Rh3AG069100

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
Physical Location & Seq
Forward (+)
4814209 .. 4817613
3405 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG069100.1

Sequence Viewer

Length: 297 bp
ATGGGCAGCGAGGAGCCAAGAGACCCATTGCAAGGGGTCGATTGGAAAGCTGTTGGTAATGACATGCAGAGGAATCCCGGTGATAAACCAGGAATAAAGAAGCGGCTTCCCAAGAAGATTAGGCAGATTCCAGAGTGCTATTTTCTTCCTCGAAGATCCCGATTGTATAACTTTACATTTGTTGGAGCATGTATTGCTGGTGGAATTGGTGCAGGGATGCTGGTGGAGATGTGGATAAACAAGAAAGTTAGAGGTACGCCTTTTGGTTTCCATGTTCGTTTTCTTTCCTTATGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

98

Amino Acids

11.18

Weight (kDa)

10.17

Isoelectric Point (pI)

45.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 103
AclWI GGATC 1 cut(s) 150
AfaI GTAC 1 cut(s) 256
AfiI CCNNNNNNNGG 1 cut(s) 32
AjnI CCWGG 1 cut(s) 88
AluBI AGCT 1 cut(s) 50
AluI AGCT 1 cut(s) 50
Alw26I GTCTC 1 cut(s) 15
AlwI GGATC 1 cut(s) 150
ApeKI GCWGC 1 cut(s) 6
AsuC2I CCSGG 1 cut(s) 78
AsuHPI GGTGA 1 cut(s) 92
BbvI GCAGC 1 cut(s) 18
BciT130I CCWGG 1 cut(s) 90
BcnI CCSGG 1 cut(s) 78
BcoDI GTCTC 1 cut(s) 15
BisI GCNGC 2 cut(s) 7, 104
BlsI GCNGC 2 cut(s) 8, 105
Bme1390I CCNGG 2 cut(s) 78, 90
BmiI GGNNCC 1 cut(s) 15
BmrFI CCNGG 2 cut(s) 78, 90
BmsI GCATC 1 cut(s) 207
BpuMI CCSGG 1 cut(s) 78
BsaI GGTCTC 1 cut(s) 15
Bsc4I CCNNNNNNNGG 1 cut(s) 32
Bse3DI GCAATG 1 cut(s) 26
BseBI CCWGG 1 cut(s) 90
BseGI GGATG 1 cut(s) 222
BseLI CCNNNNNNNGG 1 cut(s) 32
BseMI GCAATG 1 cut(s) 26
BseRI GAGGAG 1 cut(s) 26
BseXI GCAGC 1 cut(s) 18
BsgI GTGCAG 1 cut(s) 231
BsiSI CCGG 1 cut(s) 78
BslI CCNNNNNNNGG 1 cut(s) 32
BsmAI GTCTC 1 cut(s) 15
Bso31I GGTCTC 1 cut(s) 15
Bsp143I GATC 1 cut(s) 155
BspACI CCGC 1 cut(s) 103
BspLI GGNNCC 1 cut(s) 15
BspPI GGATC 1 cut(s) 150
BspTNI GGTCTC 1 cut(s) 15
BsrDI GCAATG 1 cut(s) 26
BssMI GATC 1 cut(s) 155
Bst2UI CCWGG 1 cut(s) 90
BstAPI GCANNNNNTGC 1 cut(s) 194
BstF5I GGATG 1 cut(s) 222
BstKTI GATC 1 cut(s) 158
BstMAI GTCTC 1 cut(s) 15
BstMBI GATC 1 cut(s) 155
BstMWI GCNNNNNNNGC 1 cut(s) 194
BstNI CCWGG 1 cut(s) 90
BstNSI RCATGY 2 cut(s) 67, 192
BstSCI CCNGG 2 cut(s) 76, 88
BstV1I GCAGC 1 cut(s) 18
BstX2I RGATCY 1 cut(s) 155
BstYI RGATCY 1 cut(s) 155
BtsCI GGATG 1 cut(s) 222
Csp6I GTAC 1 cut(s) 255
CviAII CATG 3 cut(s) 64, 189, 272
CviJI RGCY 3 cut(s) 16, 50, 106
CviKI_1 RGCY 3 cut(s) 16, 50, 106
CviQI GTAC 1 cut(s) 255
DpnI GATC 1 cut(s) 157
DpnII GATC 1 cut(s) 155
Eco31I GGTCTC 1 cut(s) 15
EcoRII CCWGG 1 cut(s) 88
FaeI CATG 3 cut(s) 67, 192, 275
FaiI YATR 5 cut(s) 65, 168, 190, 273, 292
FatI CATG 3 cut(s) 63, 188, 271
Fnu4HI GCNGC 2 cut(s) 7, 104
FokI GGATG 1 cut(s) 229
Fsp4HI GCNGC 2 cut(s) 7, 104
GluI GCNGC 2 cut(s) 7, 104
HapII CCGG 1 cut(s) 78
Hin1II CATG 3 cut(s) 67, 192, 275
HinfI GANTC 2 cut(s) 73, 127
HpaII CCGG 1 cut(s) 78
HphI GGTGA 1 cut(s) 92
Hpy188III TCNNGA 2 cut(s) 131, 159
HpyCH4V TGCA 3 cut(s) 31, 67, 212
HpyF10VI GCNNNNNNNGC 1 cut(s) 194
Hsp92II CATG 3 cut(s) 67, 192, 275
Kzo9I GATC 1 cut(s) 155
LmnI GCTCC 2 cut(s) 13, 185
LpnPI CCDG 7 cut(s) 75, 91, 102, 144, 183, 198, 206
Lsp1109I GCAGC 1 cut(s) 18
LweI GCATC 1 cut(s) 207
MalI GATC 1 cut(s) 157
MboI GATC 1 cut(s) 155
MboII GAAGA 3 cut(s) 127, 137, 165
MflI RGATCY 1 cut(s) 155
MluCI AATT 1 cut(s) 204
MmeI TCCRAC 1 cut(s) 163
MnlI CCTC 4 cut(s) 4, 63, 159, 245
MspI CCGG 1 cut(s) 78
MspR9I CCNGG 2 cut(s) 78, 90
MvaI CCWGG 1 cut(s) 90
MwoI GCNNNNNNNGC 1 cut(s) 194
NciI CCSGG 1 cut(s) 78
NdeII GATC 1 cut(s) 155
NlaIII CATG 3 cut(s) 67, 192, 275
NlaIV GGNNCC 1 cut(s) 15
NspI RCATGY 2 cut(s) 67, 192
PcsI WCGNNNNNNNCGW 1 cut(s) 157
PfeI GAWTC 2 cut(s) 73, 127
PkrI GCNGC 2 cut(s) 8, 105
Psp6I CCWGG 1 cut(s) 88
PspGI CCWGG 1 cut(s) 88
PspN4I GGNNCC 1 cut(s) 15
PsuI RGATCY 1 cut(s) 155
RsaI GTAC 1 cut(s) 256
RsaNI GTAC 1 cut(s) 255
SatI GCNGC 2 cut(s) 7, 104
Sau3AI GATC 1 cut(s) 155
ScrFI CCNGG 2 cut(s) 78, 90
SetI ASST 2 cut(s) 52, 256
SfaNI GCATC 1 cut(s) 207
Sse9I AATT 1 cut(s) 204
SsiI CCGC 1 cut(s) 103
StyD4I CCNGG 2 cut(s) 76, 88
TaqI TCGA 2 cut(s) 39, 151
TasI AATT 1 cut(s) 204
TauI GCSGC 1 cut(s) 106
TfiI GAWTC 2 cut(s) 73, 127
TseI GCWGC 1 cut(s) 6
XceI RCATGY 2 cut(s) 67, 192
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.