	2 cut(s)	126, 155
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	6
EarI	CTCTTC	1 cut(s)	6
Eco130I	CCWWGG	1 cut(s)	6
Eco47I	GGWCC	1 cut(s)	73
EcoO109I	RGGNCCY	1 cut(s)	73
EcoT14I	CCWWGG	1 cut(s)	6
ErhI	CCWWGG	1 cut(s)	6
FaeI	CATG	3 cut(s)	10, 67, 192
FaiI	YATR	7 cut(s)	8, 65, 95, 168, 190, 269, 271
FatI	CATG	3 cut(s)	6, 63, 188
FauNDI	CATATG	1 cut(s)	269
Fnu4HI	GCNGC	2 cut(s)	104, 221
FokI	GGATG	1 cut(s)	229
Fsp4HI	GCNGC	2 cut(s)	104, 221
GluI	GCNGC	2 cut(s)	104, 221
GsaI	CCCAGC	1 cut(s)	216
GsuI	CTGGAG	1 cut(s)	245
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	1 cut(s)	89
Hin1II	CATG	3 cut(s)	10, 67, 192
HinfI	GANTC	1 cut(s)	264
HpaII	CCGG	1 cut(s)	89
Hpy188III	TCNNGA	1 cut(s)	232
HpyAV	CCTTC	1 cut(s)	64
HpyCH4V	TGCA	2 cut(s)	67, 176
HpyF10VI	GCNNNNNNNGC	1 cut(s)	194
Hsp92II	CATG	3 cut(s)	10, 67, 192
Kzo9I	GATC	2 cut(s)	126, 155
LguI	GCTCTTC	1 cut(s)	6
LmnI	GCTCC	1 cut(s)	185
LpnPI	CCDG	8 cut(s)	91, 102, 124, 144, 183, 198, 209, 217
Lsp1109I	GCAGC	1 cut(s)	207
LweI	GCATC	1 cut(s)	207
MaeIII	GTNAC	1 cut(s)	59
MalI	GATC	2 cut(s)	128, 157
MboI	GATC	2 cut(s)	126, 155
MboII	GAAGA	3 cut(s)	23, 137, 165
MflI	RGATCY	2 cut(s)	126, 155
MlsI	TGGCCA	1 cut(s)	5
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	273
MnlI	CCTC	3 cut(s)	159, 220, 254
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	2 cut(s)	84, 249
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	1 cut(s)	89
MspR9I	CCNGG	1 cut(s)	90
Mva1269I	GAATGC	1 cut(s)	176
MwoI	GCNNNNNNNGC	1 cut(s)	194
NciI	CCSGG	1 cut(s)	90
NcoI	CCATGG	1 cut(s)	6
NdeI	CATATG	1 cut(s)	269
NdeII	GATC	2 cut(s)	126, 155
NlaIII	CATG	3 cut(s)	10, 67, 192
NlaIV	GGNNCC	1 cut(s)	75
NmuCI	GTSAC	1 cut(s)	59
NspI	RCATGY	2 cut(s)	67, 192
PciSI	GCTCTTC	1 cut(s)	6
PctI	GAATGC	1 cut(s)	176
PkrI	GCNGC	2 cut(s)	105, 222
PleI	GAGTC	1 cut(s)	272
PpsI	GAGTC	1 cut(s)	272
PpuMI	RGGWCCY	1 cut(s)	73
Psp5II	RGGWCCY	1 cut(s)	73
PspFI	CCCAGC	1 cut(s)	212
PspN4I	GGNNCC	1 cut(s)	75
PspPI	GGNCC	1 cut(s)	73
PspPPI	RGGWCCY	1 cut(s)	73
PsuI	RGATCY	2 cut(s)	126, 155
SapI	GCTCTTC	1 cut(s)	6
SaqAI	TTAA	2 cut(s)	84, 249
SatI	GCNGC	2 cut(s)	104, 221
Sau3AI	GATC	2 cut(s)	126, 155
Sau96I	GGNCC	1 cut(s)	73
SchI	GAGTC	1 cut(s)	273
ScrFI	CCNGG	1 cut(s)	90
SetI	ASST	2 cut(s)	52, 231
SfaNI	GCATC	1 cut(s)	207
SinI	GGWCC	1 cut(s)	73
SsiI	CCGC	1 cut(s)	103
StyD4I	CCNGG	1 cut(s)	88
StyI	CCWWGG	1 cut(s)	6
TaqI	TCGA	1 cut(s)	151
TauI	GCSGC	1 cut(s)	106
Tru1I	TTAA	2 cut(s)	84, 249
Tru9I	TTAA	2 cut(s)	84, 249
TscAI	CASTG	1 cut(s)	85
TseFI	GTSAC	1 cut(s)	59
TseI	GCWGC	1 cut(s)	220
Tsp45I	GTSAC	1 cut(s)	59
TspRI	CASTG	1 cut(s)	85
VpaK11BI	GGWCC	1 cut(s)	73
XceI	RCATGY	2 cut(s)	67, 192

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.