Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0003540

Physical Location & Seq

Genomic Coordinates Forward (+)

5295759 .. 5296621

Gene Structure 863 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G005930.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 288 bp

ATGGGCAGCGAGGAGCCAAGAGACCCATTGCAAGGGGTCGATTGGAAAGCTGTTGGTAATGACATGCAGAGGAATCCCGGTGATAAACCAGGAATAAAGAAGCGGCTTCCCAAGAAGATTAGGCAGATTCCAGAGTGCTATTTTCTTCCTCGAAGATCCCGATTGTATAACTTTACATTTGTTGGAGCATGTATTGCTGGTGGAATTGGCGCAGGGATGCTGGTGGAGATGTGGATAAACAAGAAAGTTAGAGAGGATGGAGGCGTATTATGGGAGTTTGACAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

95

Amino Acids

10.81

Weight (kDa)

9.47

Isoelectric Point (pI)

49.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003540)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G16950
malus_domestica	MD04G1200700.v1.1 MD12G1213200.v1.1
prunus_persica	Prupe.6G320800_v2.0.a1 Prupe.6G320800_v2.0.a1 Prupe.6G320800_v2.0.a1
pyrus_communis	pycom12g19910
rosa_chinensis	RchiOBHm_Chr1g0322091 RchiOBHm_Chr1g0326231 RchiOBHm_Chr3g0455721
rosa_laevigata	RLG00000025336
rosa_roxburghii	Rroxscaffold_4G00323920 Rroxscaffold_4G00323930 Rroxscaffold_6G00423520 Rroxscaffold_6G00424020
rosa_rugosa	Rorug01G0057900 Rorug01G0058000.1 Rorug01G0058100 Rorug01G0058200 Rorug03G0009300 Rorug03G0009400 Rorug03G0009500
rosa_samantha	Rh1AG049400 Rh1AG074800 Rh1BG060300 Rh3AG041900 Rh3AG069100 Rh3BG071600 Rh3CG042100 Rh3CG069900 Rh3DG072300
rosa_wichuraiana	Rw1G004540 Rw1G025260 Rw3G005580 Rw3G005930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	103
AclWI	GGATC	1 cut(s)	150
AfiI	CCNNNNNNNGG	1 cut(s)	32
AjnI	CCWGG	1 cut(s)	88
AluBI	AGCT	1 cut(s)	50
AluI	AGCT	1 cut(s)	50
Alw26I	GTCTC	1 cut(s)	15
AlwI	GGATC	1 cut(s)	150
ApeKI	GCWGC	1 cut(s)	6
AspLEI	GCGC	1 cut(s)	212
AsuC2I	CCSGG	1 cut(s)	78
AsuHPI	GGTGA	1 cut(s)	92
BbvI	GCAGC	1 cut(s)	18
BccI	CCATC	1 cut(s)	251
BciT130I	CCWGG	1 cut(s)	90
BcnI	CCSGG	1 cut(s)	78
BcoDI	GTCTC	1 cut(s)	15
BisI	GCNGC	2 cut(s)	7, 104
BlsI	GCNGC	2 cut(s)	8, 105
Bme1390I	CCNGG	2 cut(s)	78, 90
BmiI	GGNNCC	1 cut(s)	15
BmrFI	CCNGG	2 cut(s)	78, 90
BmsI	GCATC	1 cut(s)	207
BpuMI	CCSGG	1 cut(s)	78
BsaI	GGTCTC	1 cut(s)	15
Bsc4I	CCNNNNNNNGG	1 cut(s)	32
Bse3DI	GCAATG	1 cut(s)	26
BseBI	CCWGG	1 cut(s)	90
BseGI	GGATG	2 cut(s)	222, 262
BseLI	CCNNNNNNNGG	1 cut(s)	32
BseMI	GCAATG	1 cut(s)	26
BseRI	GAGGAG	1 cut(s)	26
BseXI	GCAGC	1 cut(s)	18
BsiSI	CCGG	1 cut(s)	78
BslI	CCNNNNNNNGG	1 cut(s)	32
BsmAI	GTCTC	1 cut(s)	15
Bso31I	GGTCTC	1 cut(s)	15
Bsp143I	GATC	1 cut(s)	155
BspACI	CCGC	1 cut(s)	103
BspLI	GGNNCC	1 cut(s)	15
BspPI	GGATC	1 cut(s)	150
BspTNI	GGTCTC	1 cut(s)	15
BsrDI	GCAATG	1 cut(s)	26
BssMI	GATC	1 cut(s)	155
Bst2UI	CCWGG	1 cut(s)	90
BstAPI	GCANNNNNTGC	1 cut(s)	194
BstF5I	GGATG	2 cut(s)	222, 262
BstHHI	GCGC	1 cut(s)	212
BstKTI	GATC	1 cut(s)	158
BstMAI	GTCTC	1 cut(s)	15
BstMBI	GATC	1 cut(s)	155
BstMWI	GCNNNNNNNGC	1 cut(s)	194
BstNI	CCWGG	1 cut(s)	90
BstNSI	RCATGY	2 cut(s)	67, 192
BstSCI	CCNGG	2 cut(s)	76, 88
BstV1I	GCAGC	1 cut(s)	18
BstX2I	RGATCY	1 cut(s)	155
BstYI	RGATCY	1 cut(s)	155
BtsCI	GGATG	2 cut(s)	222, 262
CfoI	GCGC	1 cut(s)	212
CviAII	CATG	2 cut(s)	64, 189
CviJI	RGCY	3 cut(s)	16, 50, 106
CviKI_1	RGCY	3 cut(s)	16, 50, 106
DpnI	GATC	1 cut(s)	157
DpnII	GATC	1 cut(s)	155
Eco31I	GGTCTC	1 cut(s)	15
EcoRII	CCWGG	1 cut(s)	88
FaeI	CATG	2 cut(s)	67, 192
FaiI	YATR	4 cut(s)	65, 168, 190, 271
FatI	CATG	2 cut(s)	63, 188
Fnu4HI	GCNGC	2 cut(s)	7, 104
FokI	GGATG	2 cut(s)	229, 269
Fsp4HI	GCNGC	2 cut(s)	7, 104
GlaI	GCGC	1 cut(s)	211
GluI	GCNGC	2 cut(s)	7, 104
HapII	CCGG	1 cut(s)	78
HhaI	GCGC	1 cut(s)	212
Hin1II	CATG	2 cut(s)	67, 192
Hin6I	GCGC	1 cut(s)	210
HinP1I	GCGC	1 cut(s)	210
HinfI	GANTC	2 cut(s)	73, 127
HpaII	CCGG	1 cut(s)	78
HphI	GGTGA	1 cut(s)	92
Hpy188III	TCNNGA	2 cut(s)	131, 159
HpyCH4V	TGCA	2 cut(s)	31, 67
HpyF10VI	GCNNNNNNNGC	1 cut(s)	194
Hsp92II	CATG	2 cut(s)	67, 192
HspAI	GCGC	1 cut(s)	210
Kzo9I	GATC	1 cut(s)	155
LmnI	GCTCC	2 cut(s)	13, 185
LpnPI	CCDG	7 cut(s)	75, 91, 102, 144, 183, 198, 206
Lsp1109I	GCAGC	1 cut(s)	18
LweI	GCATC	1 cut(s)	207
MalI	GATC	1 cut(s)	157
MboI	GATC	1 cut(s)	155
MboII	GAAGA	3 cut(s)	127, 137, 165
MflI	RGATCY	1 cut(s)	155
MluCI	AATT	1 cut(s)	204
MmeI	TCCRAC	1 cut(s)	163
MnlI	CCTC	5 cut(s)	4, 63, 159, 247, 254
MspI	CCGG	1 cut(s)	78
MspR9I	CCNGG	2 cut(s)	78, 90
MvaI	CCWGG	1 cut(s)	90
MwoI	GCNNNNNNNGC	1 cut(s)	194
NciI	CCSGG	1 cut(s)	78
NdeII	GATC	1 cut(s)	155
NlaIII	CATG	2 cut(s)	67, 192
NlaIV	GGNNCC	1 cut(s)	15
NspI	RCATGY	2 cut(s)	67, 192
PcsI	WCGNNNNNNNCGW	1 cut(s)	157
PfeI	GAWTC	2 cut(s)	73, 127
PkrI	GCNGC	2 cut(s)	8, 105
Psp6I	CCWGG	1 cut(s)	88
PspGI	CCWGG	1 cut(s)	88
PspN4I	GGNNCC	1 cut(s)	15
PsuI	RGATCY	1 cut(s)	155
SatI	GCNGC	2 cut(s)	7, 104
Sau3AI	GATC	1 cut(s)	155
ScrFI	CCNGG	2 cut(s)	78, 90
SetI	ASST	1 cut(s)	52
SfaNI	GCATC	1 cut(s)	207
Sse9I	AATT	1 cut(s)	204
SsiI	CCGC	1 cut(s)	103
StyD4I	CCNGG	2 cut(s)	76, 88
TaqI	TCGA	2 cut(s)	39, 151
TasI	AATT	1 cut(s)	204
TauI	GCSGC	1 cut(s)	106
TfiI	GAWTC	2 cut(s)	73, 127
TseI	GCWGC	1 cut(s)	6
XceI	RCATGY	2 cut(s)	67, 192

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.