Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0013101

Physical Location & Seq

Genomic Coordinates Reverse (-)

43035206 .. 43036248

Gene Structure 1043 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00422010.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 222 bp

ATGGCGGCCTCGTTTGTCTCGAACCTCGACCCCTGTCTTGACTCGAGTCGCAAGAAACGTCGAAAAGTCGAGGATGATCGGAATCCGGCTTCAACTACTCAAGTGAGATGGAGATCCGATAAAGAGCAACGGATCTATTCAACTAAGCTGGTGGAGGCGCTACGGAAGGTTCGCCAGGGATCATCATCGTCGCCGGCAGCGGTCTCCGGGGGAAAATCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

73

Amino Acids

8.11

Weight (kDa)

10.42

Isoelectric Point (pI)

71.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0013101)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09250
fragaria_vesca	FvH4_6g07630 FvH4_6g07630
malus_domestica	MD04G1192700.v1.1 MD12G1204600.v1.1
prunus_persica	Prupe.6G311800_v2.0.a1
pyrus_communis	pycom04g17000 pycom12g19250
rosa_chinensis	RchiOBHm_Chr3g0457291
rosa_laevigata	RLG00000025236
rosa_multiflora	Rmu_sc0005442.1_g000012
rosa_roxburghii	Rroxscaffold_6G00422010
rosa_rugosa	Rorug03G0019700
rosa_samantha	Rh3AG079800 Rh3BG081500 Rh3CG081900 Rh3DG083500
rosa_wichuraiana	Rw3G006880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	5, 200
AclWI	GGATC	3 cut(s)	108, 140, 187
AgsI	TTSAA	2 cut(s)	93, 141
AjnI	CCWGG	1 cut(s)	174
AluBI	AGCT	1 cut(s)	148
AluI	AGCT	1 cut(s)	148
Alw26I	GTCTC	2 cut(s)	22, 208
AlwI	GGATC	3 cut(s)	108, 140, 187
Ama87I	CYCGRG	1 cut(s)	43
AoxI	GGCC	1 cut(s)	6
ApeKI	GCWGC	1 cut(s)	197
AspLEI	GCGC	1 cut(s)	160
AsuC2I	CCSGG	1 cut(s)	208
AvaI	CYCGRG	1 cut(s)	43
BbvI	GCAGC	1 cut(s)	209
BccI	CCATC	1 cut(s)	102
BciT130I	CCWGG	1 cut(s)	176
BcnI	CCSGG	1 cut(s)	208
BcoDI	GTCTC	2 cut(s)	22, 208
BfoI	RGCGCY	1 cut(s)	161
BisI	GCNGC	2 cut(s)	6, 198
BlsI	GCNGC	2 cut(s)	7, 199
Bme1390I	CCNGG	2 cut(s)	176, 208
BmeT110I	CYCGRG	1 cut(s)	43
BmrFI	CCNGG	2 cut(s)	176, 208
BoxI	GACNNNNGTC	2 cut(s)	33, 45
BpuEI	CTTGAG	1 cut(s)	84
BpuMI	CCSGG	1 cut(s)	208
BsaBI	GATNNNNATC	3 cut(s)	81, 112, 184
BsaI	GGTCTC	1 cut(s)	208
BsaJI	CCNNGG	2 cut(s)	175, 207
Bse118I	RCCGGY	1 cut(s)	193
Bse8I	GATNNNNATC	3 cut(s)	81, 112, 184
BseBI	CCWGG	1 cut(s)	176
BseDI	CCNNGG	2 cut(s)	175, 207
BseGI	GGATG	1 cut(s)	79
BseJI	GATNNNNATC	3 cut(s)	81, 112, 184
BseXI	GCAGC	1 cut(s)	209
BshFI	GGCC	1 cut(s)	8
BsiHKCI	CYCGRG	1 cut(s)	43
BsiSI	CCGG	3 cut(s)	86, 194, 207
BsmAI	GTCTC	2 cut(s)	22, 208
BsnI	GGCC	1 cut(s)	8
Bso31I	GGTCTC	1 cut(s)	208
BsoBI	CYCGRG	1 cut(s)	43
Bsp143I	GATC	4 cut(s)	76, 113, 132, 179
BspACI	CCGC	2 cut(s)	5, 200
BspANI	GGCC	1 cut(s)	8
BspPI	GGATC	3 cut(s)	108, 140, 187
BspTNI	GGTCTC	1 cut(s)	208
BsrFI	RCCGGY	1 cut(s)	193
BssAI	RCCGGY	1 cut(s)	193
BssECI	CCNNGG	2 cut(s)	175, 207
BssMI	GATC	4 cut(s)	76, 113, 132, 179
Bst2UI	CCWGG	1 cut(s)	176
BstC8I	GCNNGC	1 cut(s)	195
BstDEI	CTNAG	1 cut(s)	144
BstF5I	GGATG	1 cut(s)	79
BstH2I	RGCGCY	1 cut(s)	161
BstHHI	GCGC	1 cut(s)	160
BstKTI	GATC	4 cut(s)	79, 116, 135, 182
BstMAI	GTCTC	2 cut(s)	22, 208
BstMBI	GATC	4 cut(s)	76, 113, 132, 179
BstNI	CCWGG	1 cut(s)	176
BstPAI	GACNNNNGTC	2 cut(s)	33, 45
BstSCI	CCNGG	2 cut(s)	174, 206
BstV1I	GCAGC	1 cut(s)	209
BstX2I	RGATCY	2 cut(s)	113, 132
BstYI	RGATCY	2 cut(s)	113, 132
BsuRI	GGCC	1 cut(s)	8
BtsCI	GGATG	1 cut(s)	79
Cac8I	GCNNGC	1 cut(s)	195
CfoI	GCGC	1 cut(s)	160
Cfr10I	RCCGGY	1 cut(s)	193
CviJI	RGCY	3 cut(s)	8, 89, 148
CviKI_1	RGCY	3 cut(s)	8, 89, 148
DdeI	CTNAG	1 cut(s)	144
DpnI	GATC	4 cut(s)	78, 115, 134, 181
DpnII	GATC	4 cut(s)	76, 113, 132, 179
Eco31I	GGTCTC	1 cut(s)	208
Eco88I	CYCGRG	1 cut(s)	43
EcoRII	CCWGG	1 cut(s)	174
Fnu4HI	GCNGC	2 cut(s)	6, 198
FokI	GGATG	1 cut(s)	86
Fsp4HI	GCNGC	2 cut(s)	6, 198
GlaI	GCGC	1 cut(s)	159
GluI	GCNGC	2 cut(s)	6, 198
HaeII	RGCGCY	1 cut(s)	161
HaeIII	GGCC	1 cut(s)	8
HapII	CCGG	3 cut(s)	86, 194, 207
HhaI	GCGC	1 cut(s)	160
Hin6I	GCGC	1 cut(s)	158
HinP1I	GCGC	1 cut(s)	158
HinfI	GANTC	3 cut(s)	41, 46, 82
HpaII	CCGG	3 cut(s)	86, 194, 207
Hpy188I	TCNGA	2 cut(s)	81, 118
Hpy188III	TCNNGA	3 cut(s)	19, 38, 219
Hpy99I	CGWCG	2 cut(s)	63, 193
HpyAV	CCTTC	1 cut(s)	160
HpyCH4IV	ACGT	1 cut(s)	58
HpyF3I	CTNAG	1 cut(s)	144
HpySE526I	ACGT	1 cut(s)	58
HspAI	GCGC	1 cut(s)	158
KroI	GCCGGC	1 cut(s)	193
KroNI	GCCGGC	1 cut(s)	195
Kzo9I	GATC	4 cut(s)	76, 113, 132, 179
LpnPI	CCDG	6 cut(s)	46, 99, 134, 161, 188, 207
Lsp1109I	GCAGC	1 cut(s)	209
MaeII	ACGT	1 cut(s)	58
MalI	GATC	4 cut(s)	78, 115, 134, 181
MboI	GATC	4 cut(s)	76, 113, 132, 179
MflI	RGATCY	2 cut(s)	113, 132
MlyI	GAGTC	2 cut(s)	35, 55
MnlI	CCTC	4 cut(s)	19, 35, 64, 148
MroNI	GCCGGC	1 cut(s)	193
MspA1I	CMGCKG	1 cut(s)	200
MspI	CCGG	3 cut(s)	86, 194, 207
MspR9I	CCNGG	2 cut(s)	176, 208
MvaI	CCWGG	1 cut(s)	176
NaeI	GCCGGC	1 cut(s)	195
NciI	CCSGG	1 cut(s)	208
NdeII	GATC	4 cut(s)	76, 113, 132, 179
NgoMIV	GCCGGC	1 cut(s)	193
PaeR7I	CTCGAG	1 cut(s)	43
PcsI	WCGNNNNNNNCGW	2 cut(s)	17, 55
PdiI	GCCGGC	1 cut(s)	195
PfeI	GAWTC	1 cut(s)	82
PkrI	GCNGC	2 cut(s)	7, 199
PleI	GAGTC	2 cut(s)	35, 54
PpsI	GAGTC	2 cut(s)	35, 54
PshAI	GACNNNNGTC	2 cut(s)	33, 45
Psp6I	CCWGG	1 cut(s)	174
PspGI	CCWGG	1 cut(s)	174
PspXI	VCTCGAGB	1 cut(s)	43
PsuI	RGATCY	2 cut(s)	113, 132
SatI	GCNGC	2 cut(s)	6, 198
Sau3AI	GATC	4 cut(s)	76, 113, 132, 179
SchI	GAGTC	2 cut(s)	35, 55
ScrFI	CCNGG	2 cut(s)	176, 208
SetI	ASST	4 cut(s)	27, 61, 150, 171
Sfr274I	CTCGAG	1 cut(s)	43
SlaI	CTCGAG	1 cut(s)	43
SmlI	CTYRAG	2 cut(s)	43, 99
SmoI	CTYRAG	2 cut(s)	43, 99
SsiI	CCGC	2 cut(s)	5, 200
StyD4I	CCNGG	2 cut(s)	174, 206
TaiI	ACGT	1 cut(s)	61
TaqI	TCGA	5 cut(s)	20, 27, 44, 61, 69
TauI	GCSGC	1 cut(s)	8
TfiI	GAWTC	1 cut(s)	82
TseI	GCWGC	1 cut(s)	197
TspGWI	ACGGA	2 cut(s)	145, 178
XhoI	CTCGAG	1 cut(s)	43

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.