Rh1AG074800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0003540
Physical Location & Seq
Reverse (-)
12349457 .. 12352415
2959 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG074800.1

Sequence Viewer

Length: 429 bp
ATGGTCACCGAAGAGCCTAAAGACCTGTTGAGACGGGTGAACTGGAAAGCTGTTGGTAGTGATATGCAGAAGAGGCCCTATGGTAAACCAGGCATAATGAAACGACTTCCCAGAAAGATTAGTCTGAATCCAGATTGCTATTTTCTTCCTCCTAAGTTACTACCCTACAACATTGCATCCTTAGAAGCATGTGGCCTTCTAAACACTGCTGGATCAGATGTAAGACTCACATGGATTGAGGGGAAGCACACACTTGGAAGGGTGTTCAGCATGCATGTATACCAGAGTGTTTGGAAGGAGAGAAACAATAGAGTATGGGAAATTTCATCTCTGACAGCTGGTGATGCTGTGTTTACAGTAAATGCAAGACTCGCAGAATATCAATTTTATCATAAAAAGCAATCTGATAATAGAAGCACGTTCAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

142

Amino Acids

16.42

Weight (kDa)

9.82

Isoelectric Point (pI)

53.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 279
AclWI GGATC 1 cut(s) 220
AcsI RAATTY 1 cut(s) 321
AgsI TTSAA 1 cut(s) 424
AjnI CCWGG 1 cut(s) 88
AluBI AGCT 2 cut(s) 50, 338
AluI AGCT 2 cut(s) 50, 338
Alw26I GTCTC 1 cut(s) 25
AlwI GGATC 1 cut(s) 220
AoxI GGCC 2 cut(s) 74, 193
ApoI RAATTY 1 cut(s) 321
AspS9I GGNCC 1 cut(s) 75
AsuHPI GGTGA 2 cut(s) 49, 353
BciT130I CCWGG 1 cut(s) 90
BcoDI GTCTC 1 cut(s) 25
Bme1390I CCNGG 1 cut(s) 90
BmgT120I GGNCC 1 cut(s) 75
BmrFI CCNGG 1 cut(s) 90
BmsI GCATC 2 cut(s) 185, 334
Bse1I ACTGG 1 cut(s) 47
Bse3DI GCAATG 1 cut(s) 171
BseBI CCWGG 1 cut(s) 90
BseGI GGATG 1 cut(s) 176
BseMI GCAATG 1 cut(s) 171
BseNI ACTGG 1 cut(s) 47
BshFI GGCC 2 cut(s) 76, 195
BsmAI GTCTC 1 cut(s) 25
BsmBI CGTCTC 1 cut(s) 25
BsnI GGCC 2 cut(s) 76, 195
Bsp143I GATC 1 cut(s) 212
BspANI GGCC 2 cut(s) 76, 195
BspPI GGATC 1 cut(s) 220
BspQI GCTCTTC 1 cut(s) 6
BsrDI GCAATG 1 cut(s) 171
BsrI ACTGG 1 cut(s) 47
BssMI GATC 1 cut(s) 212
BssNAI GTATAC 1 cut(s) 280
Bst1107I GTATAC 1 cut(s) 280
Bst2UI CCWGG 1 cut(s) 90
Bst4CI ACNGT 1 cut(s) 358
Bst6I CTCTTC 2 cut(s) 6, 65
BstC8I GCNNGC 1 cut(s) 272
BstDEI CTNAG 2 cut(s) 153, 181
BstEII GGTNACC 1 cut(s) 4
BstF5I GGATG 1 cut(s) 176
BstKTI GATC 1 cut(s) 215
BstMAI GTCTC 1 cut(s) 25
BstMBI GATC 1 cut(s) 212
BstMWI GCNNNNNNNGC 3 cut(s) 73, 344, 371
BstNI CCWGG 1 cut(s) 90
BstNSI RCATGY 3 cut(s) 192, 274, 278
BstPI GGTNACC 1 cut(s) 4
BstSCI CCNGG 1 cut(s) 88
BstZ17I GTATAC 1 cut(s) 280
BsuRI GGCC 2 cut(s) 76, 195
BtsCI GGATG 1 cut(s) 176
BtsI GCAGTG 1 cut(s) 204
BtsIMutI CAGTG 1 cut(s) 204
Cac8I GCNNGC 1 cut(s) 272
Cfr13I GGNCC 1 cut(s) 75
CviAII CATG 4 cut(s) 189, 231, 271, 275
CviJI RGCY 5 cut(s) 16, 50, 76, 195, 338
CviKI_1 RGCY 5 cut(s) 16, 50, 76, 195, 338
DdeI CTNAG 2 cut(s) 153, 181
DpnI GATC 1 cut(s) 214
DpnII GATC 1 cut(s) 212
Eam1104I CTCTTC 2 cut(s) 6, 65
EarI CTCTTC 2 cut(s) 6, 65
Eco91I GGTNACC 1 cut(s) 4
EcoO109I RGGNCCY 1 cut(s) 75
EcoO65I GGTNACC 1 cut(s) 4
EcoRII CCWGG 1 cut(s) 88
EcoT22I ATGCAT 1 cut(s) 276
Esp3I CGTCTC 1 cut(s) 25
FaeI CATG 4 cut(s) 192, 234, 274, 278
FatI CATG 4 cut(s) 188, 230, 270, 274
FblI GTMKAC 1 cut(s) 279
FokI GGATG 1 cut(s) 163
HaeIII GGCC 2 cut(s) 76, 195
Hin1II CATG 4 cut(s) 192, 234, 274, 278
HinfI GANTC 3 cut(s) 127, 225, 369
HphI GGTGA 2 cut(s) 49, 353
Hpy166II GTNNAC 4 cut(s) 40, 86, 280, 354
Hpy188I TCNGA 4 cut(s) 126, 217, 333, 406
Hpy188III TCNNGA 1 cut(s) 131
Hpy8I GTNNAC 4 cut(s) 40, 86, 280, 354
HpyAV CCTTC 3 cut(s) 206, 252, 289
HpyCH4III ACNGT 1 cut(s) 358
HpyCH4IV ACGT 1 cut(s) 419
HpyCH4V TGCA 4 cut(s) 67, 176, 274, 365
HpyF10VI GCNNNNNNNGC 3 cut(s) 73, 344, 371
HpyF3I CTNAG 2 cut(s) 153, 181
HpySE526I ACGT 1 cut(s) 419
Hsp92II CATG 4 cut(s) 192, 234, 274, 278
Kzo9I GATC 1 cut(s) 212
LguI GCTCTTC 1 cut(s) 6
LpnPI CCDG 9 cut(s) 28, 38, 75, 102, 124, 144, 195, 296, 324
LweI GCATC 2 cut(s) 185, 334
MaeII ACGT 1 cut(s) 419
MaeIII GTNAC 2 cut(s) 4, 156
MalI GATC 1 cut(s) 214
MboI GATC 1 cut(s) 212
MboII GAAGA 3 cut(s) 23, 82, 137
MluCI AATT 2 cut(s) 321, 383
MlyI GAGTC 2 cut(s) 219, 363
MnlI CCTC 3 cut(s) 66, 159, 232
Mph1103I ATGCAT 1 cut(s) 276
MspA1I CMGCKG 1 cut(s) 338
MspR9I CCNGG 1 cut(s) 90
MvaI CCWGG 1 cut(s) 90
MwoI GCNNNNNNNGC 3 cut(s) 73, 344, 371
NdeII GATC 1 cut(s) 212
NlaIII CATG 4 cut(s) 192, 234, 274, 278
NmuCI GTSAC 1 cut(s) 4
NsiI ATGCAT 1 cut(s) 276
NspI RCATGY 3 cut(s) 192, 274, 278
PaeI GCATGC 1 cut(s) 274
PciSI GCTCTTC 1 cut(s) 6
PfeI GAWTC 1 cut(s) 127
PleI GAGTC 2 cut(s) 219, 363
PpsI GAGTC 2 cut(s) 219, 363
Psp6I CCWGG 1 cut(s) 88
PspEI GGTNACC 1 cut(s) 4
PspGI CCWGG 1 cut(s) 88
PspPI GGNCC 1 cut(s) 75
PvuII CAGCTG 1 cut(s) 338
SapI GCTCTTC 1 cut(s) 6
Sau3AI GATC 1 cut(s) 212
Sau96I GGNCC 1 cut(s) 75
SchI GAGTC 2 cut(s) 219, 363
ScrFI CCNGG 1 cut(s) 90
SetI ASST 4 cut(s) 27, 52, 340, 422
SfaNI GCATC 2 cut(s) 185, 334
SphI GCATGC 1 cut(s) 274
Sse9I AATT 2 cut(s) 321, 383
StyD4I CCNGG 1 cut(s) 88
TaaI ACNGT 1 cut(s) 358
TaiI ACGT 1 cut(s) 422
TasI AATT 2 cut(s) 321, 383
TfiI GAWTC 1 cut(s) 127
TscAI CASTG 1 cut(s) 211
TseFI GTSAC 1 cut(s) 4
Tsp45I GTSAC 1 cut(s) 4
TspDTI ATGAA 2 cut(s) 113, 315
TspRI CASTG 1 cut(s) 211
XapI RAATTY 1 cut(s) 321
XceI RCATGY 3 cut(s) 192, 274, 278
XmiI GTMKAC 1 cut(s) 279
Zsp2I ATGCAT 1 cut(s) 276
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.