Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005442.1

Orthogroup ID

OG0013101

Physical Location & Seq

Genomic Coordinates Reverse (-)

45270 .. 46076

Gene Structure 807 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005442.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 672 bp

ctgaaccacttttttctttgctccttcaaggcttcagagtttttgtatctgttgaattgcacattcggatacgcagctttcatggcggcctcgtttgtctcgaaccccgacccctgtcttgactcgagtcgcaagaaacgtcgaaaagtcgaggatgatcggaatccggcttcaactactcaagcgagatggagatccgataaagagcaacggatctattcaactaagctggtggaggcgctccggaaggttcgccagggatcatcatcgtcgccggtagcggtctccggggggaaaatcgtgaaggaagcagccgacagggttctggccgtggcggcgaaaggtacgactcggtggagcagagcgattctgaggagtcgactcaggctgagcaagaggcttcagaagtgtagaaaggcgagggttaccggggatagcaggtgtaagagggcggacgtgaggagagagaggaggaggacgccggctgtgcagaagaaagttaaggttcttagccagttggttcccggttgccggaaggctccgttgccgaaccttctagaagaaacgaccgattacatagcggcgctggagatgcaggttcgagctatgacggttctgacggagcttctctccggtgctccggcggccaatcgtctcaactttaccagttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

223

Amino Acids

25.06

Weight (kDa)

10.74

Isoelectric Point (pI)

56.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013101)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09250
fragaria_vesca	FvH4_6g07630 FvH4_6g07630
malus_domestica	MD04G1192700.v1.1 MD12G1204600.v1.1
prunus_persica	Prupe.6G311800_v2.0.a1
pyrus_communis	pycom04g17000 pycom12g19250
rosa_chinensis	RchiOBHm_Chr3g0457291
rosa_laevigata	RLG00000025236
rosa_multiflora	Rmu_sc0005442.1_g000012
rosa_roxburghii	Rroxscaffold_6G00422010
rosa_rugosa	Rorug03G0019700
rosa_samantha	Rh3AG079800 Rh3BG081500 Rh3CG081900 Rh3DG083500
rosa_wichuraiana	Rw3G006880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	429
Acc36I	ACCTGC	2 cut(s)	429, 586
AccI	GTMKAC	1 cut(s)	379
AccIII	TCCGGA	1 cut(s)	243
AciI	CCGC	6 cut(s)	86, 281, 335, 452, 581, 644
AclWI	GGATC	3 cut(s)	189, 221, 268
AcoI	YGGCCR	2 cut(s)	327, 645
AcuI	CTGAAG	2 cut(s)	18, 386
AcyI	GRCGYC	1 cut(s)	479
AfaI	GTAC	1 cut(s)	346
AfiI	CCNNNNNNNGG	1 cut(s)	531
AgsI	TTSAA	4 cut(s)	28, 55, 174, 222
AjiI	CACGTC	1 cut(s)	457
AjnI	CCWGG	1 cut(s)	255
AluBI	AGCT	4 cut(s)	77, 229, 605, 625
AluI	AGCT	4 cut(s)	77, 229, 605, 625
Alw21I	GWGCWC	1 cut(s)	640
Alw26I	GTCTC	3 cut(s)	103, 289, 659
AlwI	GGATC	3 cut(s)	189, 221, 268
Ama87I	CYCGRG	1 cut(s)	124
Aor13HI	TCCGGA	1 cut(s)	243
AoxI	GGCC	3 cut(s)	87, 327, 645
ApeKI	GCWGC	2 cut(s)	74, 311
AspLEI	GCGC	2 cut(s)	241, 586
AsuC2I	CCSGG	3 cut(s)	289, 430, 525
AvaI	CYCGRG	1 cut(s)	124
Bbv12I	GWGCWC	1 cut(s)	640
BbvI	GCAGC	2 cut(s)	86, 323
BccI	CCATC	1 cut(s)	183
BceAI	ACGGC	1 cut(s)	314
BciT130I	CCWGG	1 cut(s)	257
BciVI	GTATCC	1 cut(s)	62
BcnI	CCSGG	3 cut(s)	289, 430, 525
BcoDI	GTCTC	3 cut(s)	103, 289, 659
BfaI	CTAG	1 cut(s)	557
BfoI	RGCGCY	2 cut(s)	242, 587
BfuAI	ACCTGC	2 cut(s)	429, 586
BfuI	GTATCC	1 cut(s)	62
BglI	GCCNNNNNGGC	1 cut(s)	335
BisI	GCNGC	6 cut(s)	75, 87, 312, 336, 582, 645
BlpI	GCTNAGC	1 cut(s)	389
BlsI	GCNGC	6 cut(s)	76, 88, 313, 337, 583, 646
Bme1390I	CCNGG	4 cut(s)	257, 289, 430, 525
BmeT110I	CYCGRG	1 cut(s)	124
BmgBI	CACGTC	1 cut(s)	457
BmiI	GGNNCC	2 cut(s)	522, 540
BmrFI	CCNGG	4 cut(s)	257, 289, 430, 525
BmsI	GCATC	1 cut(s)	582
BoxI	GACNNNNGTC	2 cut(s)	114, 126
BplI	GAGNNNNNCTC	2 cut(s)	614, 646
BpmI	CTGGAG	1 cut(s)	608
Bpu1102I	GCTNAGC	1 cut(s)	389
BpuEI	CTTGAG	1 cut(s)	165
BpuMI	CCSGG	3 cut(s)	289, 430, 525
BsaBI	GATNNNNATC	3 cut(s)	162, 193, 265
BsaHI	GRCGYC	1 cut(s)	479
BsaI	GGTCTC	1 cut(s)	289
BsaJI	CCNNGG	4 cut(s)	256, 288, 330, 429
BsaWI	WCCGGW	2 cut(s)	243, 632
Bsc4I	CCNNNNNNNGG	1 cut(s)	531
Bse118I	RCCGGY	2 cut(s)	274, 481
Bse1I	ACTGG	2 cut(s)	514, 666
Bse8I	GATNNNNATC	3 cut(s)	162, 193, 265
BseAI	TCCGGA	1 cut(s)	243
BseBI	CCWGG	1 cut(s)	257
BseDI	CCNNGG	4 cut(s)	256, 288, 330, 429
BseGI	GGATG	1 cut(s)	160
BseJI	GATNNNNATC	3 cut(s)	162, 193, 265
BseLI	CCNNNNNNNGG	1 cut(s)	531
BseMII	CTCAG	3 cut(s)	362, 380, 397
BseNI	ACTGG	2 cut(s)	514, 666
BseRI	GAGGAG	4 cut(s)	388, 475, 484, 487
BseXI	GCAGC	2 cut(s)	86, 323
BsgI	GTGCAG	1 cut(s)	509
Bsh1285I	CGRYCG	1 cut(s)	570
BshFI	GGCC	3 cut(s)	89, 329, 647
BsiEI	CGRYCG	1 cut(s)	570
BsiHKAI	GWGCWC	1 cut(s)	640
BsiHKCI	CYCGRG	1 cut(s)	124
BslI	CCNNNNNNNGG	1 cut(s)	531
BsmAI	GTCTC	3 cut(s)	103, 289, 659
BsmBI	CGTCTC	1 cut(s)	659
BsnI	GGCC	3 cut(s)	89, 329, 647
Bso31I	GGTCTC	1 cut(s)	289
BsoBI	CYCGRG	1 cut(s)	124
Bsp1286I	GDGCHC	1 cut(s)	640
Bsp13I	TCCGGA	1 cut(s)	243
Bsp143I	GATC	4 cut(s)	157, 194, 213, 260
Bsp1720I	GCTNAGC	1 cut(s)	389
BspACI	CCGC	6 cut(s)	86, 281, 335, 452, 581, 644
BspANI	GGCC	3 cut(s)	89, 329, 647
BspCNI	CTCAG	3 cut(s)	363, 381, 396
BspEI	TCCGGA	1 cut(s)	243
BspLI	GGNNCC	2 cut(s)	522, 540
BspMI	ACCTGC	2 cut(s)	429, 586
BspPI	GGATC	3 cut(s)	189, 221, 268
BspTNI	GGTCTC	1 cut(s)	289
BsrFI	RCCGGY	2 cut(s)	274, 481
BsrI	ACTGG	2 cut(s)	514, 666
BssAI	RCCGGY	2 cut(s)	274, 481
BssECI	CCNNGG	4 cut(s)	256, 288, 330, 429
BssMI	GATC	4 cut(s)	157, 194, 213, 260
BssNI	GRCGYC	1 cut(s)	479
Bst2UI	CCWGG	1 cut(s)	257
Bst4CI	ACNGT	1 cut(s)	613
BstACI	GRCGYC	1 cut(s)	479
BstC8I	GCNNGC	1 cut(s)	483
BstDEI	CTNAG	5 cut(s)	225, 371, 383, 389, 509
BstDSI	CCRYGG	1 cut(s)	330
BstEII	GGTNACC	1 cut(s)	424
BstF5I	GGATG	1 cut(s)	160
BstH2I	RGCGCY	2 cut(s)	242, 587
BstHHI	GCGC	2 cut(s)	241, 586
BstKTI	GATC	4 cut(s)	160, 197, 216, 263
BstMAI	GTCTC	3 cut(s)	103, 289, 659
BstMBI	GATC	4 cut(s)	157, 194, 213, 260
BstMCI	CGRYCG	1 cut(s)	570
BstMWI	GCNNNNNNNGC	5 cut(s)	83, 335, 487, 592, 644
BstNI	CCWGG	1 cut(s)	257
BstPAI	GACNNNNGTC	2 cut(s)	114, 126
BstPI	GGTNACC	1 cut(s)	424
BstSCI	CCNGG	4 cut(s)	255, 287, 428, 523
BstV1I	GCAGC	2 cut(s)	86, 323
BstX2I	RGATCY	2 cut(s)	194, 213
BstYI	RGATCY	2 cut(s)	194, 213
BsuI	GTATCC	1 cut(s)	62
BsuRI	GGCC	3 cut(s)	89, 329, 647
BtgI	CCRYGG	1 cut(s)	330
BtrI	CACGTC	1 cut(s)	457
BtsCI	GGATG	1 cut(s)	160
BveI	ACCTGC	2 cut(s)	429, 586
Cac8I	GCNNGC	1 cut(s)	483
CfoI	GCGC	2 cut(s)	241, 586
Cfr10I	RCCGGY	2 cut(s)	274, 481
CseI	GACGC	1 cut(s)	487
Csp6I	GTAC	1 cut(s)	345
CviAII	CATG	1 cut(s)	82
CviQI	GTAC	1 cut(s)	345
DdeI	CTNAG	5 cut(s)	225, 371, 383, 389, 509
DpnI	GATC	4 cut(s)	159, 196, 215, 262
DpnII	GATC	4 cut(s)	157, 194, 213, 260
EaeI	YGGCCR	2 cut(s)	327, 645
EciI	GGCGGA	1 cut(s)	467
Eco31I	GGTCTC	1 cut(s)	289
Eco57I	CTGAAG	2 cut(s)	18, 386
Eco88I	CYCGRG	1 cut(s)	124
Eco91I	GGTNACC	1 cut(s)	424
EcoO65I	GGTNACC	1 cut(s)	424
EcoRII	CCWGG	1 cut(s)	255
Esp3I	CGTCTC	1 cut(s)	659
FaeI	CATG	1 cut(s)	85
FaiI	YATR	3 cut(s)	83, 578, 608
FatI	CATG	1 cut(s)	81
FblI	GTMKAC	1 cut(s)	379
Fnu4HI	GCNGC	6 cut(s)	75, 87, 312, 336, 582, 645
FokI	GGATG	1 cut(s)	167
Fsp4HI	GCNGC	6 cut(s)	75, 87, 312, 336, 582, 645
FspBI	CTAG	1 cut(s)	557
GlaI	GCGC	2 cut(s)	240, 585
GluI	GCNGC	6 cut(s)	75, 87, 312, 336, 582, 645
GsuI	CTGGAG	1 cut(s)	608
HaeII	RGCGCY	2 cut(s)	242, 587
HaeIII	GGCC	3 cut(s)	89, 329, 647
HgaI	GACGC	1 cut(s)	487
HhaI	GCGC	2 cut(s)	241, 586
Hin1I	GRCGYC	1 cut(s)	479
Hin1II	CATG	1 cut(s)	85
Hin6I	GCGC	2 cut(s)	239, 584
HinP1I	GCGC	2 cut(s)	239, 584
HincII	GTYRAC	1 cut(s)	380
HindII	GTYRAC	1 cut(s)	380
HinfI	GANTC	7 cut(s)	122, 127, 163, 349, 367, 376, 381
Hpy166II	GTNNAC	1 cut(s)	380
Hpy188I	TCNGA	7 cut(s)	37, 68, 162, 199, 372, 405, 618
Hpy188III	TCNNGA	5 cut(s)	100, 119, 244, 301, 557
Hpy8I	GTNNAC	1 cut(s)	380
Hpy99I	CGWCG	2 cut(s)	144, 274
HpyAV	CCTTC	5 cut(s)	34, 241, 298, 529, 563
HpyCH4III	ACNGT	1 cut(s)	613
HpyCH4IV	ACGT	2 cut(s)	139, 456
HpyCH4V	TGCA	3 cut(s)	60, 490, 595
HpyF10VI	GCNNNNNNNGC	5 cut(s)	83, 335, 487, 592, 644
HpyF3I	CTNAG	5 cut(s)	225, 371, 383, 389, 509
HpySE526I	ACGT	2 cut(s)	139, 456
Hsp92I	GRCGYC	1 cut(s)	479
Hsp92II	CATG	1 cut(s)	85
HspAI	GCGC	2 cut(s)	239, 584
Kpn2I	TCCGGA	1 cut(s)	243
KroI	GCCGGC	1 cut(s)	481
KroNI	GCCGGC	1 cut(s)	483
Kzo9I	GATC	4 cut(s)	157, 194, 213, 260
LmnI	GCTCC	6 cut(s)	26, 246, 357, 544, 622, 643
Lsp1109I	GCAGC	2 cut(s)	86, 323
LweI	GCATC	1 cut(s)	582
MaeI	CTAG	1 cut(s)	557
MaeII	ACGT	2 cut(s)	139, 456
MaeIII	GTNAC	1 cut(s)	424
MalI	GATC	4 cut(s)	159, 196, 215, 262
MboI	GATC	4 cut(s)	157, 194, 213, 260
MboII	GAAGA	2 cut(s)	505, 572
MflI	RGATCY	2 cut(s)	194, 213
MhlI	GDGCHC	1 cut(s)	640
MluCI	AATT	1 cut(s)	55
MlyI	GAGTC	5 cut(s)	116, 136, 343, 375, 385
MroI	TCCGGA	1 cut(s)	243
MroNI	GCCGGC	1 cut(s)	481
MseI	TTAA	1 cut(s)	501
MspR9I	CCNGG	4 cut(s)	257, 289, 430, 525
MvaI	CCWGG	1 cut(s)	257
MwoI	GCNNNNNNNGC	5 cut(s)	83, 335, 487, 592, 644
NaeI	GCCGGC	1 cut(s)	483
NciI	CCSGG	3 cut(s)	289, 430, 525
NdeII	GATC	4 cut(s)	157, 194, 213, 260
NgoMIV	GCCGGC	1 cut(s)	481
NlaIII	CATG	1 cut(s)	85
NlaIV	GGNNCC	2 cut(s)	522, 540
PaeR7I	CTCGAG	1 cut(s)	124
PaqCI	CACCTGC	1 cut(s)	429
PcsI	WCGNNNNNNNCGW	2 cut(s)	98, 136
PdiI	GCCGGC	1 cut(s)	483
PfeI	GAWTC	2 cut(s)	163, 367
PkrI	GCNGC	6 cut(s)	76, 88, 313, 337, 583, 646
PleI	GAGTC	5 cut(s)	116, 135, 343, 375, 384
PpsI	GAGTC	5 cut(s)	116, 135, 343, 375, 384
PshAI	GACNNNNGTC	2 cut(s)	114, 126
Psp6I	CCWGG	1 cut(s)	255
PspEI	GGTNACC	1 cut(s)	424
PspGI	CCWGG	1 cut(s)	255
PspN4I	GGNNCC	2 cut(s)	522, 540
PspXI	VCTCGAGB	1 cut(s)	124
PsuI	RGATCY	2 cut(s)	194, 213
RsaI	GTAC	1 cut(s)	346
RsaNI	GTAC	1 cut(s)	345
SalI	GTCGAC	1 cut(s)	378
SaqAI	TTAA	1 cut(s)	501
SatI	GCNGC	6 cut(s)	75, 87, 312, 336, 582, 645
Sau3AI	GATC	4 cut(s)	157, 194, 213, 260
SchI	GAGTC	5 cut(s)	116, 136, 343, 375, 385
ScrFI	CCNGG	4 cut(s)	257, 289, 430, 525
SduI	GDGCHC	1 cut(s)	640
SfaNI	GCATC	1 cut(s)	582
Sfr274I	CTCGAG	1 cut(s)	124
SlaI	CTCGAG	1 cut(s)	124
SmlI	CTYRAG	2 cut(s)	124, 180
SmoI	CTYRAG	2 cut(s)	124, 180
Sse9I	AATT	1 cut(s)	55
SsiI	CCGC	6 cut(s)	86, 281, 335, 452, 581, 644
SspMI	CTAG	1 cut(s)	557
StyD4I	CCNGG	4 cut(s)	255, 287, 428, 523
TaaI	ACNGT	1 cut(s)	613
TaiI	ACGT	2 cut(s)	142, 459
TaqI	TCGA	6 cut(s)	101, 125, 142, 150, 379, 601
TaqII	GACCGA	1 cut(s)	584
TasI	AATT	1 cut(s)	55
TauI	GCSGC	4 cut(s)	89, 338, 584, 647
TfiI	GAWTC	2 cut(s)	163, 367
Tru1I	TTAA	1 cut(s)	501
Tru9I	TTAA	1 cut(s)	501
TseI	GCWGC	2 cut(s)	74, 311
TspDTI	ATGAA	1 cut(s)	70
TspGWI	ACGGA	3 cut(s)	226, 531, 635
XbaI	TCTAGA	1 cut(s)	556
XhoI	CTCGAG	1 cut(s)	124
XmiI	GTMKAC	1 cut(s)	379
XspI	CTAG	1 cut(s)	557

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.