Rroxscaffold_6G00423520

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0003540
Physical Location & Seq
Reverse (-)
44632331 .. 44635083
2753 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00423520.1

Sequence Viewer

Length: 396 bp
ATGGGCAGCGAGGAGCCAAGAGACCCGTTGCAAGGGGTCGATTGGAAAGCTGTTGGTAATGACATGCAGAGGAACCCCGGTGATAAACCAGGGATAAAAAAGCGGCTTCCCAAGAAGATTAGGCAGATTCCAGAGTGCTATTTTCTTCCTCGAAGATCTCGACTCTATAACTTCACATTTGTTGGAGCATGTATTGCTGGTGGAATTGGTGCAGGGATGCTGGTGGAGATGTGGATAAACAAGAAAGTTAGAGGGGGATGTGAAAGTATGCATTTGCTTTTGTATTTGATGAGAGATGGTTTCTTAACAAAAGATGAATCTCTTTTGACCACTGAAAGCAGTAGGATGGAGGCGTATTATGGGAGTTTGACAAATAAAGACCAGATAGAGCTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

131

Amino Acids

14.88

Weight (kDa)

9.03

Isoelectric Point (pI)

51.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 103
AfiI CCNNNNNNNGG 1 cut(s) 32
AjnI CCWGG 1 cut(s) 88
AluBI AGCT 2 cut(s) 50, 391
AluI AGCT 2 cut(s) 50, 391
Alw26I GTCTC 1 cut(s) 15
ApeKI GCWGC 1 cut(s) 6
AsuC2I CCSGG 1 cut(s) 78
AsuHPI GGTGA 1 cut(s) 92
BbvI GCAGC 1 cut(s) 18
BccI CCATC 2 cut(s) 290, 340
BciT130I CCWGG 1 cut(s) 90
BcnI CCSGG 1 cut(s) 78
BcoDI GTCTC 1 cut(s) 15
BglII AGATCT 1 cut(s) 155
BisI GCNGC 2 cut(s) 7, 104
BlsI GCNGC 2 cut(s) 8, 105
Bme1390I CCNGG 2 cut(s) 78, 90
BmiI GGNNCC 2 cut(s) 15, 74
BmrFI CCNGG 2 cut(s) 78, 90
BmsI GCATC 1 cut(s) 207
BpuMI CCSGG 1 cut(s) 78
BsaI GGTCTC 1 cut(s) 15
BsaJI CCNNGG 2 cut(s) 76, 89
Bsc4I CCNNNNNNNGG 1 cut(s) 32
BseBI CCWGG 1 cut(s) 90
BseDI CCNNGG 2 cut(s) 76, 89
BseGI GGATG 3 cut(s) 222, 263, 351
BseLI CCNNNNNNNGG 1 cut(s) 32
BseRI GAGGAG 1 cut(s) 26
BseXI GCAGC 1 cut(s) 18
BsgI GTGCAG 1 cut(s) 231
BsiSI CCGG 1 cut(s) 78
BslI CCNNNNNNNGG 1 cut(s) 32
BsmAI GTCTC 1 cut(s) 15
Bso31I GGTCTC 1 cut(s) 15
Bsp143I GATC 1 cut(s) 155
BspACI CCGC 1 cut(s) 103
BspLI GGNNCC 2 cut(s) 15, 74
BspTNI GGTCTC 1 cut(s) 15
BssECI CCNNGG 2 cut(s) 76, 89
BssMI GATC 1 cut(s) 155
Bst2UI CCWGG 1 cut(s) 90
BstAPI GCANNNNNTGC 1 cut(s) 194
BstF5I GGATG 3 cut(s) 222, 263, 351
BstKTI GATC 1 cut(s) 158
BstMAI GTCTC 1 cut(s) 15
BstMBI GATC 1 cut(s) 155
BstMWI GCNNNNNNNGC 1 cut(s) 194
BstNI CCWGG 1 cut(s) 90
BstNSI RCATGY 2 cut(s) 67, 192
BstSCI CCNGG 2 cut(s) 76, 88
BstV1I GCAGC 1 cut(s) 18
BstX2I RGATCY 1 cut(s) 155
BstYI RGATCY 1 cut(s) 155
BtsCI GGATG 3 cut(s) 222, 263, 351
BtsIMutI CAGTG 1 cut(s) 330
CviAII CATG 2 cut(s) 64, 189
CviJI RGCY 4 cut(s) 16, 50, 106, 391
CviKI_1 RGCY 4 cut(s) 16, 50, 106, 391
DpnI GATC 1 cut(s) 157
DpnII GATC 1 cut(s) 155
Eco31I GGTCTC 1 cut(s) 15
EcoRII CCWGG 1 cut(s) 88
EcoT22I ATGCAT 1 cut(s) 273
FaeI CATG 2 cut(s) 67, 192
FaiI YATR 5 cut(s) 65, 168, 190, 269, 360
FatI CATG 2 cut(s) 63, 188
Fnu4HI GCNGC 2 cut(s) 7, 104
FokI GGATG 3 cut(s) 229, 270, 358
Fsp4HI GCNGC 2 cut(s) 7, 104
GluI GCNGC 2 cut(s) 7, 104
HapII CCGG 1 cut(s) 78
Hin1II CATG 2 cut(s) 67, 192
HinfI GANTC 3 cut(s) 127, 162, 317
HpaII CCGG 1 cut(s) 78
HphI GGTGA 1 cut(s) 92
Hpy188III TCNNGA 2 cut(s) 131, 159
HpyCH4V TGCA 4 cut(s) 31, 67, 212, 271
HpyF10VI GCNNNNNNNGC 1 cut(s) 194
Hsp92II CATG 2 cut(s) 67, 192
Kzo9I GATC 1 cut(s) 155
LmnI GCTCC 2 cut(s) 13, 185
LpnPI CCDG 7 cut(s) 75, 91, 102, 144, 183, 198, 206
Lsp1109I GCAGC 1 cut(s) 18
LweI GCATC 1 cut(s) 207
MalI GATC 1 cut(s) 157
MboI GATC 1 cut(s) 155
MboII GAAGA 3 cut(s) 127, 137, 165
MflI RGATCY 1 cut(s) 155
MluCI AATT 1 cut(s) 204
MlyI GAGTC 1 cut(s) 156
MmeI TCCRAC 1 cut(s) 163
MnlI CCTC 5 cut(s) 4, 63, 159, 245, 343
Mph1103I ATGCAT 1 cut(s) 273
MseI TTAA 1 cut(s) 305
MspI CCGG 1 cut(s) 78
MspR9I CCNGG 2 cut(s) 78, 90
MvaI CCWGG 1 cut(s) 90
MwoI GCNNNNNNNGC 1 cut(s) 194
NciI CCSGG 1 cut(s) 78
NdeII GATC 1 cut(s) 155
NlaIII CATG 2 cut(s) 67, 192
NlaIV GGNNCC 2 cut(s) 15, 74
NsiI ATGCAT 1 cut(s) 273
NspI RCATGY 2 cut(s) 67, 192
PcsI WCGNNNNNNNCGW 1 cut(s) 157
PfeI GAWTC 2 cut(s) 127, 317
PkrI GCNGC 2 cut(s) 8, 105
PleI GAGTC 1 cut(s) 156
PpsI GAGTC 1 cut(s) 156
Psp6I CCWGG 1 cut(s) 88
PspGI CCWGG 1 cut(s) 88
PspN4I GGNNCC 2 cut(s) 15, 74
PsuI RGATCY 1 cut(s) 155
SaqAI TTAA 1 cut(s) 305
SatI GCNGC 2 cut(s) 7, 104
Sau3AI GATC 1 cut(s) 155
SchI GAGTC 1 cut(s) 156
ScrFI CCNGG 2 cut(s) 78, 90
SetI ASST 2 cut(s) 52, 393
SfaNI GCATC 1 cut(s) 207
Sse9I AATT 1 cut(s) 204
SsiI CCGC 1 cut(s) 103
StyD4I CCNGG 2 cut(s) 76, 88
TaqI TCGA 3 cut(s) 39, 151, 160
TasI AATT 1 cut(s) 204
TauI GCSGC 1 cut(s) 106
TfiI GAWTC 2 cut(s) 127, 317
Tru1I TTAA 1 cut(s) 305
Tru9I TTAA 1 cut(s) 305
TscAI CASTG 1 cut(s) 337
TseI GCWGC 1 cut(s) 6
TspDTI ATGAA 1 cut(s) 330
TspRI CASTG 1 cut(s) 337
XceI RCATGY 2 cut(s) 67, 192
Zsp2I ATGCAT 1 cut(s) 273
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.