Rh1BG060300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0003540
Physical Location & Seq
Reverse (-)
8796616 .. 8799566
2951 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG060300.1

Sequence Viewer

Length: 429 bp
ATGGTCACCGAAGAGCCTAAAGACCCGTTGAGACGGGTGAACTGGAAAGCTGTTGGTAGTGATATGCAGAAGAGCCCCTGTGGTAAACCAGGCATAATGAAACGACTTCCCAGAAAGATTAGTCTGAATCCAGATTGCTATTTTCTTCCTCCAAAGTTACTACCCTACAACATTGCACCCTTAGAAGCATGTGGCCTTCTAAACACTTCTGGATCAGATGTAACCACATGGATTGAGGGGAAGCACACACTTGGAAGGGTGTTCAGCATGCATGTATACCAGAGTGTTTGGAAGGAGAGAAACAATAGAGTATGGGAAATTTCATCTCTGAGAGCTGGTGATGCTGTGTTTACGGTAAATGCAAGACTCGCAGAGTATCAATTTTATCATAAAAAGCAATCTGGTAATAGAAGAAGCACGGTCAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

142

Amino Acids

16.24

Weight (kDa)

9.87

Isoelectric Point (pI)

58.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 276
AclWI GGATC 1 cut(s) 220
AcsI RAATTY 1 cut(s) 318
AjnI CCWGG 1 cut(s) 88
AluBI AGCT 2 cut(s) 50, 335
AluI AGCT 2 cut(s) 50, 335
Alw26I GTCTC 1 cut(s) 25
AlwI GGATC 1 cut(s) 220
AoxI GGCC 1 cut(s) 193
ApoI RAATTY 1 cut(s) 318
AsuHPI GGTGA 2 cut(s) 49, 350
BanII GRGCYC 1 cut(s) 77
BciT130I CCWGG 1 cut(s) 90
BcoDI GTCTC 1 cut(s) 25
Bme1390I CCNGG 1 cut(s) 90
BmrFI CCNGG 1 cut(s) 90
BmsI GCATC 1 cut(s) 331
Bse1I ACTGG 1 cut(s) 47
Bse3DI GCAATG 1 cut(s) 171
BseBI CCWGG 1 cut(s) 90
BseMI GCAATG 1 cut(s) 171
BseMII CTCAG 1 cut(s) 320
BseNI ACTGG 1 cut(s) 47
BshFI GGCC 1 cut(s) 195
BsmAI GTCTC 1 cut(s) 25
BsmBI CGTCTC 1 cut(s) 25
BsnI GGCC 1 cut(s) 195
Bsp1286I GDGCHC 1 cut(s) 77
Bsp143I GATC 1 cut(s) 212
BspANI GGCC 1 cut(s) 195
BspCNI CTCAG 1 cut(s) 321
BspPI GGATC 1 cut(s) 220
BspQI GCTCTTC 2 cut(s) 6, 65
BsrDI GCAATG 1 cut(s) 171
BsrI ACTGG 1 cut(s) 47
BssMI GATC 1 cut(s) 212
BssNAI GTATAC 1 cut(s) 277
Bst1107I GTATAC 1 cut(s) 277
Bst2UI CCWGG 1 cut(s) 90
Bst4CI ACNGT 2 cut(s) 355, 421
Bst6I CTCTTC 2 cut(s) 6, 65
BstC8I GCNNGC 1 cut(s) 269
BstDEI CTNAG 2 cut(s) 181, 329
BstEII GGTNACC 1 cut(s) 4
BstKTI GATC 1 cut(s) 215
BstMAI GTCTC 1 cut(s) 25
BstMBI GATC 1 cut(s) 212
BstMWI GCNNNNNNNGC 2 cut(s) 341, 368
BstNI CCWGG 1 cut(s) 90
BstNSI RCATGY 3 cut(s) 192, 271, 275
BstPI GGTNACC 1 cut(s) 4
BstSCI CCNGG 1 cut(s) 88
BstZ17I GTATAC 1 cut(s) 277
BsuRI GGCC 1 cut(s) 195
Cac8I GCNNGC 1 cut(s) 269
CspCI CAANNNNNGTGG 2 cut(s) 214, 249
CviAII CATG 4 cut(s) 189, 228, 268, 272
CviJI RGCY 5 cut(s) 16, 50, 75, 195, 335
CviKI_1 RGCY 5 cut(s) 16, 50, 75, 195, 335
DdeI CTNAG 2 cut(s) 181, 329
DpnI GATC 1 cut(s) 214
DpnII GATC 1 cut(s) 212
Eam1104I CTCTTC 2 cut(s) 6, 65
EarI CTCTTC 2 cut(s) 6, 65
Eco24I GRGCYC 1 cut(s) 77
Eco91I GGTNACC 1 cut(s) 4
EcoO65I GGTNACC 1 cut(s) 4
EcoRII CCWGG 1 cut(s) 88
EcoT22I ATGCAT 1 cut(s) 273
EcoT38I GRGCYC 1 cut(s) 77
Esp3I CGTCTC 1 cut(s) 25
FaeI CATG 4 cut(s) 192, 231, 271, 275
FaiI YATR 9 cut(s) 65, 95, 190, 229, 269, 273, 277, 313, 390
FatI CATG 4 cut(s) 188, 227, 267, 271
FblI GTMKAC 1 cut(s) 276
FriOI GRGCYC 1 cut(s) 77
HaeIII GGCC 1 cut(s) 195
Hin1II CATG 4 cut(s) 192, 231, 271, 275
HinfI GANTC 2 cut(s) 127, 366
HphI GGTGA 2 cut(s) 49, 350
Hpy166II GTNNAC 4 cut(s) 40, 86, 277, 351
Hpy188I TCNGA 3 cut(s) 126, 217, 330
Hpy188III TCNNGA 2 cut(s) 131, 210
Hpy8I GTNNAC 4 cut(s) 40, 86, 277, 351
HpyAV CCTTC 3 cut(s) 206, 249, 286
HpyCH4III ACNGT 2 cut(s) 355, 421
HpyCH4V TGCA 4 cut(s) 67, 176, 271, 362
HpyF10VI GCNNNNNNNGC 2 cut(s) 341, 368
HpyF3I CTNAG 2 cut(s) 181, 329
Hsp92II CATG 4 cut(s) 192, 231, 271, 275
Kzo9I GATC 1 cut(s) 212
LguI GCTCTTC 2 cut(s) 6, 65
LweI GCATC 1 cut(s) 331
MaeIII GTNAC 3 cut(s) 4, 156, 220
MalI GATC 1 cut(s) 214
MboI GATC 1 cut(s) 212
MboII GAAGA 4 cut(s) 23, 82, 137, 423
MhlI GDGCHC 1 cut(s) 77
MluCI AATT 2 cut(s) 318, 380
MlyI GAGTC 1 cut(s) 360
MnlI CCTC 2 cut(s) 159, 229
Mph1103I ATGCAT 1 cut(s) 273
MspR9I CCNGG 1 cut(s) 90
MvaI CCWGG 1 cut(s) 90
MwoI GCNNNNNNNGC 2 cut(s) 341, 368
NdeII GATC 1 cut(s) 212
NlaIII CATG 4 cut(s) 192, 231, 271, 275
NmuCI GTSAC 1 cut(s) 4
NsiI ATGCAT 1 cut(s) 273
NspI RCATGY 3 cut(s) 192, 271, 275
PaeI GCATGC 1 cut(s) 271
PciSI GCTCTTC 2 cut(s) 6, 65
PfeI GAWTC 1 cut(s) 127
PleI GAGTC 1 cut(s) 360
PpsI GAGTC 1 cut(s) 360
Psp6I CCWGG 1 cut(s) 88
PspEI GGTNACC 1 cut(s) 4
PspGI CCWGG 1 cut(s) 88
SapI GCTCTTC 2 cut(s) 6, 65
Sau3AI GATC 1 cut(s) 212
SchI GAGTC 1 cut(s) 360
ScrFI CCNGG 1 cut(s) 90
SduI GDGCHC 1 cut(s) 77
SetI ASST 2 cut(s) 52, 337
SfaNI GCATC 1 cut(s) 331
SphI GCATGC 1 cut(s) 271
Sse9I AATT 2 cut(s) 318, 380
StyD4I CCNGG 1 cut(s) 88
TaaI ACNGT 2 cut(s) 355, 421
TasI AATT 2 cut(s) 318, 380
TfiI GAWTC 1 cut(s) 127
TseFI GTSAC 1 cut(s) 4
Tsp45I GTSAC 1 cut(s) 4
TspDTI ATGAA 2 cut(s) 113, 312
XapI RAATTY 1 cut(s) 318
XceI RCATGY 3 cut(s) 192, 271, 275
XmiI GTMKAC 1 cut(s) 276
Zsp2I ATGCAT 1 cut(s) 273
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.