Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0010248

Physical Location & Seq

Genomic Coordinates Reverse (-)

19988969 .. 19991735

Gene Structure 2767 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g17700.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 984 bp

ATGGCGAGCAGTTTGCAGCTGCCAATCTCCATATCGTCAGCTCCTGCGTCGGCGTTTAGACCCAGAAATGCTCGGAAGCTTACAGCATTTTGCTCCGTTAACGCCAAAGCAACGGCCAAAATCCCAACTCCTCCAATAAACCCCAAGGACCCCTTTCTTTCGAGGCTCGCTGCGGTGGCTGCCAAGTCCCCGGAAACCTTGCTGAACCGGCCGCCTCAAAATTCCGACTCTCTCCCGTACTTGGATGTGTTTGATGAACCTATTCTCATGGCCACTCCTGCCCAAGTGGAAAGATCGGTTTCTTACAACGAGCATAGGCCCAAGAAGCCACCTCCAGACCTGCCCTCGTTGTTACTTCACGGAAGAATAGTTTATATTGGCATGCCTTTAGTGCCAGCAGTCACAGAGCTTATTGTTGCGGAATTGATGTATCTGCAATGGATCGATCCTAAACAACCAATATATATTTATATTAATTCGACGGGAACCACCCGTGATGATGGTGAAACCGTTGGCATGGAGTCAGAGGGATTTGCTATCTATGATGCTATGATGCAGTTGAAAAATGAGATACATACGGTTGCTGTTGGGGCCGCTATAGGTCAAGCATGTCTTTTGCTTTCAGCAGGAACTAAGGGCAAACGATTTATGATGCCACATGCCAAAGCAATGATCCAGCAACCTCGTGTCCCATCATCTGGACTGATGCCTGCTAGTGATGTTCTTATTCGTGCAAAAGAGGTAATCACAAATAGGGACATTCTCGTAAAGCTTCTGGCCAAACACACTGGAAATTCAGAGGAGGCTGTTGCTAAAGTGATGAGAAGACCATTTTATATGGATTCTACAACTGCTAAAGAATTCGGGGTGATTGACAAGATCCTTTGGCGTGGTCAAGAAAAGATAATGGCAGATGTAGCCTCCCCTGAGGAATGGGATAATAAAGCTGGCGTCAAAGTTGTAGATGAACTCGGTGGTCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CLP_protease

Protein Analysis

328

Amino Acids

35.74

Weight (kDa)

8.69

Isoelectric Point (pI)

49.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010248)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09130 AT1G09130
fragaria_vesca	FvH4_6g06550 FvH4_6g06550 FvH4_6g06550
malus_domestica	MD04G1200900.v1.1 MD12G1213400.v1.1
prunus_persica	Prupe.6G321000_v2.0.a1
pyrus_communis	pycom04g17700 pycom12g19930
rosa_chinensis	RchiOBHm_Chr3g0455701
rosa_laevigata	RLG00000025339
rosa_multiflora	Rmu_sc0002883.1_g000012 Rmu_sc0013268.1_g000005
rosa_roxburghii	Rroxscaffold_6G00423570 Rroxscaffold_6G00424080
rosa_rugosa	Rorug03G0009300
rosa_samantha	Rh3AG068900 Rh3DG071400
rosa_wichuraiana	Rw3G005540 Rw3G005910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	348
AccB7I	CCANNNNNTGG	1 cut(s)	698
AciI	CCGC	4 cut(s)	173, 212, 419, 594
AclWI	GGATC	4 cut(s)	440, 449, 667, 874
AcoI	YGGCCR	4 cut(s)	114, 209, 270, 777
AcsI	RAATTY	3 cut(s)	220, 793, 860
AcyI	GRCGYC	1 cut(s)	951
AfaI	GTAC	1 cut(s)	239
AfiI	CCNNNNNNNGG	2 cut(s)	241, 698
AgsI	TTSAA	1 cut(s)	562
AluBI	AGCT	6 cut(s)	19, 41, 79, 409, 772, 947
AluI	AGCT	6 cut(s)	19, 41, 79, 409, 772, 947
AlwI	GGATC	4 cut(s)	440, 449, 667, 874
AlwNI	CAGNNNCTG	1 cut(s)	44
AoxI	GGCC	6 cut(s)	114, 209, 270, 317, 591, 777
ApeKI	GCWGC	4 cut(s)	16, 19, 170, 179
ApoI	RAATTY	3 cut(s)	220, 793, 860
AseI	ATTAAT	1 cut(s)	474
Asp700I	GAANNNNTTC	1 cut(s)	261
AspS9I	GGNCC	3 cut(s)	148, 318, 591
AsuC2I	CCSGG	1 cut(s)	191
AsuHPI	GGTGA	2 cut(s)	515, 880
AvaII	GGWCC	1 cut(s)	148
AxyI	CCTNAGG	1 cut(s)	927
BalI	TGGCCA	2 cut(s)	272, 779
BauI	CACGAG	1 cut(s)	684
BbsI	GAAGAC	1 cut(s)	832
BbvI	GCAGC	4 cut(s)	6, 28, 157, 166
BccI	CCATC	2 cut(s)	494, 700
BceAI	ACGGC	1 cut(s)	129
BcgI	CGANNNNNNTGC	1 cut(s)	29
BcnI	CCSGG	1 cut(s)	191
BfaI	CTAG	1 cut(s)	714
BfmI	CTRYAG	1 cut(s)	597
BfuAI	ACCTGC	1 cut(s)	348
BisI	GCNGC	6 cut(s)	17, 20, 171, 180, 212, 594
BlsI	GCNGC	6 cut(s)	18, 21, 172, 181, 213, 595
Bme1390I	CCNGG	1 cut(s)	191
Bme18I	GGWCC	1 cut(s)	148
BmgT120I	GGNCC	3 cut(s)	148, 318, 591
BmiI	GGNNCC	3 cut(s)	150, 487, 592
BmrFI	CCNGG	1 cut(s)	191
BmsI	GCATC	4 cut(s)	535, 543, 642, 696
BpiI	GAAGAC	1 cut(s)	832
BpmI	CTGGAG	1 cut(s)	318
BpuMI	CCSGG	1 cut(s)	191
Bsa29I	ATCGAT	1 cut(s)	444
BsaHI	GRCGYC	1 cut(s)	951
BsaJI	CCNNGG	2 cut(s)	144, 189
Bsc4I	CCNNNNNNNGG	2 cut(s)	241, 698
Bse118I	RCCGGY	1 cut(s)	207
Bse1I	ACTGG	1 cut(s)	793
Bse21I	CCTNAGG	1 cut(s)	927
Bse3DI	GCAATG	2 cut(s)	443, 675
BseCI	ATCGAT	1 cut(s)	444
BseDI	CCNNGG	2 cut(s)	144, 189
BseGI	GGATG	1 cut(s)	250
BseLI	CCNNNNNNNGG	2 cut(s)	241, 698
BseMI	GCAATG	2 cut(s)	443, 675
BseMII	CTCAG	1 cut(s)	918
BseNI	ACTGG	1 cut(s)	793
BseRI	GAGGAG	2 cut(s)	120, 815
BseX3I	CGGCCG	1 cut(s)	209
BseXI	GCAGC	4 cut(s)	6, 28, 157, 166
Bsh1285I	CGRYCG	1 cut(s)	212
BshFI	GGCC	6 cut(s)	116, 211, 272, 319, 593, 779
BshVI	ATCGAT	1 cut(s)	444
BsiEI	CGRYCG	1 cut(s)	212
BsiSI	CCGG	2 cut(s)	191, 208
BslFI	GGGAC	3 cut(s)	172, 674, 770
BslI	CCNNNNNNNGG	2 cut(s)	241, 698
BsmFI	GGGAC	3 cut(s)	172, 674, 770
BsnI	GGCC	6 cut(s)	116, 211, 272, 319, 593, 779
Bsp143I	GATC	5 cut(s)	293, 441, 445, 672, 879
BspACI	CCGC	4 cut(s)	173, 212, 419, 594
BspANI	GGCC	6 cut(s)	116, 211, 272, 319, 593, 779
BspCNI	CTCAG	1 cut(s)	919
BspDI	ATCGAT	1 cut(s)	444
BspLI	GGNNCC	3 cut(s)	150, 487, 592
BspMI	ACCTGC	1 cut(s)	348
BspPI	GGATC	4 cut(s)	440, 449, 667, 874
BsrDI	GCAATG	2 cut(s)	443, 675
BsrFI	RCCGGY	1 cut(s)	207
BsrI	ACTGG	1 cut(s)	793
BssAI	RCCGGY	1 cut(s)	207
BssECI	CCNNGG	2 cut(s)	144, 189
BssMI	GATC	5 cut(s)	293, 441, 445, 672, 879
BssNI	GRCGYC	1 cut(s)	951
BssSI	CACGAG	1 cut(s)	684
BssT1I	CCWWGG	1 cut(s)	144
Bst2BI	CACGAG	1 cut(s)	684
Bst4CI	ACNGT	2 cut(s)	511, 580
BstACI	GRCGYC	1 cut(s)	951
BstC8I	GCNNGC	6 cut(s)	7, 168, 383, 396, 711, 949
BstDEI	CTNAG	2 cut(s)	633, 927
BstF5I	GGATG	1 cut(s)	250
BstKTI	GATC	5 cut(s)	296, 444, 448, 675, 882
BstMBI	GATC	5 cut(s)	293, 441, 445, 672, 879
BstMCI	CGRYCG	1 cut(s)	212
BstMWI	GCNNNNNNNGC	8 cut(s)	176, 179, 208, 278, 325, 391, 590, 917
BstNSI	RCATGY	3 cut(s)	385, 612, 662
BstSCI	CCNGG	1 cut(s)	189
BstSFI	CTRYAG	1 cut(s)	597
BstV1I	GCAGC	4 cut(s)	6, 28, 157, 166
BstV2I	GAAGAC	1 cut(s)	832
BstX2I	RGATCY	1 cut(s)	879
BstYI	RGATCY	1 cut(s)	879
BstZI	CGGCCG	1 cut(s)	209
Bsu15I	ATCGAT	1 cut(s)	444
Bsu36I	CCTNAGG	1 cut(s)	927
BsuRI	GGCC	6 cut(s)	116, 211, 272, 319, 593, 779
BsuTUI	ATCGAT	1 cut(s)	444
BtsCI	GGATG	1 cut(s)	250
BtsIMutI	CAGTG	1 cut(s)	786
BveI	ACCTGC	1 cut(s)	348
Cac8I	GCNNGC	6 cut(s)	7, 168, 383, 396, 711, 949
CaiI	CAGNNNCTG	1 cut(s)	44
Cfr10I	RCCGGY	1 cut(s)	207
Cfr13I	GGNCC	3 cut(s)	148, 318, 591
ClaI	ATCGAT	1 cut(s)	444
CseI	GACGC	2 cut(s)	36, 940
Csp6I	GTAC	1 cut(s)	238
CviAII	CATG	5 cut(s)	268, 382, 517, 609, 659
CviQI	GTAC	1 cut(s)	238
DdeI	CTNAG	2 cut(s)	633, 927
DpnI	GATC	5 cut(s)	295, 443, 447, 674, 881
DpnII	GATC	5 cut(s)	293, 441, 445, 672, 879
EaeI	YGGCCR	4 cut(s)	114, 209, 270, 777
EagI	CGGCCG	1 cut(s)	209
EclXI	CGGCCG	1 cut(s)	209
Eco130I	CCWWGG	1 cut(s)	144
Eco47I	GGWCC	1 cut(s)	148
Eco52I	CGGCCG	1 cut(s)	209
Eco81I	CCTNAGG	1 cut(s)	927
EcoO109I	RGGNCCY	1 cut(s)	148
EcoRI	GAATTC	1 cut(s)	860
EcoT14I	CCWWGG	1 cut(s)	144
ErhI	CCWWGG	1 cut(s)	144
FaeI	CATG	5 cut(s)	271, 385, 520, 612, 662
FalI	AAGNNNNNCTT	4 cut(s)	137, 169, 597, 629
FaqI	GGGAC	3 cut(s)	172, 674, 770
FatI	CATG	5 cut(s)	267, 381, 516, 608, 658
Fnu4HI	GCNGC	6 cut(s)	17, 20, 171, 180, 212, 594
FokI	GGATG	1 cut(s)	257
Fsp4HI	GCNGC	6 cut(s)	17, 20, 171, 180, 212, 594
FspBI	CTAG	1 cut(s)	714
GluI	GCNGC	6 cut(s)	17, 20, 171, 180, 212, 594
GsuI	CTGGAG	1 cut(s)	318
HaeIII	GGCC	6 cut(s)	116, 211, 272, 319, 593, 779
HapII	CCGG	2 cut(s)	191, 208
HgaI	GACGC	2 cut(s)	36, 940
Hin1I	GRCGYC	1 cut(s)	951
Hin1II	CATG	5 cut(s)	271, 385, 520, 612, 662
HincII	GTYRAC	1 cut(s)	100
HindII	GTYRAC	1 cut(s)	100
HindIII	AAGCTT	2 cut(s)	77, 770
HinfI	GANTC	3 cut(s)	227, 521, 842
HpaI	GTTAAC	1 cut(s)	100
HpaII	CCGG	2 cut(s)	191, 208
HphI	GGTGA	2 cut(s)	515, 880
Hpy166II	GTNNAC	1 cut(s)	100
Hpy188I	TCNGA	4 cut(s)	75, 226, 526, 799
Hpy188III	TCNNGA	3 cut(s)	335, 699, 896
Hpy8I	GTNNAC	1 cut(s)	100
Hpy99I	CGWCG	2 cut(s)	52, 484
HpyCH4III	ACNGT	2 cut(s)	511, 580
HpyCH4V	TGCA	4 cut(s)	16, 436, 556, 734
HpyF10VI	GCNNNNNNNGC	8 cut(s)	176, 179, 208, 278, 325, 391, 590, 917
HpyF3I	CTNAG	2 cut(s)	633, 927
Hsp92I	GRCGYC	1 cut(s)	951
Hsp92II	CATG	5 cut(s)	271, 385, 520, 612, 662
KspAI	GTTAAC	1 cut(s)	100
Kzo9I	GATC	5 cut(s)	293, 441, 445, 672, 879
LmnI	GCTCC	2 cut(s)	46, 98
Lsp1109I	GCAGC	4 cut(s)	6, 28, 157, 166
LweI	GCATC	4 cut(s)	535, 543, 642, 696
MaeI	CTAG	1 cut(s)	714
MaeIII	GTNAC	2 cut(s)	351, 400
MalI	GATC	5 cut(s)	295, 443, 447, 674, 881
MboI	GATC	5 cut(s)	293, 441, 445, 672, 879
MboII	GAAGA	2 cut(s)	375, 837
MflI	RGATCY	1 cut(s)	879
MlsI	TGGCCA	2 cut(s)	272, 779
MluCI	AATT	5 cut(s)	220, 422, 475, 793, 860
MluNI	TGGCCA	2 cut(s)	272, 779
MlyI	GAGTC	2 cut(s)	221, 530
MmeI	TCCRAC	1 cut(s)	249
Mox20I	TGGCCA	2 cut(s)	272, 779
MroXI	GAANNNNTTC	1 cut(s)	261
MscI	TGGCCA	2 cut(s)	272, 779
MseI	TTAA	2 cut(s)	99, 474
Msp20I	TGGCCA	2 cut(s)	272, 779
MspA1I	CMGCKG	1 cut(s)	19
MspI	CCGG	2 cut(s)	191, 208
MspR9I	CCNGG	1 cut(s)	191
MwoI	GCNNNNNNNGC	8 cut(s)	176, 179, 208, 278, 325, 391, 590, 917
NciI	CCSGG	1 cut(s)	191
NdeII	GATC	5 cut(s)	293, 441, 445, 672, 879
NlaIII	CATG	5 cut(s)	271, 385, 520, 612, 662
NlaIV	GGNNCC	3 cut(s)	150, 487, 592
NmuCI	GTSAC	1 cut(s)	400
NspI	RCATGY	3 cut(s)	385, 612, 662
PaeI	GCATGC	1 cut(s)	385
PdmI	GAANNNNTTC	1 cut(s)	261
PfeI	GAWTC	1 cut(s)	842
PflMI	CCANNNNNTGG	1 cut(s)	698
PkrI	GCNGC	6 cut(s)	18, 21, 172, 181, 213, 595
PleI	GAGTC	2 cut(s)	221, 529
PpsI	GAGTC	2 cut(s)	221, 529
PpuMI	RGGWCCY	1 cut(s)	148
PshBI	ATTAAT	1 cut(s)	474
Psp5II	RGGWCCY	1 cut(s)	148
PspN4I	GGNNCC	3 cut(s)	150, 487, 592
PspPI	GGNCC	3 cut(s)	148, 318, 591
PspPPI	RGGWCCY	1 cut(s)	148
PstNI	CAGNNNCTG	1 cut(s)	44
PsuI	RGATCY	1 cut(s)	879
PvuII	CAGCTG	1 cut(s)	19
RsaI	GTAC	1 cut(s)	239
RsaNI	GTAC	1 cut(s)	238
SaqAI	TTAA	2 cut(s)	99, 474
SatI	GCNGC	6 cut(s)	17, 20, 171, 180, 212, 594
Sau3AI	GATC	5 cut(s)	293, 441, 445, 672, 879
Sau96I	GGNCC	3 cut(s)	148, 318, 591
SchI	GAGTC	2 cut(s)	221, 530
ScrFI	CCNGG	1 cut(s)	191
SfaNI	GCATC	4 cut(s)	535, 543, 642, 696
SfcI	CTRYAG	1 cut(s)	597
SinI	GGWCC	1 cut(s)	148
SphI	GCATGC	1 cut(s)	385
Sse9I	AATT	5 cut(s)	220, 422, 475, 793, 860
SsiI	CCGC	4 cut(s)	173, 212, 419, 594
SspMI	CTAG	1 cut(s)	714
StyD4I	CCNGG	1 cut(s)	189
StyI	CCWWGG	1 cut(s)	144
TaaI	ACNGT	2 cut(s)	511, 580
TaqI	TCGA	3 cut(s)	161, 444, 479
TasI	AATT	5 cut(s)	220, 422, 475, 793, 860
TauI	GCSGC	2 cut(s)	214, 596
TfiI	GAWTC	1 cut(s)	842
Tru1I	TTAA	2 cut(s)	99, 474
Tru9I	TTAA	2 cut(s)	99, 474
TscAI	CASTG	1 cut(s)	793
TseFI	GTSAC	1 cut(s)	400
TseI	GCWGC	4 cut(s)	16, 19, 170, 179
Tsp45I	GTSAC	1 cut(s)	400
TspDTI	ATGAA	2 cut(s)	270, 981
TspGWI	ACGGA	2 cut(s)	85, 375
TspRI	CASTG	1 cut(s)	793
Van91I	CCANNNNNTGG	1 cut(s)	698
VpaK11BI	GGWCC	1 cut(s)	148
VspI	ATTAAT	1 cut(s)	474
XapI	RAATTY	3 cut(s)	220, 793, 860
XceI	RCATGY	3 cut(s)	385, 612, 662
XmnI	GAANNNNTTC	1 cut(s)	261
XspI	CTAG	1 cut(s)	714

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.