Prupe.6G311800_v2.0.a1

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0013101
Physical Location & Seq
Reverse (-)
27938959 .. 27940371
1413 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G311800.1

Sequence Viewer

Length: 624 bp
ATGGCGGCGTCGCTGATCTCAAACGTCGACGGAAGCCTCGACGCGTCGTTGATAGAGTCGTCTCGCAAAAAGCGGAGGAAAATCGGAGCCGTCGAATCGGATCGGAATCCTACTACGAACACCGGAGCCCGATGGAGATCCGAGACGGAGCAACGGATCTACTCCACGAAGCTCGTGGAGGCGCTCCGTCAGGCTCGCCAGAGATCGTCGCGGGCGGCCAAGGTCTCCGGAGGGGGCAGGGAAGTGAAGAAGGCGGCGGACCGAGTTCTGGCGGCGGCGGCCAAGGGCACGACTCGGTGGAGCAGAGCGATTTTAAGAACTCGACTCAGATTGAACCAGAAGCTTCACAAACGTAGAACGGCGAGGGTGACGGGGAATAACCGGTTGAAGAAAGCGGAGGTTAGGAGGGAGGGGAGGAAGTCACCGGTTGTGGAGAGAAAAGTTCGGGTTCTGAGCCGGTTAGTTCCCGGTTGCCGGAAGGCGTCGTTGCCGAACCTTCTAGAAGAAACGAGCGATTACATATCGGCTCTGGAGATGCAGGTGAGAGCCATGGCTGCTCTCACCGAGCTTCTCTCCGGTTCGCCGGTTAATCACGTCGGCTCGAGCCTCAGTTCTTCGAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

208

Amino Acids

22.83

Weight (kDa)

11.59

Isoelectric Point (pI)

56.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013101)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G09250
fragaria_vesca FvH4_6g07630 FvH4_6g07630
malus_domestica MD04G1192700.v1.1 MD12G1204600.v1.1
prunus_persica Prupe.6G311800_v2.0.a1
pyrus_communis pycom04g17000 pycom12g19250
rosa_chinensis RchiOBHm_Chr3g0457291
rosa_laevigata RLG00000025236
rosa_multiflora Rmu_sc0005442.1_g000012
rosa_roxburghii Rroxscaffold_6G00422010
rosa_rugosa Rorug03G0019700
rosa_samantha Rh3AG079800 Rh3BG081500 Rh3CG081900 Rh3DG083500
rosa_wichuraiana Rw3G006880

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 529
Acc36I ACCTGC 1 cut(s) 529
AccI GTMKAC 1 cut(s) 27
AccII CGCG 2 cut(s) 44, 211
AccIII TCCGGA 1 cut(s) 227
AclWI GGATC 3 cut(s) 108, 132, 164
AcoI YGGCCR 2 cut(s) 216, 279
AcyI GRCGYC 2 cut(s) 8, 482
AfiI CCNNNNNNNGG 2 cut(s) 268, 474
AflIII ACRYGT 1 cut(s) 42
AgeI ACCGGT 2 cut(s) 381, 424
AgsI TTSAA 2 cut(s) 334, 388
AjiI CACGTC 1 cut(s) 595
AluBI AGCT 3 cut(s) 172, 343, 568
AluI AGCT 3 cut(s) 172, 343, 568
Alw26I GTCTC 3 cut(s) 66, 137, 229
AlwI GGATC 3 cut(s) 108, 132, 164
Ama87I CYCGRG 1 cut(s) 601
Aor13HI TCCGGA 1 cut(s) 227
AoxI GGCC 2 cut(s) 216, 279
ApeKI GCWGC 1 cut(s) 554
AsiGI ACCGGT 2 cut(s) 381, 424
AspLEI GCGC 1 cut(s) 184
AspS9I GGNCC 1 cut(s) 259
AsuC2I CCSGG 1 cut(s) 468
AsuHPI GGTGA 4 cut(s) 379, 414, 553, 553
AvaI CYCGRG 1 cut(s) 601
AvaII GGWCC 1 cut(s) 259
BaeGI GKGCMC 1 cut(s) 290
BanII GRGCYC 1 cut(s) 130
BauI CACGAG 1 cut(s) 173
BbvI GCAGC 1 cut(s) 541
BccI CCATC 1 cut(s) 126
BceAI ACGGC 2 cut(s) 74, 375
BcnI CCSGG 1 cut(s) 468
BcoDI GTCTC 3 cut(s) 66, 137, 229
BfaI CTAG 1 cut(s) 500
BfoI RGCGCY 1 cut(s) 185
BfuAI ACCTGC 1 cut(s) 529
BisI GCNGC 7 cut(s) 6, 216, 255, 273, 276, 279, 555
BlsI GCNGC 7 cut(s) 7, 217, 256, 274, 277, 280, 556
Bme1390I CCNGG 1 cut(s) 468
Bme18I GGWCC 1 cut(s) 259
BmeT110I CYCGRG 1 cut(s) 601
BmgBI CACGTC 1 cut(s) 595
BmgT120I GGNCC 1 cut(s) 259
BmiI GGNNCC 2 cut(s) 88, 127
BmrFI CCNGG 1 cut(s) 468
BmsI GCATC 1 cut(s) 525
BplI GAGNNNNNCTC 2 cut(s) 557, 589
BpmI CTGGAG 1 cut(s) 551
BpuMI CCSGG 1 cut(s) 468
BsaBI GATNNNNATC 2 cut(s) 105, 136
BsaHI GRCGYC 2 cut(s) 8, 482
BsaI GGTCTC 1 cut(s) 229
BsaJI CCNNGG 3 cut(s) 219, 282, 549
BsaWI WCCGGW 5 cut(s) 122, 227, 381, 424, 575
Bsc4I CCNNNNNNNGG 2 cut(s) 268, 474
Bse118I RCCGGY 4 cut(s) 381, 424, 456, 583
Bse8I GATNNNNATC 2 cut(s) 105, 136
BseAI TCCGGA 1 cut(s) 227
BseDI CCNNGG 3 cut(s) 219, 282, 549
BseJI GATNNNNATC 2 cut(s) 105, 136
BseLI CCNNNNNNNGG 2 cut(s) 268, 474
BseMII CTCAG 3 cut(s) 340, 443, 622
BseSI GKGCMC 1 cut(s) 290
BseXI GCAGC 1 cut(s) 541
Bsh1236I CGCG 2 cut(s) 44, 211
BshFI GGCC 2 cut(s) 218, 281
BshTI ACCGGT 2 cut(s) 381, 424
BsiHKCI CYCGRG 1 cut(s) 601
BsiSI CCGG 9 cut(s) 123, 228, 382, 425, 457, 468, 475, 576, 584
BslI CCNNNNNNNGG 2 cut(s) 268, 474
BsmAI GTCTC 3 cut(s) 66, 137, 229
BsmBI CGTCTC 2 cut(s) 66, 137
BsnI GGCC 2 cut(s) 218, 281
Bso31I GGTCTC 1 cut(s) 229
BsoBI CYCGRG 1 cut(s) 601
Bsp1286I GDGCHC 2 cut(s) 130, 290
Bsp13I TCCGGA 1 cut(s) 227
Bsp143I GATC 5 cut(s) 15, 100, 137, 156, 203
Bsp19I CCATGG 1 cut(s) 549
BspANI GGCC 2 cut(s) 218, 281
BspCNI CTCAG 3 cut(s) 339, 444, 621
BspEI TCCGGA 1 cut(s) 227
BspFNI CGCG 2 cut(s) 44, 211
BspLI GGNNCC 2 cut(s) 88, 127
BspMI ACCTGC 1 cut(s) 529
BspPI GGATC 3 cut(s) 108, 132, 164
BspTNI GGTCTC 1 cut(s) 229
BsrFI RCCGGY 4 cut(s) 381, 424, 456, 583
BssAI RCCGGY 4 cut(s) 381, 424, 456, 583
BssECI CCNNGG 3 cut(s) 219, 282, 549
BssMI GATC 5 cut(s) 15, 100, 137, 156, 203
BssNI GRCGYC 2 cut(s) 8, 482
BssSI CACGAG 1 cut(s) 173
BssT1I CCWWGG 3 cut(s) 219, 282, 549
Bst2BI CACGAG 1 cut(s) 173
BstACI GRCGYC 2 cut(s) 8, 482
BstC8I GCNNGC 2 cut(s) 196, 213
BstDEI CTNAG 3 cut(s) 326, 452, 608
BstDSI CCRYGG 1 cut(s) 549
BstFNI CGCG 2 cut(s) 44, 211
BstH2I RGCGCY 1 cut(s) 185
BstHHI GCGC 1 cut(s) 184
BstKTI GATC 5 cut(s) 18, 103, 140, 159, 206
BstMAI GTCTC 3 cut(s) 66, 137, 229
BstMBI GATC 5 cut(s) 15, 100, 137, 156, 203
BstMWI GCNNNNNNNGC 2 cut(s) 278, 554
BstSCI CCNGG 1 cut(s) 466
BstSLI GKGCMC 1 cut(s) 290
BstUI CGCG 2 cut(s) 44, 211
BstV1I GCAGC 1 cut(s) 541
BstX2I RGATCY 2 cut(s) 137, 156
BstYI RGATCY 2 cut(s) 137, 156
BsuRI GGCC 2 cut(s) 218, 281
BtgI CCRYGG 1 cut(s) 549
BtrI CACGTC 1 cut(s) 595
BveI ACCTGC 1 cut(s) 529
Cac8I GCNNGC 2 cut(s) 196, 213
CfoI GCGC 1 cut(s) 184
Cfr10I RCCGGY 4 cut(s) 381, 424, 456, 583
Cfr13I GGNCC 1 cut(s) 259
CpoI CGGWCCG 1 cut(s) 259
CseI GACGC 3 cut(s) 33, 50, 471
CspAI ACCGGT 2 cut(s) 381, 424
CspI CGGWCCG 1 cut(s) 259
CviAII CATG 1 cut(s) 550
DdeI CTNAG 3 cut(s) 326, 452, 608
DpnI GATC 5 cut(s) 17, 102, 139, 158, 205
DpnII GATC 5 cut(s) 15, 100, 137, 156, 203
EaeI YGGCCR 2 cut(s) 216, 279
EciI GGCGGA 1 cut(s) 272
Eco130I CCWWGG 3 cut(s) 219, 282, 549
Eco24I GRGCYC 1 cut(s) 130
Eco31I GGTCTC 1 cut(s) 229
Eco47I GGWCC 1 cut(s) 259
Eco88I CYCGRG 1 cut(s) 601
EcoT14I CCWWGG 3 cut(s) 219, 282, 549
EcoT38I GRGCYC 1 cut(s) 130
ErhI CCWWGG 3 cut(s) 219, 282, 549
Esp3I CGTCTC 2 cut(s) 66, 137
FaeI CATG 1 cut(s) 553
FaiI YATR 2 cut(s) 521, 551
FatI CATG 1 cut(s) 549
FauI CCCGC 1 cut(s) 204
FblI GTMKAC 1 cut(s) 27
Fnu4HI GCNGC 7 cut(s) 6, 216, 255, 273, 276, 279, 555
FriOI GRGCYC 1 cut(s) 130
Fsp4HI GCNGC 7 cut(s) 6, 216, 255, 273, 276, 279, 555
FspBI CTAG 1 cut(s) 500
GlaI GCGC 1 cut(s) 183
GluI GCNGC 7 cut(s) 6, 216, 255, 273, 276, 279, 555
GsuI CTGGAG 1 cut(s) 551
HaeII RGCGCY 1 cut(s) 185
HaeIII GGCC 2 cut(s) 218, 281
HapII CCGG 9 cut(s) 123, 228, 382, 425, 457, 468, 475, 576, 584
HgaI GACGC 3 cut(s) 33, 50, 471
HhaI GCGC 1 cut(s) 184
Hin1I GRCGYC 2 cut(s) 8, 482
Hin1II CATG 1 cut(s) 553
Hin6I GCGC 1 cut(s) 182
HinP1I GCGC 1 cut(s) 182
HincII GTYRAC 1 cut(s) 28
HindII GTYRAC 1 cut(s) 28
HindIII AAGCTT 1 cut(s) 341
HinfI GANTC 5 cut(s) 56, 95, 106, 292, 324
HpaII CCGG 9 cut(s) 123, 228, 382, 425, 457, 468, 475, 576, 584
HphI GGTGA 4 cut(s) 379, 414, 553, 553
Hpy166II GTNNAC 1 cut(s) 28
Hpy188I TCNGA 6 cut(s) 86, 100, 105, 142, 329, 453
Hpy188III TCNNGA 3 cut(s) 228, 500, 530
Hpy8I GTNNAC 1 cut(s) 28
Hpy99I CGWCG 9 cut(s) 13, 29, 32, 44, 49, 95, 211, 487, 599
HpyAV CCTTC 3 cut(s) 244, 472, 506
HpyCH4IV ACGT 3 cut(s) 24, 352, 594
HpyCH4V TGCA 1 cut(s) 538
HpyF10VI GCNNNNNNNGC 2 cut(s) 278, 554
HpyF3I CTNAG 3 cut(s) 326, 452, 608
HpySE526I ACGT 3 cut(s) 24, 352, 594
Hsp92I GRCGYC 2 cut(s) 8, 482
Hsp92II CATG 1 cut(s) 553
HspAI GCGC 1 cut(s) 182
Kpn2I TCCGGA 1 cut(s) 227
Kzo9I GATC 5 cut(s) 15, 100, 137, 156, 203
LmnI GCTCC 5 cut(s) 86, 125, 148, 189, 300
Lsp1109I GCAGC 1 cut(s) 541
LweI GCATC 1 cut(s) 525
MaeI CTAG 1 cut(s) 500
MaeII ACGT 3 cut(s) 24, 352, 594
MaeIII GTNAC 2 cut(s) 367, 420
MalI GATC 5 cut(s) 17, 102, 139, 158, 205
MboI GATC 5 cut(s) 15, 100, 137, 156, 203
MboII GAAGA 4 cut(s) 259, 400, 515, 606
MflI RGATCY 2 cut(s) 137, 156
MhlI GDGCHC 2 cut(s) 130, 290
MluI ACGCGT 1 cut(s) 42
MlyI GAGTC 3 cut(s) 65, 286, 318
MroI TCCGGA 1 cut(s) 227
MseI TTAA 2 cut(s) 314, 588
MspI CCGG 9 cut(s) 123, 228, 382, 425, 457, 468, 475, 576, 584
MspR9I CCNGG 1 cut(s) 468
MvnI CGCG 2 cut(s) 44, 211
MwoI GCNNNNNNNGC 2 cut(s) 278, 554
NciI CCSGG 1 cut(s) 468
NcoI CCATGG 1 cut(s) 549
NdeII GATC 5 cut(s) 15, 100, 137, 156, 203
NlaIII CATG 1 cut(s) 553
NlaIV GGNNCC 2 cut(s) 88, 127
NmuCI GTSAC 2 cut(s) 367, 420
PaeR7I CTCGAG 1 cut(s) 601
PaqCI CACCTGC 1 cut(s) 529
PcsI WCGNNNNNNNCGW 2 cut(s) 36, 90
PfeI GAWTC 2 cut(s) 95, 106
PinAI ACCGGT 2 cut(s) 381, 424
PkrI GCNGC 7 cut(s) 7, 217, 256, 274, 277, 280, 556
PleI GAGTC 3 cut(s) 64, 286, 318
PpsI GAGTC 3 cut(s) 64, 286, 318
PspN4I GGNNCC 2 cut(s) 88, 127
PspPI GGNCC 1 cut(s) 259
PspXI VCTCGAGB 1 cut(s) 601
PsuI RGATCY 2 cut(s) 137, 156
Rsr2I CGGWCCG 1 cut(s) 259
RsrII CGGWCCG 1 cut(s) 259
SalI GTCGAC 1 cut(s) 26
SaqAI TTAA 2 cut(s) 314, 588
SatI GCNGC 7 cut(s) 6, 216, 255, 273, 276, 279, 555
Sau3AI GATC 5 cut(s) 15, 100, 137, 156, 203
Sau96I GGNCC 1 cut(s) 259
SchI GAGTC 3 cut(s) 65, 286, 318
ScrFI CCNGG 1 cut(s) 468
SduI GDGCHC 2 cut(s) 130, 290
SfaNI GCATC 1 cut(s) 525
Sfr274I CTCGAG 1 cut(s) 601
SgrDI CGTCGACG 1 cut(s) 26
SinI GGWCC 1 cut(s) 259
SlaI CTCGAG 1 cut(s) 601
SmlI CTYRAG 1 cut(s) 601
SmoI CTYRAG 1 cut(s) 601
SspMI CTAG 1 cut(s) 500
StyD4I CCNGG 1 cut(s) 466
StyI CCWWGG 3 cut(s) 219, 282, 549
TaiI ACGT 3 cut(s) 27, 355, 597
TaqI TCGA 6 cut(s) 27, 39, 93, 322, 602, 617
TaqII GACCGA 1 cut(s) 276
TauI GCSGC 6 cut(s) 8, 218, 257, 275, 278, 281
TfiI GAWTC 2 cut(s) 95, 106
Tru1I TTAA 2 cut(s) 314, 588
Tru9I TTAA 2 cut(s) 314, 588
TseFI GTSAC 2 cut(s) 367, 420
TseI GCWGC 1 cut(s) 554
Tsp45I GTSAC 2 cut(s) 367, 420
TspGWI ACGGA 4 cut(s) 45, 161, 169, 176
VpaK11BI GGWCC 1 cut(s) 259
XbaI TCTAGA 1 cut(s) 499
XcmI CCANNNNNNNNNTGG 1 cut(s) 172
XhoI CTCGAG 1 cut(s) 601
XmiI GTMKAC 1 cut(s) 27
XspI CTAG 1 cut(s) 500
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.