AT1G09250

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0013101
Physical Location & Seq
Forward (+)
2989141 .. 2990427
1287 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G09250.1

Sequence Viewer

Length: 624 bp
ATGGTGGAGTCTCTGTTCCCGAGCATCGAAAACACAGGTGAATCGTCTCGAAGAAAGAAGCCGAGGATATCAGAGACGGCGGAGGCGGAGATAGAGGCACGACGTGTCAACGAAGAAAGCTTGAAGAGATGGAAAACGAATCGTGTGCAACAGATCTACGCTTGTAAGCTCGTCGAAGCTTTACGCCGAGTTCGTCAGAGATCTTCCACCACCAGCAACAACGAGACCGATAAACTCGTCTCCGGCGCGGCGAGGGAGATACGTGATACGGCGGATCGAGTTCTAGCTGCGTCCGCTCGTGGTACGACTCGGTGGAGCAGAGCGATTTTAGCGAGTCGCGTCCGAGCGAAGCTGAAGAAACATAGAAAGGCGAAAAAGTCAACGGGAAATTGTAAATCGAGAAAAGGTCTCACGGAGACGAATCGGATTAAGTTACCGGCGGTTGAGAGAAAACTGAAGATTCTTGGCCGTTTGGTTCCTGGTTGCCGGAAAGTCTCTGTACCGAATCTTTTAGATGAAGCGACCGATTACATCGCAGCGTTAGAGATGCAGGTTCGAGCCATGGAGGCTCTCGCCGAACTTTTAACCGCAGCCGCACCACGGACGACGTTGACCGGAACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

207

Amino Acids

23.15

Weight (kDa)

10.71

Isoelectric Point (pI)

45.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
IBH1_N PF26576 48 - 112 1.3e-08 IBH1-like, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013101)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G09250
fragaria_vesca FvH4_6g07630 FvH4_6g07630
malus_domestica MD04G1192700.v1.1 MD12G1204600.v1.1
prunus_persica Prupe.6G311800_v2.0.a1
pyrus_communis pycom04g17000 pycom12g19250
rosa_chinensis RchiOBHm_Chr3g0457291
rosa_laevigata RLG00000025236
rosa_multiflora Rmu_sc0005442.1_g000012
rosa_roxburghii Rroxscaffold_6G00422010
rosa_rugosa Rorug03G0019700
rosa_samantha Rh3AG079800 Rh3BG081500 Rh3CG081900 Rh3DG083500
rosa_wichuraiana Rw3G006880

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 541
AccBSI CCGCTC 1 cut(s) 296
AccII CGCG 2 cut(s) 248, 339
AciI CCGC 8 cut(s) 80, 86, 248, 272, 294, 440, 588, 594
AclWI GGATC 1 cut(s) 282
AcoI YGGCCR 1 cut(s) 466
AcuI CTGAAG 2 cut(s) 374, 476
AdeI CACNNNGTG 1 cut(s) 104
AfaI GTAC 2 cut(s) 304, 501
AfiI CCNNNNNNNGG 1 cut(s) 600
AflIII ACRYGT 1 cut(s) 103
AgsI TTSAA 1 cut(s) 124
AjiI CACGTC 1 cut(s) 104
AjnI CCWGG 1 cut(s) 478
AloI GAACNNNNNNTCC 1 cut(s) 31
AluBI AGCT 5 cut(s) 120, 169, 179, 287, 352
AluI AGCT 5 cut(s) 120, 169, 179, 287, 352
Alw26I GTCTC 8 cut(s) 15, 51, 68, 218, 244, 410, 413, 499
AlwI GGATC 1 cut(s) 282
Ama87I CYCGRG 1 cut(s) 19
AoxI GGCC 1 cut(s) 466
ApeKI GCWGC 3 cut(s) 287, 536, 590
AspLEI GCGC 1 cut(s) 248
AsuHPI GGTGA 1 cut(s) 50
AvaI CYCGRG 1 cut(s) 19
BauI CACGAG 1 cut(s) 297
BbvI GCAGC 3 cut(s) 274, 548, 602
BccI CCATC 1 cut(s) 123
BceAI ACGGC 3 cut(s) 93, 285, 453
BcgI CGANNNNNNTGC 2 cut(s) 127, 161
BciT130I CCWGG 1 cut(s) 480
BcoDI GTCTC 8 cut(s) 15, 51, 68, 218, 244, 410, 413, 499
BfaI CTAG 1 cut(s) 284
BfuAI ACCTGC 1 cut(s) 541
BglI GCCNNNNNGGC 1 cut(s) 566
BglII AGATCT 2 cut(s) 153, 200
BisI GCNGC 5 cut(s) 249, 288, 537, 591, 594
BlsI GCNGC 5 cut(s) 250, 289, 538, 592, 595
Bme1390I CCNGG 1 cut(s) 480
BmeT110I CYCGRG 1 cut(s) 19
BmgBI CACGTC 1 cut(s) 104
BmiI GGNNCC 1 cut(s) 477
BmrFI CCNGG 1 cut(s) 480
BmsI GCATC 2 cut(s) 33, 537
BsaAI YACGTR 1 cut(s) 263
BsaI GGTCTC 2 cut(s) 218, 413
BsaJI CCNNGG 3 cut(s) 62, 561, 599
BsaWI WCCGGW 1 cut(s) 614
BsaXI ACNNNNNCTCC 1 cut(s) 29
Bsc4I CCNNNNNNNGG 1 cut(s) 600
Bse118I RCCGGY 1 cut(s) 436
BseBI CCWGG 1 cut(s) 480
BseDI CCNNGG 3 cut(s) 62, 561, 599
BseLI CCNNNNNNNGG 1 cut(s) 600
BseXI GCAGC 3 cut(s) 274, 548, 602
Bsh1236I CGCG 2 cut(s) 248, 339
Bsh1285I CGRYCG 1 cut(s) 525
BshFI GGCC 1 cut(s) 468
BsiEI CGRYCG 1 cut(s) 525
BsiHKCI CYCGRG 1 cut(s) 19
BsiSI CCGG 4 cut(s) 243, 437, 487, 615
BslI CCNNNNNNNGG 1 cut(s) 600
BsmAI GTCTC 8 cut(s) 15, 51, 68, 218, 244, 410, 413, 499
BsmBI CGTCTC 4 cut(s) 51, 68, 244, 410
BsnI GGCC 1 cut(s) 468
Bso31I GGTCTC 2 cut(s) 218, 413
BsoBI CYCGRG 1 cut(s) 19
Bsp143I GATC 3 cut(s) 153, 200, 274
Bsp19I CCATGG 1 cut(s) 561
BspACI CCGC 8 cut(s) 80, 86, 248, 272, 294, 440, 588, 594
BspANI GGCC 1 cut(s) 468
BspFNI CGCG 2 cut(s) 248, 339
BspLI GGNNCC 1 cut(s) 477
BspMI ACCTGC 1 cut(s) 541
BspPI GGATC 1 cut(s) 282
BspTNI GGTCTC 2 cut(s) 218, 413
BsrBI CCGCTC 1 cut(s) 296
BsrFI RCCGGY 1 cut(s) 436
BssAI RCCGGY 1 cut(s) 436
BssECI CCNNGG 3 cut(s) 62, 561, 599
BssMI GATC 3 cut(s) 153, 200, 274
BssSI CACGAG 1 cut(s) 297
BssT1I CCWWGG 1 cut(s) 561
Bst2BI CACGAG 1 cut(s) 297
Bst2UI CCWGG 1 cut(s) 480
Bst6I CTCTTC 1 cut(s) 119
BstBAI YACGTR 1 cut(s) 263
BstDSI CCRYGG 2 cut(s) 561, 599
BstFNI CGCG 2 cut(s) 248, 339
BstHHI GCGC 1 cut(s) 248
BstKTI GATC 3 cut(s) 156, 203, 277
BstMAI GTCTC 8 cut(s) 15, 51, 68, 218, 244, 410, 413, 499
BstMBI GATC 3 cut(s) 153, 200, 274
BstMCI CGRYCG 1 cut(s) 525
BstMWI GCNNNNNNNGC 3 cut(s) 293, 329, 566
BstNI CCWGG 1 cut(s) 480
BstSCI CCNGG 1 cut(s) 478
BstUI CGCG 2 cut(s) 248, 339
BstV1I GCAGC 3 cut(s) 274, 548, 602
BstX2I RGATCY 2 cut(s) 153, 200
BstYI RGATCY 2 cut(s) 153, 200
BsuRI GGCC 1 cut(s) 468
BtgI CCRYGG 2 cut(s) 561, 599
BtgZI GCGATG 1 cut(s) 517
BtrI CACGTC 1 cut(s) 104
BveI ACCTGC 1 cut(s) 541
CfoI GCGC 1 cut(s) 248
Cfr10I RCCGGY 1 cut(s) 436
CseI GACGC 2 cut(s) 279, 328
Csp6I GTAC 2 cut(s) 303, 500
CviAII CATG 1 cut(s) 562
CviQI GTAC 2 cut(s) 303, 500
DpnI GATC 3 cut(s) 155, 202, 276
DpnII GATC 3 cut(s) 153, 200, 274
DraIII CACNNNGTG 1 cut(s) 104
EaeI YGGCCR 1 cut(s) 466
Eam1104I CTCTTC 1 cut(s) 119
EarI CTCTTC 1 cut(s) 119
EciI GGCGGA 3 cut(s) 95, 101, 287
Eco130I CCWWGG 1 cut(s) 561
Eco31I GGTCTC 2 cut(s) 218, 413
Eco32I GATATC 1 cut(s) 69
Eco57I CTGAAG 2 cut(s) 374, 476
Eco88I CYCGRG 1 cut(s) 19
EcoRII CCWGG 1 cut(s) 478
EcoRV GATATC 1 cut(s) 69
EcoT14I CCWWGG 1 cut(s) 561
ErhI CCWWGG 1 cut(s) 561
Esp3I CGTCTC 4 cut(s) 51, 68, 244, 410
FaeI CATG 1 cut(s) 565
FaiI YATR 2 cut(s) 363, 563
FatI CATG 1 cut(s) 561
Fnu4HI GCNGC 5 cut(s) 249, 288, 537, 591, 594
Fsp4HI GCNGC 5 cut(s) 249, 288, 537, 591, 594
FspBI CTAG 1 cut(s) 284
GlaI GCGC 1 cut(s) 247
GluI GCNGC 5 cut(s) 249, 288, 537, 591, 594
HaeIII GGCC 1 cut(s) 468
HapII CCGG 4 cut(s) 243, 437, 487, 615
HgaI GACGC 2 cut(s) 279, 328
HhaI GCGC 1 cut(s) 248
Hin1II CATG 1 cut(s) 565
Hin6I GCGC 1 cut(s) 246
HinP1I GCGC 1 cut(s) 246
HincII GTYRAC 3 cut(s) 109, 381, 612
HindII GTYRAC 3 cut(s) 109, 381, 612
HindIII AAGCTT 2 cut(s) 118, 177
HinfI GANTC 8 cut(s) 8, 41, 139, 307, 334, 421, 460, 505
HpaII CCGG 4 cut(s) 243, 437, 487, 615
HphI GGTGA 1 cut(s) 50
Hpy166II GTNNAC 3 cut(s) 109, 381, 612
Hpy188I TCNGA 4 cut(s) 73, 198, 344, 426
Hpy188III TCNNGA 3 cut(s) 19, 48, 399
Hpy8I GTNNAC 3 cut(s) 109, 381, 612
Hpy99I CGWCG 3 cut(s) 105, 176, 610
HpyCH4IV ACGT 3 cut(s) 103, 262, 608
HpyCH4V TGCA 2 cut(s) 148, 550
HpyF10VI GCNNNNNNNGC 3 cut(s) 293, 329, 566
HpySE526I ACGT 3 cut(s) 103, 262, 608
Hsp92II CATG 1 cut(s) 565
HspAI GCGC 1 cut(s) 246
Kzo9I GATC 3 cut(s) 153, 200, 274
LmnI GCTCC 1 cut(s) 315
LpnPI CCDG 8 cut(s) 21, 226, 256, 450, 465, 492, 500, 536
Lsp1109I GCAGC 3 cut(s) 274, 548, 602
LweI GCATC 2 cut(s) 33, 537
MaeI CTAG 1 cut(s) 284
MaeII ACGT 3 cut(s) 103, 262, 608
MaeIII GTNAC 1 cut(s) 432
MalI GATC 3 cut(s) 155, 202, 276
MbiI CCGCTC 1 cut(s) 296
MboI GATC 3 cut(s) 153, 200, 274
MboII GAAGA 6 cut(s) 63, 125, 136, 195, 367, 469
MflI RGATCY 2 cut(s) 153, 200
MluCI AATT 1 cut(s) 388
MlyI GAGTC 3 cut(s) 17, 301, 343
MnlI CCTC 5 cut(s) 57, 76, 88, 246, 559
MseI TTAA 3 cut(s) 429, 584, 622
MspI CCGG 4 cut(s) 243, 437, 487, 615
MspR9I CCNGG 1 cut(s) 480
MvaI CCWGG 1 cut(s) 480
MvnI CGCG 2 cut(s) 248, 339
MwoI GCNNNNNNNGC 3 cut(s) 293, 329, 566
NcoI CCATGG 1 cut(s) 561
NdeII GATC 3 cut(s) 153, 200, 274
NlaIII CATG 1 cut(s) 565
NlaIV GGNNCC 1 cut(s) 477
NmeAIII GCCGAG 2 cut(s) 87, 212
PcsI WCGNNNNNNNCGW 1 cut(s) 190
PfeI GAWTC 5 cut(s) 41, 139, 421, 460, 505
PkrI GCNGC 5 cut(s) 250, 289, 538, 592, 595
PleI GAGTC 3 cut(s) 16, 301, 342
PpsI GAGTC 3 cut(s) 16, 301, 342
Ppu21I YACGTR 1 cut(s) 263
Psp6I CCWGG 1 cut(s) 478
PspGI CCWGG 1 cut(s) 478
PspN4I GGNNCC 1 cut(s) 477
PsuI RGATCY 2 cut(s) 153, 200
RsaI GTAC 2 cut(s) 304, 501
RsaNI GTAC 2 cut(s) 303, 500
SaqAI TTAA 3 cut(s) 429, 584, 622
SatI GCNGC 5 cut(s) 249, 288, 537, 591, 594
Sau3AI GATC 3 cut(s) 153, 200, 274
SchI GAGTC 3 cut(s) 17, 301, 343
ScrFI CCNGG 1 cut(s) 480
SfaNI GCATC 2 cut(s) 33, 537
Sse9I AATT 1 cut(s) 388
SsiI CCGC 8 cut(s) 80, 86, 248, 272, 294, 440, 588, 594
SspMI CTAG 1 cut(s) 284
StyD4I CCNGG 1 cut(s) 478
StyI CCWWGG 1 cut(s) 561
TaiI ACGT 3 cut(s) 106, 265, 611
TaqI TCGA 6 cut(s) 27, 49, 174, 277, 398, 556
TaqII GACCGA 2 cut(s) 242, 539
TasI AATT 1 cut(s) 388
TauI GCSGC 2 cut(s) 251, 596
TfiI GAWTC 5 cut(s) 41, 139, 421, 460, 505
Tru1I TTAA 3 cut(s) 429, 584, 622
Tru9I TTAA 3 cut(s) 429, 584, 622
TseI GCWGC 3 cut(s) 287, 536, 590
TspDTI ATGAA 1 cut(s) 531
TspGWI ACGGA 2 cut(s) 428, 616
XspI CTAG 1 cut(s) 284
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.