Rh1AG049400

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
Physical Location & Seq
Reverse (-)
8325158 .. 8326004
847 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG049400.1

Sequence Viewer

Length: 288 bp
ATGGGCAGCGAGGAGCCAAGAGACCCGTTGCAAGGGGTCGATTGGAAAGCTGTTGGTAATGACATGCAGAGGAATCCCGGTTATAAACCAGAAATAAAGAAGCGGCTTCCTAAGAAGATTAGGCAGATTCCAGAGTGCTATTTTCTTCCTCGAAGATCCCGACTGTATAACTTAACATTTGTTGGAGCATGTATTGCTGGTGGAATTGGTGCAGGGATGTTGGTGGAGATGTGGATAAACAAGAAAGTTAGAGAGGATGGAGGCGTATTATGGGAGTTTGACAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

95

Amino Acids

10.89

Weight (kDa)

9.43

Isoelectric Point (pI)

56.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 84
AciI CCGC 1 cut(s) 103
AclWI GGATC 1 cut(s) 150
AfiI CCNNNNNNNGG 1 cut(s) 32
AluBI AGCT 1 cut(s) 50
AluI AGCT 1 cut(s) 50
Alw26I GTCTC 1 cut(s) 15
AlwI GGATC 1 cut(s) 150
ApeKI GCWGC 1 cut(s) 6
AsuC2I CCSGG 1 cut(s) 78
BbvI GCAGC 1 cut(s) 18
BccI CCATC 1 cut(s) 251
BcnI CCSGG 1 cut(s) 78
BcoDI GTCTC 1 cut(s) 15
BisI GCNGC 2 cut(s) 7, 104
BlsI GCNGC 2 cut(s) 8, 105
Bme1390I CCNGG 1 cut(s) 78
BmiI GGNNCC 1 cut(s) 15
BmrFI CCNGG 1 cut(s) 78
BpuMI CCSGG 1 cut(s) 78
BsaI GGTCTC 1 cut(s) 15
Bsc4I CCNNNNNNNGG 1 cut(s) 32
BseGI GGATG 2 cut(s) 222, 262
BseLI CCNNNNNNNGG 1 cut(s) 32
BseRI GAGGAG 1 cut(s) 26
BseXI GCAGC 1 cut(s) 18
BsgI GTGCAG 1 cut(s) 231
BsiSI CCGG 1 cut(s) 78
BslI CCNNNNNNNGG 1 cut(s) 32
BsmAI GTCTC 1 cut(s) 15
Bso31I GGTCTC 1 cut(s) 15
Bsp143I GATC 1 cut(s) 155
BspACI CCGC 1 cut(s) 103
BspLI GGNNCC 1 cut(s) 15
BspPI GGATC 1 cut(s) 150
BspTNI GGTCTC 1 cut(s) 15
BssMI GATC 1 cut(s) 155
Bst4CI ACNGT 1 cut(s) 165
BstAPI GCANNNNNTGC 1 cut(s) 194
BstDEI CTNAG 1 cut(s) 111
BstF5I GGATG 2 cut(s) 222, 262
BstKTI GATC 1 cut(s) 158
BstMAI GTCTC 1 cut(s) 15
BstMBI GATC 1 cut(s) 155
BstMWI GCNNNNNNNGC 1 cut(s) 194
BstNSI RCATGY 2 cut(s) 67, 192
BstSCI CCNGG 1 cut(s) 76
BstV1I GCAGC 1 cut(s) 18
BstX2I RGATCY 1 cut(s) 155
BstYI RGATCY 1 cut(s) 155
BtsCI GGATG 2 cut(s) 222, 262
CviAII CATG 2 cut(s) 64, 189
CviJI RGCY 3 cut(s) 16, 50, 106
CviKI_1 RGCY 3 cut(s) 16, 50, 106
DdeI CTNAG 1 cut(s) 111
DpnI GATC 1 cut(s) 157
DpnII GATC 1 cut(s) 155
Eco31I GGTCTC 1 cut(s) 15
FaeI CATG 2 cut(s) 67, 192
FaiI YATR 5 cut(s) 65, 84, 168, 190, 271
FatI CATG 2 cut(s) 63, 188
Fnu4HI GCNGC 2 cut(s) 7, 104
FokI GGATG 2 cut(s) 229, 269
Fsp4HI GCNGC 2 cut(s) 7, 104
GluI GCNGC 2 cut(s) 7, 104
HapII CCGG 1 cut(s) 78
Hin1II CATG 2 cut(s) 67, 192
HinfI GANTC 2 cut(s) 73, 127
HpaII CCGG 1 cut(s) 78
Hpy188III TCNNGA 2 cut(s) 131, 159
HpyCH4III ACNGT 1 cut(s) 165
HpyCH4V TGCA 3 cut(s) 31, 67, 212
HpyF10VI GCNNNNNNNGC 1 cut(s) 194
HpyF3I CTNAG 1 cut(s) 111
Hsp92II CATG 2 cut(s) 67, 192
Kzo9I GATC 1 cut(s) 155
LmnI GCTCC 2 cut(s) 13, 185
LpnPI CCDG 5 cut(s) 91, 102, 144, 183, 198
Lsp1109I GCAGC 1 cut(s) 18
MalI GATC 1 cut(s) 157
MboI GATC 1 cut(s) 155
MboII GAAGA 3 cut(s) 127, 137, 165
MflI RGATCY 1 cut(s) 155
MluCI AATT 1 cut(s) 204
MmeI TCCRAC 1 cut(s) 163
MnlI CCTC 5 cut(s) 4, 63, 159, 247, 254
MseI TTAA 1 cut(s) 173
MspI CCGG 1 cut(s) 78
MspR9I CCNGG 1 cut(s) 78
MwoI GCNNNNNNNGC 1 cut(s) 194
NciI CCSGG 1 cut(s) 78
NdeII GATC 1 cut(s) 155
NlaIII CATG 2 cut(s) 67, 192
NlaIV GGNNCC 1 cut(s) 15
NspI RCATGY 2 cut(s) 67, 192
PcsI WCGNNNNNNNCGW 1 cut(s) 157
PfeI GAWTC 2 cut(s) 73, 127
PkrI GCNGC 2 cut(s) 8, 105
PsiI TTATAA 1 cut(s) 84
PspN4I GGNNCC 1 cut(s) 15
PsuI RGATCY 1 cut(s) 155
SaqAI TTAA 1 cut(s) 173
SatI GCNGC 2 cut(s) 7, 104
Sau3AI GATC 1 cut(s) 155
ScrFI CCNGG 1 cut(s) 78
SetI ASST 1 cut(s) 52
Sse9I AATT 1 cut(s) 204
SsiI CCGC 1 cut(s) 103
StyD4I CCNGG 1 cut(s) 76
TaaI ACNGT 1 cut(s) 165
TaqI TCGA 2 cut(s) 39, 151
TasI AATT 1 cut(s) 204
TauI GCSGC 1 cut(s) 106
TfiI GAWTC 2 cut(s) 73, 127
Tru1I TTAA 1 cut(s) 173
Tru9I TTAA 1 cut(s) 173
TseI GCWGC 1 cut(s) 6
XceI RCATGY 2 cut(s) 67, 192
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.