Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0003540

Physical Location & Seq

Genomic Coordinates Forward (+)

2831815 .. 2833556

Gene Structure 1742 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG041900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

ATGGAAAATGCTTTAGAACCCACATTTCGGCCAGTTATCCGATTGCGGAGGGACCCTTGTGATATGTTATGGGTAAGAGTGGATTGGGAAGTTAACAGAACATTTTGGTGTGTCATGGGCACTGAAGAAACAAATGACCCTTTCAAAGGGGTAGCTTGGAAAGCTGTTGGTAGTGATATGCAGAAGAACCCTGGTGATAAACCGTGTATGAAGAAGCGGCTTCCCAAAATGATCGGGCAGATTCCAGAATGCTATTTTCTTCCTTGTAGATCCCTGCTCTATAATATTACCTTTTCTGGAGCATATATTGCTGGTGGAATTGGTGAGGGAATGCTGGAGGAGATGTGGATCAACAAGAAAGAGAGGATGGAGGCATACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

126

Amino Acids

14.67

Weight (kDa)

7.56

Isoelectric Point (pI)

47.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003540)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G16950
malus_domestica	MD04G1200700.v1.1 MD12G1213200.v1.1
prunus_persica	Prupe.6G320800_v2.0.a1 Prupe.6G320800_v2.0.a1 Prupe.6G320800_v2.0.a1
pyrus_communis	pycom12g19910
rosa_chinensis	RchiOBHm_Chr1g0322091 RchiOBHm_Chr1g0326231 RchiOBHm_Chr3g0455721
rosa_laevigata	RLG00000025336
rosa_roxburghii	Rroxscaffold_4G00323920 Rroxscaffold_4G00323930 Rroxscaffold_6G00423520 Rroxscaffold_6G00424020
rosa_rugosa	Rorug01G0057900 Rorug01G0058000.1 Rorug01G0058100 Rorug01G0058200 Rorug03G0009300 Rorug03G0009400 Rorug03G0009500
rosa_samantha	Rh1AG049400 Rh1AG074800 Rh1BG060300 Rh3AG041900 Rh3AG069100 Rh3BG071600 Rh3CG042100 Rh3CG069900 Rh3DG072300
rosa_wichuraiana	Rw1G004540 Rw1G025260 Rw3G005580 Rw3G005930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	46, 217
AclWI	GGATC	2 cut(s)	264, 356
AcoI	YGGCCR	1 cut(s)	29
AcuI	CTGAAG	1 cut(s)	144
AfiI	CCNNNNNNNGG	2 cut(s)	27, 146
AgsI	TTSAA	1 cut(s)	145
AjnI	CCWGG	1 cut(s)	190
AluBI	AGCT	2 cut(s)	155, 164
AluI	AGCT	2 cut(s)	155, 164
AlwI	GGATC	2 cut(s)	264, 356
AoxI	GGCC	1 cut(s)	29
AspS9I	GGNCC	1 cut(s)	52
AsuHPI	GGTGA	2 cut(s)	206, 335
AvaII	GGWCC	1 cut(s)	52
BaeGI	GKGCMC	1 cut(s)	122
BccI	CCATC	1 cut(s)	361
BciT130I	CCWGG	1 cut(s)	192
BfaI	CTAG	1 cut(s)	379
BisI	GCNGC	1 cut(s)	218
BlsI	GCNGC	1 cut(s)	219
Bme1390I	CCNGG	1 cut(s)	192
Bme18I	GGWCC	1 cut(s)	52
BmgT120I	GGNCC	1 cut(s)	52
BmiI	GGNNCC	2 cut(s)	53, 54
BmrFI	CCNGG	1 cut(s)	192
BpmI	CTGGAG	2 cut(s)	318, 356
BsaBI	GATNNNNATC	1 cut(s)	347
BsaJI	CCNNGG	1 cut(s)	190
BsaXI	ACNNNNNCTCC	2 cut(s)	329, 359
Bsc4I	CCNNNNNNNGG	2 cut(s)	27, 146
Bse1I	ACTGG	1 cut(s)	32
Bse8I	GATNNNNATC	1 cut(s)	347
BseBI	CCWGG	1 cut(s)	192
BseDI	CCNNGG	1 cut(s)	190
BseGI	GGATG	1 cut(s)	372
BseJI	GATNNNNATC	1 cut(s)	347
BseLI	CCNNNNNNNGG	2 cut(s)	27, 146
BseNI	ACTGG	1 cut(s)	32
BseRI	GAGGAG	1 cut(s)	353
BseSI	GKGCMC	1 cut(s)	122
BshFI	GGCC	1 cut(s)	31
BslFI	GGGAC	1 cut(s)	65
BslI	CCNNNNNNNGG	2 cut(s)	27, 146
BsmFI	GGGAC	1 cut(s)	65
BsmI	GAATGC	2 cut(s)	254, 336
BsnI	GGCC	1 cut(s)	31
Bsp1286I	GDGCHC	1 cut(s)	122
Bsp143I	GATC	3 cut(s)	231, 269, 348
BspACI	CCGC	2 cut(s)	46, 217
BspANI	GGCC	1 cut(s)	31
BspLI	GGNNCC	2 cut(s)	53, 54
BspPI	GGATC	2 cut(s)	264, 356
BsrI	ACTGG	1 cut(s)	32
BssECI	CCNNGG	1 cut(s)	190
BssMI	GATC	3 cut(s)	231, 269, 348
Bst2UI	CCWGG	1 cut(s)	192
Bst4CI	ACNGT	1 cut(s)	204
BstAPI	GCANNNNNTGC	1 cut(s)	308
BstENI	CCTNNNNNAGG	1 cut(s)	144
BstF5I	GGATG	1 cut(s)	372
BstKTI	GATC	3 cut(s)	234, 272, 351
BstMBI	GATC	3 cut(s)	231, 269, 348
BstMWI	GCNNNNNNNGC	2 cut(s)	161, 308
BstNI	CCWGG	1 cut(s)	192
BstSCI	CCNGG	1 cut(s)	190
BstSLI	GKGCMC	1 cut(s)	122
BstX2I	RGATCY	1 cut(s)	269
BstYI	RGATCY	1 cut(s)	269
BsuRI	GGCC	1 cut(s)	31
BtsCI	GGATG	1 cut(s)	372
BtsIMutI	CAGTG	1 cut(s)	120
Cfr13I	GGNCC	1 cut(s)	52
CviAII	CATG	1 cut(s)	115
CviJI	RGCY	4 cut(s)	31, 155, 164, 220
CviKI_1	RGCY	4 cut(s)	31, 155, 164, 220
DpnI	GATC	3 cut(s)	233, 271, 350
DpnII	GATC	3 cut(s)	231, 269, 348
EaeI	YGGCCR	1 cut(s)	29
Eco47I	GGWCC	1 cut(s)	52
Eco57I	CTGAAG	1 cut(s)	144
EcoNI	CCTNNNNNAGG	1 cut(s)	144
EcoO109I	RGGNCCY	1 cut(s)	52
EcoRII	CCWGG	1 cut(s)	190
FaeI	CATG	1 cut(s)	118
FaiI	YATR	9 cut(s)	65, 70, 116, 179, 209, 282, 304, 306, 376
FaqI	GGGAC	1 cut(s)	65
FatI	CATG	1 cut(s)	114
Fnu4HI	GCNGC	1 cut(s)	218
Fsp4HI	GCNGC	1 cut(s)	218
FspBI	CTAG	1 cut(s)	379
GluI	GCNGC	1 cut(s)	218
GsuI	CTGGAG	2 cut(s)	318, 356
HaeIII	GGCC	1 cut(s)	31
Hin1II	CATG	1 cut(s)	118
HincII	GTYRAC	1 cut(s)	94
HindII	GTYRAC	1 cut(s)	94
HinfI	GANTC	1 cut(s)	241
HpaI	GTTAAC	1 cut(s)	94
HphI	GGTGA	2 cut(s)	206, 335
Hpy166II	GTNNAC	1 cut(s)	94
Hpy188I	TCNGA	1 cut(s)	41
Hpy188III	TCNNGA	2 cut(s)	245, 297
Hpy8I	GTNNAC	1 cut(s)	94
HpyCH4III	ACNGT	1 cut(s)	204
HpyCH4V	TGCA	1 cut(s)	181
HpyF10VI	GCNNNNNNNGC	2 cut(s)	161, 308
Hsp92II	CATG	1 cut(s)	118
KflI	GGGWCCC	1 cut(s)	52
KspAI	GTTAAC	1 cut(s)	94
Kzo9I	GATC	3 cut(s)	231, 269, 348
LmnI	GCTCC	1 cut(s)	299
LpnPI	CCDG	8 cut(s)	45, 177, 204, 258, 282, 287, 297, 320
MaeI	CTAG	1 cut(s)	379
MalI	GATC	3 cut(s)	233, 271, 350
MboI	GATC	3 cut(s)	231, 269, 348
MboII	GAAGA	4 cut(s)	137, 196, 223, 251
MflI	RGATCY	1 cut(s)	269
MhlI	GDGCHC	1 cut(s)	122
MluCI	AATT	1 cut(s)	318
MnlI	CCTC	5 cut(s)	42, 319, 331, 357, 364
MseI	TTAA	1 cut(s)	93
MslI	CAYNNNNRTG	1 cut(s)	106
MspR9I	CCNGG	1 cut(s)	192
Mva1269I	GAATGC	2 cut(s)	254, 336
MvaI	CCWGG	1 cut(s)	192
MwoI	GCNNNNNNNGC	2 cut(s)	161, 308
NdeII	GATC	3 cut(s)	231, 269, 348
NlaIII	CATG	1 cut(s)	118
NlaIV	GGNNCC	2 cut(s)	53, 54
PctI	GAATGC	2 cut(s)	254, 336
PfeI	GAWTC	1 cut(s)	241
PkrI	GCNGC	1 cut(s)	219
PpuMI	RGGWCCY	1 cut(s)	52
Psp5II	RGGWCCY	1 cut(s)	52
Psp6I	CCWGG	1 cut(s)	190
PspGI	CCWGG	1 cut(s)	190
PspN4I	GGNNCC	2 cut(s)	53, 54
PspPI	GGNCC	1 cut(s)	52
PspPPI	RGGWCCY	1 cut(s)	52
PsuI	RGATCY	1 cut(s)	269
RseI	CAYNNNNRTG	1 cut(s)	106
SaqAI	TTAA	1 cut(s)	93
SatI	GCNGC	1 cut(s)	218
Sau3AI	GATC	3 cut(s)	231, 269, 348
Sau96I	GGNCC	1 cut(s)	52
ScrFI	CCNGG	1 cut(s)	192
SduI	GDGCHC	1 cut(s)	122
SetI	ASST	3 cut(s)	157, 166, 293
SinI	GGWCC	1 cut(s)	52
SmiMI	CAYNNNNRTG	1 cut(s)	106
Sse9I	AATT	1 cut(s)	318
SsiI	CCGC	2 cut(s)	46, 217
SspI	AATATT	1 cut(s)	286
SspMI	CTAG	1 cut(s)	379
StyD4I	CCNGG	1 cut(s)	190
TaaI	ACNGT	1 cut(s)	204
TasI	AATT	1 cut(s)	318
TauI	GCSGC	1 cut(s)	220
TfiI	GAWTC	1 cut(s)	241
Tru1I	TTAA	1 cut(s)	93
Tru9I	TTAA	1 cut(s)	93
TscAI	CASTG	1 cut(s)	127
TspDTI	ATGAA	1 cut(s)	224
TspRI	CASTG	1 cut(s)	127
VpaK11BI	GGWCC	1 cut(s)	52
XagI	CCTNNNNNAGG	1 cut(s)	144
XspI	CTAG	1 cut(s)	379

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.