Rorug01G0057900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0003540
Physical Location & Seq
Forward (+)
9534881 .. 9536085
1205 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0057900.1

Sequence Viewer

Length: 921 bp
ATGGATATGATGGTGAGGCAATCAAATAGAAGAGTGGCTTGTGAAAGGTGGAAGGATTTGGTTGGACCAAGAATCAAGAAGATCATTGACAAGATTGGTCAGAGAGCAACTGAATACAGAGCACATAGAGCTGGGGAGTTCATATTCCAGATCACTGGCTGTGGAGAGCATGGCAGCAAGCATGCTGTAGATCTGGGCCTCCATACTTGCACCTGTAAGAGGTGGCAGCTGAGTGGGATACCCTGTGTTCATGCCGTCTGTGCATTAAGGTTCAAGAAACAGGAAGTTGCATTATATTGTGATGACTATCTTATGCCCTCAACCTATATGGAGGCCTACAACCCCATAATCTACCCTATTGCTGGCCAAGAGGATTGGGAACCTGTTGATTACCCCATTGCACCTCCACTTTTCAAGCAGCAACCTAGTCGGCCTAAGATGAAAAGGGTGAAGGAACCAGGAGAGAGGAATCAGACCACAGCCCCACCTGCACCTAAAGAGGGGAAGTTGCCTAAGACTGGTATAAAAATGTCTTGTAGAGTATGTGGCCAGCAAGGACACAACAAGTTAGGTTGTCCAATCATAAAGGCAGCTAAGGCAGCAGCAACTGGAGAAGGTTCATCTAATGGAGCAAATCCTAGTAACAAAAGGAAGAGAACAAACAACAAGCCCAAGAGAGCATCTTTTCCAAAGGGGTGTTCTAACCTGAAGGACCAAATCATAAGGTCAAGAAAGACTTGGAAGAAGATGAAGGAAACTGCTGGTGGTACTTCTACTGTCAATACAAGTGCCTCAGCTTCACAAAGTGTGAAGCAACCTCCTACTCAAAGTAGTCAAAATCCTGCTGCAAGAGGTGCACATAAGAAGTCATCCCAGCCTATAGAACAAGGTCAAGCTTCCTCTGAATGGGCAGGACTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

306

Amino Acids

33.75

Weight (kDa)

9.89

Isoelectric Point (pI)

57.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SWIM PF04434 63 - 89 2.8e-07 SWIM zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 496
Acc36I ACCTGC 1 cut(s) 496
AcoI YGGCCR 2 cut(s) 364, 547
AcuI CTGAAG 1 cut(s) 728
AdeI CACNNNGTG 1 cut(s) 806
AfaI GTAC 1 cut(s) 769
AfiI CCNNNNNNNGG 5 cut(s) 219, 362, 500, 518, 906
AgsI TTSAA 2 cut(s) 274, 415
AjnI CCWGG 1 cut(s) 457
AjuI GAANNNNNNNTTGG 2 cut(s) 682, 714
AluBI AGCT 5 cut(s) 131, 229, 593, 797, 896
AluI AGCT 5 cut(s) 131, 229, 593, 797, 896
Alw21I GWGCWC 2 cut(s) 124, 859
Alw44I GTGCAC 1 cut(s) 855
AlwNI CAGNNNCTG 1 cut(s) 608
AoxI GGCC 5 cut(s) 196, 333, 364, 431, 547
ApaLI GTGCAC 1 cut(s) 855
ApeKI GCWGC 7 cut(s) 174, 226, 418, 590, 599, 602, 845
AspS9I GGNCC 3 cut(s) 65, 196, 712
AsuHPI GGTGA 2 cut(s) 25, 460
AvaII GGWCC 2 cut(s) 65, 712
BaeGI GKGCMC 1 cut(s) 859
BalI TGGCCA 2 cut(s) 366, 549
Bbv12I GWGCWC 2 cut(s) 124, 859
BbvCI CCTCAGC 1 cut(s) 793
BbvI GCAGC 7 cut(s) 186, 238, 430, 602, 611, 614, 832
BccI CCATC 1 cut(s) 4
BceAI ACGGC 1 cut(s) 239
BcgI CGANNNNNNTGC 2 cut(s) 410, 444
BciT130I CCWGG 1 cut(s) 459
BciVI GTATCC 1 cut(s) 231
BfaI CTAG 2 cut(s) 426, 639
BfmI CTRYAG 2 cut(s) 186, 879
BfuAI ACCTGC 1 cut(s) 496
BfuI GTATCC 1 cut(s) 231
BglII AGATCT 1 cut(s) 190
BisI GCNGC 7 cut(s) 175, 227, 419, 591, 600, 603, 846
BlsI GCNGC 7 cut(s) 176, 228, 420, 592, 601, 604, 847
Bme1390I CCNGG 1 cut(s) 459
Bme18I GGWCC 2 cut(s) 65, 712
BmgT120I GGNCC 3 cut(s) 65, 196, 712
BmiI GGNNCC 2 cut(s) 381, 456
BmrFI CCNGG 1 cut(s) 459
BmsI GCATC 1 cut(s) 689
BpmI CTGGAG 1 cut(s) 630
Bpu10I CCTNAGC 2 cut(s) 594, 793
BsaBI GATNNNNATC 1 cut(s) 306
Bsc4I CCNNNNNNNGG 5 cut(s) 219, 362, 500, 518, 906
Bse1I ACTGG 3 cut(s) 160, 523, 613
Bse3DI GCAATG 1 cut(s) 396
Bse8I GATNNNNATC 1 cut(s) 306
BseBI CCWGG 1 cut(s) 459
BseGI GGATG 1 cut(s) 869
BseJI GATNNNNATC 1 cut(s) 306
BseLI CCNNNNNNNGG 5 cut(s) 219, 362, 500, 518, 906
BseMI GCAATG 1 cut(s) 396
BseMII CTCAG 2 cut(s) 221, 807
BseNI ACTGG 3 cut(s) 160, 523, 613
BseSI GKGCMC 1 cut(s) 859
BseXI GCAGC 7 cut(s) 186, 238, 430, 602, 611, 614, 832
BseYI CCCAGC 2 cut(s) 131, 873
BsgI GTGCAG 1 cut(s) 474
BshFI GGCC 5 cut(s) 198, 335, 366, 433, 549
BsiHKAI GWGCWC 2 cut(s) 124, 859
BslI CCNNNNNNNGG 5 cut(s) 219, 362, 500, 518, 906
BsnI GGCC 5 cut(s) 198, 335, 366, 433, 549
Bsp1286I GDGCHC 2 cut(s) 124, 859
Bsp143I GATC 3 cut(s) 81, 150, 190
BspANI GGCC 5 cut(s) 198, 335, 366, 433, 549
BspCNI CTCAG 2 cut(s) 222, 806
BspLI GGNNCC 2 cut(s) 381, 456
BspMI ACCTGC 1 cut(s) 496
BsrDI GCAATG 1 cut(s) 396
BsrI ACTGG 3 cut(s) 160, 523, 613
BssMI GATC 3 cut(s) 81, 150, 190
Bst2UI CCWGG 1 cut(s) 459
Bst4CI ACNGT 1 cut(s) 778
Bst6I CTCTTC 2 cut(s) 25, 647
BstAPI GCANNNNNTGC 1 cut(s) 854
BstC8I GCNNGC 4 cut(s) 179, 183, 364, 551
BstDEI CTNAG 5 cut(s) 230, 435, 513, 594, 793
BstENI CCTNNNNNAGG 1 cut(s) 217
BstF5I GGATG 1 cut(s) 869
BstKTI GATC 3 cut(s) 84, 153, 193
BstMBI GATC 3 cut(s) 81, 150, 190
BstMWI GCNNNNNNNGC 6 cut(s) 128, 260, 488, 596, 599, 854
BstNI CCWGG 1 cut(s) 459
BstNSI RCATGY 1 cut(s) 185
BstSCI CCNGG 1 cut(s) 457
BstSFI CTRYAG 2 cut(s) 186, 879
BstSLI GKGCMC 1 cut(s) 859
BstV1I GCAGC 7 cut(s) 186, 238, 430, 602, 611, 614, 832
BstX2I RGATCY 1 cut(s) 190
BstXI CCANNNNNNTGG 1 cut(s) 155
BstYI RGATCY 1 cut(s) 190
BsuI GTATCC 1 cut(s) 231
BsuRI GGCC 5 cut(s) 198, 335, 366, 433, 549
BtsCI GGATG 1 cut(s) 869
BtsIMutI CAGTG 1 cut(s) 153
BveI ACCTGC 1 cut(s) 496
Cac8I GCNNGC 4 cut(s) 179, 183, 364, 551
CaiI CAGNNNCTG 1 cut(s) 608
Cfr13I GGNCC 3 cut(s) 65, 196, 712
Csp6I GTAC 1 cut(s) 768
CviAII CATG 3 cut(s) 170, 182, 251
CviQI GTAC 1 cut(s) 768
DdeI CTNAG 5 cut(s) 230, 435, 513, 594, 793
DpnI GATC 3 cut(s) 83, 152, 192
DpnII GATC 3 cut(s) 81, 150, 190
DraIII CACNNNGTG 1 cut(s) 806
EaeI YGGCCR 2 cut(s) 364, 547
Eam1104I CTCTTC 2 cut(s) 25, 647
EarI CTCTTC 2 cut(s) 25, 647
Eco147I AGGCCT 1 cut(s) 335
Eco47I GGWCC 2 cut(s) 65, 712
Eco57I CTGAAG 1 cut(s) 728
EcoNI CCTNNNNNAGG 1 cut(s) 217
EcoRII CCWGG 1 cut(s) 457
FaeI CATG 3 cut(s) 173, 185, 254
FalI AAGNNNNNCTT 4 cut(s) 22, 54, 721, 753
FatI CATG 3 cut(s) 169, 181, 250
Fnu4HI GCNGC 7 cut(s) 175, 227, 419, 591, 600, 603, 846
FokI GGATG 1 cut(s) 856
Fsp4HI GCNGC 7 cut(s) 175, 227, 419, 591, 600, 603, 846
FspBI CTAG 2 cut(s) 426, 639
GluI GCNGC 7 cut(s) 175, 227, 419, 591, 600, 603, 846
GsaI CCCAGC 2 cut(s) 135, 877
GsuI CTGGAG 1 cut(s) 630
HaeIII GGCC 5 cut(s) 198, 335, 366, 433, 549
Hin1II CATG 3 cut(s) 173, 185, 254
HindIII AAGCTT 1 cut(s) 894
HinfI GANTC 2 cut(s) 72, 469
HphI GGTGA 2 cut(s) 25, 460
Hpy166II GTNNAC 1 cut(s) 857
Hpy188I TCNGA 3 cut(s) 102, 474, 904
Hpy188III TCNNGA 4 cut(s) 76, 148, 274, 729
Hpy8I GTNNAC 1 cut(s) 857
HpyAV CCTTC 5 cut(s) 46, 445, 608, 703, 745
HpyCH4III ACNGT 1 cut(s) 778
HpyCH4V TGCA 7 cut(s) 210, 263, 290, 401, 491, 848, 857
HpyF10VI GCNNNNNNNGC 6 cut(s) 128, 260, 488, 596, 599, 854
HpyF3I CTNAG 5 cut(s) 230, 435, 513, 594, 793
Hsp92II CATG 3 cut(s) 173, 185, 254
Kzo9I GATC 3 cut(s) 81, 150, 190
LmnI GCTCC 1 cut(s) 629
Lsp1109I GCAGC 7 cut(s) 186, 238, 430, 602, 611, 614, 832
LweI GCATC 1 cut(s) 689
MaeI CTAG 2 cut(s) 426, 639
MaeIII GTNAC 1 cut(s) 641
MalI GATC 3 cut(s) 83, 152, 192
MboI GATC 3 cut(s) 81, 150, 190
MboII GAAGA 5 cut(s) 42, 91, 664, 754, 757
MflI RGATCY 1 cut(s) 190
MhlI GDGCHC 2 cut(s) 124, 859
MlsI TGGCCA 2 cut(s) 366, 549
MluNI TGGCCA 2 cut(s) 366, 549
MmeI TCCRAC 1 cut(s) 43
Mox20I TGGCCA 2 cut(s) 366, 549
MscI TGGCCA 2 cut(s) 366, 549
MseI TTAA 1 cut(s) 266
Msp20I TGGCCA 2 cut(s) 366, 549
MspA1I CMGCKG 1 cut(s) 229
MspR9I CCNGG 1 cut(s) 459
MvaI CCWGG 1 cut(s) 459
MwoI GCNNNNNNNGC 6 cut(s) 128, 260, 488, 596, 599, 854
NdeII GATC 3 cut(s) 81, 150, 190
NlaIII CATG 3 cut(s) 173, 185, 254
NlaIV GGNNCC 2 cut(s) 381, 456
NspI RCATGY 1 cut(s) 185
PaeI GCATGC 1 cut(s) 185
PaqCI CACCTGC 1 cut(s) 496
PceI AGGCCT 1 cut(s) 335
PfeI GAWTC 2 cut(s) 72, 469
PkrI GCNGC 7 cut(s) 176, 228, 420, 592, 601, 604, 847
Psp6I CCWGG 1 cut(s) 457
PspFI CCCAGC 2 cut(s) 131, 873
PspGI CCWGG 1 cut(s) 457
PspN4I GGNNCC 2 cut(s) 381, 456
PspPI GGNCC 3 cut(s) 65, 196, 712
PstNI CAGNNNCTG 1 cut(s) 608
PsuI RGATCY 1 cut(s) 190
PvuII CAGCTG 1 cut(s) 229
RsaI GTAC 1 cut(s) 769
RsaNI GTAC 1 cut(s) 768
SaqAI TTAA 1 cut(s) 266
SatI GCNGC 7 cut(s) 175, 227, 419, 591, 600, 603, 846
Sau3AI GATC 3 cut(s) 81, 150, 190
Sau96I GGNCC 3 cut(s) 65, 196, 712
ScrFI CCNGG 1 cut(s) 459
SduI GDGCHC 2 cut(s) 124, 859
SfaNI GCATC 1 cut(s) 689
SfcI CTRYAG 2 cut(s) 186, 879
SinI GGWCC 2 cut(s) 65, 712
SphI GCATGC 1 cut(s) 185
SseBI AGGCCT 1 cut(s) 335
SspMI CTAG 2 cut(s) 426, 639
StuI AGGCCT 1 cut(s) 335
StyD4I CCNGG 1 cut(s) 457
TaaI ACNGT 1 cut(s) 778
TfiI GAWTC 2 cut(s) 72, 469
Tru1I TTAA 1 cut(s) 266
Tru9I TTAA 1 cut(s) 266
TscAI CASTG 1 cut(s) 160
TseI GCWGC 7 cut(s) 174, 226, 418, 590, 599, 602, 845
TspDTI ATGAA 5 cut(s) 130, 239, 455, 609, 764
TspRI CASTG 1 cut(s) 160
VneI GTGCAC 1 cut(s) 855
VpaK11BI GGWCC 2 cut(s) 65, 712
XagI CCTNNNNNAGG 1 cut(s) 217
XceI RCATGY 1 cut(s) 185
XspI CTAG 2 cut(s) 426, 639
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.