FvH4_6g07630

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0013101
Physical Location & Seq
Forward (+)
4574478 .. 4575672
1195 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g07630.t2

Sequence Viewer

Length: 591 bp
ATGGCGCCCTCGTTTGTCTCGAACCCCGACGCCAGTCTTGACTCGAGTCGCAAGAAACGTCGAAAGCTCAAGGATGATCAGAACCCTTCTGCAACTACTCAATTGAGATGGAGATCCGATAACGAGCAACGGATCTATTCAACTAAGCTGGTCGAGGCTCTCCAGAAGGTTCGCCAGGGACCATCCTCATCGCCGACGGCTGCCGTCTCCGGCGGGAAAACAGTGAAGGAAGCAGCTGACAGGGTTCTGGCCTTGGCGGCGAGAGGCACGACCCGGTGGAGCAGAGCGATTCTGACGAGTCGACTCAGGATGAGAAAGAGGCTTCAGAAGCGTAAGAAGGCGACGGTGAGCGGGAATAGCCGGTGTAGGAGGGCGGAGGTGAGGAGGATGAGGATGCCGGCTGTGCAGAGGAAAGTTAAGATTCTTAGCCGGTTGGTTCCCGGTTGCCGGAAGGCTCCGTTTCCGAACCTTCTAGAAGAAACAACCGATTACATAGCGGCGCTGCAGATGCAGGTTCGAGCTATGACGGTTCTGACGGAACTTCTTTCCGGTGCTCCTCCGGCGGCTAGTCGTCTCAACTCCGCGAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

197

Amino Acids

21.83

Weight (kDa)

11.65

Isoelectric Point (pI)

64.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
IBH1_N PF26576 41 - 101 6.5e-12 IBH1-like, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013101)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G09250
fragaria_vesca FvH4_6g07630 FvH4_6g07630
malus_domestica MD04G1192700.v1.1 MD12G1204600.v1.1
prunus_persica Prupe.6G311800_v2.0.a1
pyrus_communis pycom04g17000 pycom12g19250
rosa_chinensis RchiOBHm_Chr3g0457291
rosa_laevigata RLG00000025236
rosa_multiflora Rmu_sc0005442.1_g000012
rosa_roxburghii Rroxscaffold_6G00422010
rosa_rugosa Rorug03G0019700
rosa_samantha Rh3AG079800 Rh3BG081500 Rh3CG081900 Rh3DG083500
rosa_wichuraiana Rw3G006880

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 502
AccB1I GGYRCC 1 cut(s) 4
AccBSI CCGCTC 1 cut(s) 351
AccI GTMKAC 1 cut(s) 301
AccII CGCG 1 cut(s) 584
AciI CCGC 7 cut(s) 213, 257, 351, 374, 497, 563, 582
AclWI GGATC 2 cut(s) 108, 140
AcuI CTGAAG 1 cut(s) 308
AcyI GRCGYC 2 cut(s) 5, 30
AfiI CCNNNNNNNGG 1 cut(s) 447
AgsI TTSAA 1 cut(s) 141
AjnI CCWGG 1 cut(s) 174
AluBI AGCT 4 cut(s) 67, 148, 236, 521
AluI AGCT 4 cut(s) 67, 148, 236, 521
Alw21I GWGCWC 1 cut(s) 556
Alw26I GTCTC 3 cut(s) 22, 211, 578
AlwI GGATC 2 cut(s) 108, 140
Ama87I CYCGRG 1 cut(s) 43
AoxI GGCC 1 cut(s) 249
ApeKI GCWGC 3 cut(s) 200, 233, 502
AspLEI GCGC 2 cut(s) 7, 502
AspS9I GGNCC 1 cut(s) 179
AsuC2I CCSGG 2 cut(s) 274, 441
AsuHPI GGTGA 2 cut(s) 358, 391
AvaI CYCGRG 1 cut(s) 43
AvaII GGWCC 1 cut(s) 179
BanI GGYRCC 1 cut(s) 4
Bbv12I GWGCWC 1 cut(s) 556
BbvI GCAGC 3 cut(s) 187, 245, 489
BccI CCATC 2 cut(s) 102, 190
BceAI ACGGC 2 cut(s) 188, 213
BciT130I CCWGG 1 cut(s) 176
BclI TGATCA 1 cut(s) 76
BcnI CCSGG 2 cut(s) 274, 441
BcoDI GTCTC 3 cut(s) 22, 211, 578
BfaI CTAG 2 cut(s) 473, 567
BfmI CTRYAG 1 cut(s) 503
BfoI RGCGCY 2 cut(s) 8, 503
BfuAI ACCTGC 1 cut(s) 502
BglI GCCNNNNNGGC 1 cut(s) 257
BisI GCNGC 6 cut(s) 201, 234, 258, 498, 503, 564
BlsI GCNGC 6 cut(s) 202, 235, 259, 499, 504, 565
Bme1390I CCNGG 3 cut(s) 176, 274, 441
Bme18I GGWCC 1 cut(s) 179
BmeT110I CYCGRG 1 cut(s) 43
BmgT120I GGNCC 1 cut(s) 179
BmiI GGNNCC 4 cut(s) 6, 180, 438, 456
BmrFI CCNGG 3 cut(s) 176, 274, 441
BmsI GCATC 2 cut(s) 384, 498
BoxI GACNNNNGTC 2 cut(s) 33, 45
BpmI CTGGAG 1 cut(s) 146
BpuEI CTTGAG 1 cut(s) 53
BpuMI CCSGG 2 cut(s) 274, 441
BsaBI GATNNNNATC 1 cut(s) 112
BsaHI GRCGYC 2 cut(s) 5, 30
BsaJI CCNNGG 2 cut(s) 175, 252
BsaWI WCCGGW 1 cut(s) 548
Bsc4I CCNNNNNNNGG 1 cut(s) 447
Bse118I RCCGGY 3 cut(s) 360, 397, 429
Bse1I ACTGG 1 cut(s) 33
Bse8I GATNNNNATC 1 cut(s) 112
BseBI CCWGG 1 cut(s) 176
BseDI CCNNGG 2 cut(s) 175, 252
BseGI GGATG 5 cut(s) 79, 182, 315, 393, 399
BseJI GATNNNNATC 1 cut(s) 112
BseLI CCNNNNNNNGG 1 cut(s) 447
BseMII CTCAG 1 cut(s) 319
BseNI ACTGG 1 cut(s) 33
BseRI GAGGAG 2 cut(s) 397, 546
BseXI GCAGC 3 cut(s) 187, 245, 489
BsgI GTGCAG 1 cut(s) 425
Bsh1236I CGCG 1 cut(s) 584
BshFI GGCC 1 cut(s) 251
BshNI GGYRCC 1 cut(s) 4
BsiHKAI GWGCWC 1 cut(s) 556
BsiHKCI CYCGRG 1 cut(s) 43
BsiSI CCGG 9 cut(s) 210, 274, 361, 398, 430, 441, 448, 549, 560
BslFI GGGAC 1 cut(s) 192
BslI CCNNNNNNNGG 1 cut(s) 447
BsmAI GTCTC 3 cut(s) 22, 211, 578
BsmBI CGTCTC 2 cut(s) 211, 578
BsmFI GGGAC 1 cut(s) 192
BsnI GGCC 1 cut(s) 251
BsoBI CYCGRG 1 cut(s) 43
Bsp1286I GDGCHC 1 cut(s) 556
Bsp143I GATC 3 cut(s) 76, 113, 132
BspACI CCGC 7 cut(s) 213, 257, 351, 374, 497, 563, 582
BspANI GGCC 1 cut(s) 251
BspCNI CTCAG 1 cut(s) 318
BspFNI CGCG 1 cut(s) 584
BspLI GGNNCC 4 cut(s) 6, 180, 438, 456
BspMAI CTGCAG 1 cut(s) 507
BspMI ACCTGC 1 cut(s) 502
BspPI GGATC 2 cut(s) 108, 140
BspT107I GGYRCC 1 cut(s) 4
BsrBI CCGCTC 1 cut(s) 351
BsrFI RCCGGY 3 cut(s) 360, 397, 429
BsrI ACTGG 1 cut(s) 33
BssAI RCCGGY 3 cut(s) 360, 397, 429
BssECI CCNNGG 2 cut(s) 175, 252
BssMI GATC 3 cut(s) 76, 113, 132
BssNI GRCGYC 2 cut(s) 5, 30
BssT1I CCWWGG 1 cut(s) 252
Bst2UI CCWGG 1 cut(s) 176
Bst4CI ACNGT 3 cut(s) 223, 346, 529
BstACI GRCGYC 2 cut(s) 5, 30
BstC8I GCNNGC 1 cut(s) 399
BstDEI CTNAG 3 cut(s) 144, 305, 425
BstF5I GGATG 5 cut(s) 79, 182, 315, 393, 399
BstFNI CGCG 1 cut(s) 584
BstH2I RGCGCY 2 cut(s) 8, 503
BstHHI GCGC 2 cut(s) 7, 502
BstKTI GATC 3 cut(s) 79, 116, 135
BstMAI GTCTC 3 cut(s) 22, 211, 578
BstMBI GATC 3 cut(s) 76, 113, 132
BstMWI GCNNNNNNNGC 6 cut(s) 257, 328, 357, 403, 508, 560
BstNI CCWGG 1 cut(s) 176
BstPAI GACNNNNGTC 2 cut(s) 33, 45
BstSCI CCNGG 3 cut(s) 174, 272, 439
BstSFI CTRYAG 1 cut(s) 503
BstUI CGCG 1 cut(s) 584
BstV1I GCAGC 3 cut(s) 187, 245, 489
BstX2I RGATCY 2 cut(s) 113, 132
BstYI RGATCY 2 cut(s) 113, 132
BsuRI GGCC 1 cut(s) 251
BtgZI GCGATG 1 cut(s) 174
BtsCI GGATG 5 cut(s) 79, 182, 315, 393, 399
BtsIMutI CAGTG 1 cut(s) 228
BveI ACCTGC 1 cut(s) 502
Cac8I GCNNGC 1 cut(s) 399
CfoI GCGC 2 cut(s) 7, 502
Cfr10I RCCGGY 3 cut(s) 360, 397, 429
Cfr13I GGNCC 1 cut(s) 179
CseI GACGC 1 cut(s) 38
DdeI CTNAG 3 cut(s) 144, 305, 425
DinI GGCGCC 1 cut(s) 6
DpnI GATC 3 cut(s) 78, 115, 134
DpnII GATC 3 cut(s) 76, 113, 132
EciI GGCGGA 1 cut(s) 389
Eco130I CCWWGG 1 cut(s) 252
Eco47I GGWCC 1 cut(s) 179
Eco57I CTGAAG 1 cut(s) 308
Eco88I CYCGRG 1 cut(s) 43
EcoRII CCWGG 1 cut(s) 174
EcoT14I CCWWGG 1 cut(s) 252
EgeI GGCGCC 1 cut(s) 6
EheI GGCGCC 1 cut(s) 6
ErhI CCWWGG 1 cut(s) 252
Esp3I CGTCTC 2 cut(s) 211, 578
FaiI YATR 2 cut(s) 494, 524
FaqI GGGAC 1 cut(s) 192
FauI CCCGC 2 cut(s) 206, 344
FbaI TGATCA 1 cut(s) 76
FblI GTMKAC 1 cut(s) 301
Fnu4HI GCNGC 6 cut(s) 201, 234, 258, 498, 503, 564
FokI GGATG 5 cut(s) 86, 169, 322, 400, 406
Fsp4HI GCNGC 6 cut(s) 201, 234, 258, 498, 503, 564
FspBI CTAG 2 cut(s) 473, 567
GlaI GCGC 2 cut(s) 6, 501
GluI GCNGC 6 cut(s) 201, 234, 258, 498, 503, 564
GsuI CTGGAG 1 cut(s) 146
HaeII RGCGCY 2 cut(s) 8, 503
HaeIII GGCC 1 cut(s) 251
HapII CCGG 9 cut(s) 210, 274, 361, 398, 430, 441, 448, 549, 560
HgaI GACGC 1 cut(s) 38
HhaI GCGC 2 cut(s) 7, 502
Hin1I GRCGYC 2 cut(s) 5, 30
Hin6I GCGC 2 cut(s) 5, 500
HinP1I GCGC 2 cut(s) 5, 500
HincII GTYRAC 1 cut(s) 302
HindII GTYRAC 1 cut(s) 302
HinfI GANTC 6 cut(s) 41, 46, 289, 298, 303, 421
HpaII CCGG 9 cut(s) 210, 274, 361, 398, 430, 441, 448, 549, 560
HphI GGTGA 2 cut(s) 358, 391
Hpy166II GTNNAC 1 cut(s) 302
Hpy188I TCNGA 6 cut(s) 81, 118, 294, 327, 465, 534
Hpy188III TCNNGA 5 cut(s) 19, 38, 163, 307, 473
Hpy8I GTNNAC 1 cut(s) 302
Hpy99I CGWCG 4 cut(s) 32, 63, 199, 346
HpyAV CCTTC 6 cut(s) 96, 160, 220, 331, 445, 479
HpyCH4III ACNGT 3 cut(s) 223, 346, 529
HpyCH4IV ACGT 1 cut(s) 58
HpyCH4V TGCA 4 cut(s) 92, 406, 505, 511
HpyF10VI GCNNNNNNNGC 6 cut(s) 257, 328, 357, 403, 508, 560
HpyF3I CTNAG 3 cut(s) 144, 305, 425
HpySE526I ACGT 1 cut(s) 58
Hsp92I GRCGYC 2 cut(s) 5, 30
HspAI GCGC 2 cut(s) 5, 500
KasI GGCGCC 1 cut(s) 4
KroI GCCGGC 1 cut(s) 397
KroNI GCCGGC 1 cut(s) 399
Ksp22I TGATCA 1 cut(s) 76
Kzo9I GATC 3 cut(s) 76, 113, 132
LmnI GCTCC 3 cut(s) 279, 460, 559
Lsp1109I GCAGC 3 cut(s) 187, 245, 489
LweI GCATC 2 cut(s) 384, 498
MaeI CTAG 2 cut(s) 473, 567
MaeII ACGT 1 cut(s) 58
MalI GATC 3 cut(s) 78, 115, 134
MbiI CCGCTC 1 cut(s) 351
MboI GATC 3 cut(s) 76, 113, 132
MboII GAAGA 1 cut(s) 488
MfeI CAATTG 1 cut(s) 101
MflI RGATCY 2 cut(s) 113, 132
MhlI GDGCHC 1 cut(s) 556
MluCI AATT 1 cut(s) 101
Mly113I GGCGCC 1 cut(s) 5
MlyI GAGTC 4 cut(s) 35, 55, 297, 307
MroNI GCCGGC 1 cut(s) 397
MseI TTAA 1 cut(s) 417
MspA1I CMGCKG 1 cut(s) 236
MspI CCGG 9 cut(s) 210, 274, 361, 398, 430, 441, 448, 549, 560
MspR9I CCNGG 3 cut(s) 176, 274, 441
MunI CAATTG 1 cut(s) 101
MvaI CCWGG 1 cut(s) 176
MvnI CGCG 1 cut(s) 584
MwoI GCNNNNNNNGC 6 cut(s) 257, 328, 357, 403, 508, 560
NaeI GCCGGC 1 cut(s) 399
NarI GGCGCC 1 cut(s) 5
NciI CCSGG 2 cut(s) 274, 441
NdeII GATC 3 cut(s) 76, 113, 132
NgoMIV GCCGGC 1 cut(s) 397
NlaIV GGNNCC 4 cut(s) 6, 180, 438, 456
PaeR7I CTCGAG 1 cut(s) 43
PcsI WCGNNNNNNNCGW 2 cut(s) 17, 55
PdiI GCCGGC 1 cut(s) 399
PfeI GAWTC 2 cut(s) 289, 421
PkrI GCNGC 6 cut(s) 202, 235, 259, 499, 504, 565
PleI GAGTC 4 cut(s) 35, 54, 297, 306
PluTI GGCGCC 1 cut(s) 8
PpsI GAGTC 4 cut(s) 35, 54, 297, 306
PshAI GACNNNNGTC 2 cut(s) 33, 45
Psp6I CCWGG 1 cut(s) 174
PspGI CCWGG 1 cut(s) 174
PspN4I GGNNCC 4 cut(s) 6, 180, 438, 456
PspPI GGNCC 1 cut(s) 179
PspXI VCTCGAGB 1 cut(s) 43
PstI CTGCAG 1 cut(s) 507
PsuI RGATCY 2 cut(s) 113, 132
PvuII CAGCTG 1 cut(s) 236
SalI GTCGAC 1 cut(s) 300
SaqAI TTAA 1 cut(s) 417
SatI GCNGC 6 cut(s) 201, 234, 258, 498, 503, 564
Sau3AI GATC 3 cut(s) 76, 113, 132
Sau96I GGNCC 1 cut(s) 179
SchI GAGTC 4 cut(s) 35, 55, 297, 307
ScrFI CCNGG 3 cut(s) 176, 274, 441
SduI GDGCHC 1 cut(s) 556
SetI ASST 9 cut(s) 61, 69, 150, 171, 238, 381, 471, 516, 523
SfaNI GCATC 2 cut(s) 384, 498
SfcI CTRYAG 1 cut(s) 503
SfoI GGCGCC 1 cut(s) 6
Sfr274I CTCGAG 1 cut(s) 43
SinI GGWCC 1 cut(s) 179
SlaI CTCGAG 1 cut(s) 43
SmlI CTYRAG 2 cut(s) 43, 68
SmoI CTYRAG 2 cut(s) 43, 68
Sse9I AATT 1 cut(s) 101
SsiI CCGC 7 cut(s) 213, 257, 351, 374, 497, 563, 582
SspDI GGCGCC 1 cut(s) 4
SspMI CTAG 2 cut(s) 473, 567
StyD4I CCNGG 3 cut(s) 174, 272, 439
StyI CCWWGG 1 cut(s) 252
TaaI ACNGT 3 cut(s) 223, 346, 529
TaiI ACGT 1 cut(s) 61
TaqI TCGA 6 cut(s) 20, 44, 61, 153, 301, 517
TasI AATT 1 cut(s) 101
TauI GCSGC 3 cut(s) 260, 500, 566
TfiI GAWTC 2 cut(s) 289, 421
Tru1I TTAA 1 cut(s) 417
Tru9I TTAA 1 cut(s) 417
TscAI CASTG 1 cut(s) 228
TseI GCWGC 3 cut(s) 200, 233, 502
TspGWI ACGGA 3 cut(s) 145, 447, 551
TspRI CASTG 1 cut(s) 228
VpaK11BI GGWCC 1 cut(s) 179
XbaI TCTAGA 1 cut(s) 472
XhoI CTCGAG 1 cut(s) 43
XmiI GTMKAC 1 cut(s) 301
XspI CTAG 2 cut(s) 473, 567
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.