MD04G1192700.v1.1

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
OG0013101
Physical Location & Seq
Reverse (-)
28187481 .. 28188750
1270 bp
Loading structure...
UTR
Exon/CDS
Intron
MD04G1192700.v1.1.491

Sequence Viewer

Length: 630 bp
ATGGCGGCGTCGATGATGTCGAACTTTGACGGAAGCCTGGACGCGTTGTCGATGGAGTCGAGCCGGAAAAAGCGGAGAAAAACCGGAGTCGTTGAAGAGGATCAGAATCGGAGCTTAGAAACCGGAGTCCGATGGAGATCCGAGACGGAGCAGCGGATCTACTCGACGAAGCTCGCGGCGGCACTTCGTCAGGTGCGACGGAGATCATCTACGTCGTCGGCGGCGGTGGCGAAGGTAGCGGGAGGCGGGAGAGACGTGAAGGAAGCGGCGGACCGTGTTCTGGCGACAGCGGCGAAGGGGACGACTCGGTGGAGCAGGGCGATTCTAACGGCTCGTCTCAGGATAAGCAAAACGATTCACAAGCGGAGAAAGGCGAGGGTGACCGGGCACAACAGGTTGAAGAAAACGGAGGTTAGGAGAGAGAGGATAATGTTACCAGTTGTGCAGAAAAAAGTTCGGGTTCTGAGCCGGTTGGTTCCCGGTTGCCGAAAGACGTCGCTGCCAAACCTTCTAGAAGAAACGACCGATTACATAGCGGCTTTGGAGATGCAGGTCAGAGCCATGGCAGCTCTCGCCGAGTTACTTTCCGGTTCGCCAGTGAACCGTCCCGGTTCGAGTGTCAACAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

210

Amino Acids

23.17

Weight (kDa)

11.47

Isoelectric Point (pI)

65.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
IBH1_N PF26576 49 - 111 3e-09 IBH1-like, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013101)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G09250
fragaria_vesca FvH4_6g07630 FvH4_6g07630
malus_domestica MD04G1192700.v1.1 MD12G1204600.v1.1
prunus_persica Prupe.6G311800_v2.0.a1
pyrus_communis pycom04g17000 pycom12g19250
rosa_chinensis RchiOBHm_Chr3g0457291
rosa_laevigata RLG00000025236
rosa_multiflora Rmu_sc0005442.1_g000012
rosa_roxburghii Rroxscaffold_6G00422010
rosa_rugosa Rorug03G0019700
rosa_samantha Rh3AG079800 Rh3BG081500 Rh3CG081900 Rh3DG083500
rosa_wichuraiana Rw3G006880

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 497
Acc36I ACCTGC 1 cut(s) 541
AccII CGCG 2 cut(s) 44, 176
AclWI GGATC 3 cut(s) 108, 132, 164
AcyI GRCGYC 2 cut(s) 8, 494
AfiI CCNNNNNNNGG 1 cut(s) 280
AflIII ACRYGT 1 cut(s) 42
AgsI TTSAA 2 cut(s) 95, 400
AhdI GACNNNNNGTC 1 cut(s) 46
AjiI CACGTC 1 cut(s) 256
AjnI CCWGG 1 cut(s) 36
AluBI AGCT 3 cut(s) 114, 172, 569
AluI AGCT 3 cut(s) 114, 172, 569
Alw26I GTCTC 3 cut(s) 137, 246, 341
AlwI GGATC 3 cut(s) 108, 132, 164
ApeKI GCWGC 3 cut(s) 151, 499, 566
AspS9I GGNCC 1 cut(s) 271
AsuC2I CCSGG 3 cut(s) 385, 480, 609
AsuHPI GGTGA 1 cut(s) 391
AvaII GGWCC 1 cut(s) 271
BaeGI GKGCMC 1 cut(s) 390
BbvI GCAGC 3 cut(s) 163, 486, 578
BccI CCATC 2 cut(s) 46, 126
BceAI ACGGC 1 cut(s) 345
BciT130I CCWGG 1 cut(s) 38
BcnI CCSGG 3 cut(s) 385, 480, 609
BcoDI GTCTC 3 cut(s) 137, 246, 341
BfaI CTAG 1 cut(s) 512
BfuAI ACCTGC 1 cut(s) 541
Bme1390I CCNGG 4 cut(s) 38, 385, 480, 609
Bme18I GGWCC 1 cut(s) 271
BmeRI GACNNNNNGTC 1 cut(s) 46
BmgBI CACGTC 1 cut(s) 256
BmgT120I GGNCC 1 cut(s) 271
BmiI GGNNCC 1 cut(s) 477
BmrFI CCNGG 4 cut(s) 38, 385, 480, 609
BmsI GCATC 1 cut(s) 537
BpuMI CCSGG 3 cut(s) 385, 480, 609
BsaBI GATNNNNATC 2 cut(s) 105, 136
BsaHI GRCGYC 2 cut(s) 8, 494
BsaJI CCNNGG 1 cut(s) 561
BsaWI WCCGGW 3 cut(s) 83, 122, 587
Bsc4I CCNNNNNNNGG 1 cut(s) 280
Bse118I RCCGGY 1 cut(s) 468
Bse1I ACTGG 2 cut(s) 437, 596
Bse8I GATNNNNATC 2 cut(s) 105, 136
BseBI CCWGG 1 cut(s) 38
BseDI CCNNGG 1 cut(s) 561
BseJI GATNNNNATC 2 cut(s) 105, 136
BseLI CCNNNNNNNGG 1 cut(s) 280
BseMII CTCAG 2 cut(s) 352, 455
BseNI ACTGG 2 cut(s) 437, 596
BseSI GKGCMC 1 cut(s) 390
BseXI GCAGC 3 cut(s) 163, 486, 578
BsgI GTGCAG 1 cut(s) 464
Bsh1236I CGCG 2 cut(s) 44, 176
Bsh1285I CGRYCG 1 cut(s) 525
BsiEI CGRYCG 1 cut(s) 525
BsiSI CCGG 8 cut(s) 64, 84, 123, 384, 469, 480, 588, 609
BslFI GGGAC 2 cut(s) 313, 591
BslI CCNNNNNNNGG 1 cut(s) 280
BsmAI GTCTC 3 cut(s) 137, 246, 341
BsmBI CGTCTC 3 cut(s) 137, 246, 341
BsmFI GGGAC 2 cut(s) 313, 591
Bsp1286I GDGCHC 1 cut(s) 390
Bsp143I GATC 4 cut(s) 100, 137, 156, 203
Bsp19I CCATGG 1 cut(s) 561
BspCNI CTCAG 2 cut(s) 351, 456
BspFNI CGCG 2 cut(s) 44, 176
BspLI GGNNCC 1 cut(s) 477
BspMI ACCTGC 1 cut(s) 541
BspPI GGATC 3 cut(s) 108, 132, 164
BsrFI RCCGGY 1 cut(s) 468
BsrI ACTGG 2 cut(s) 437, 596
BssAI RCCGGY 1 cut(s) 468
BssECI CCNNGG 1 cut(s) 561
BssMI GATC 4 cut(s) 100, 137, 156, 203
BssNI GRCGYC 2 cut(s) 8, 494
BssT1I CCWWGG 1 cut(s) 561
Bst2UI CCWGG 1 cut(s) 38
Bst4CI ACNGT 3 cut(s) 275, 605, 626
Bst6I CTCTTC 1 cut(s) 90
BstACI GRCGYC 2 cut(s) 8, 494
BstC8I GCNNGC 1 cut(s) 174
BstDEI CTNAG 3 cut(s) 115, 338, 464
BstDSI CCRYGG 1 cut(s) 561
BstEII GGTNACC 1 cut(s) 379
BstFNI CGCG 2 cut(s) 44, 176
BstKTI GATC 4 cut(s) 103, 140, 159, 206
BstMAI GTCTC 3 cut(s) 137, 246, 341
BstMBI GATC 4 cut(s) 100, 137, 156, 203
BstMCI CGRYCG 1 cut(s) 525
BstMWI GCNNNNNNNGC 5 cut(s) 227, 236, 290, 566, 572
BstNI CCWGG 1 cut(s) 38
BstPI GGTNACC 1 cut(s) 379
BstSCI CCNGG 4 cut(s) 36, 383, 478, 607
BstSLI GKGCMC 1 cut(s) 390
BstUI CGCG 2 cut(s) 44, 176
BstV1I GCAGC 3 cut(s) 163, 486, 578
BstX2I RGATCY 2 cut(s) 137, 156
BstYI RGATCY 2 cut(s) 137, 156
BtgI CCRYGG 1 cut(s) 561
BtrI CACGTC 1 cut(s) 256
BtsIMutI CAGTG 1 cut(s) 603
BveI ACCTGC 1 cut(s) 541
Cac8I GCNNGC 1 cut(s) 174
Cfr10I RCCGGY 1 cut(s) 468
Cfr13I GGNCC 1 cut(s) 271
CpoI CGGWCCG 1 cut(s) 271
CseI GACGC 1 cut(s) 50
CspI CGGWCCG 1 cut(s) 271
CviAII CATG 1 cut(s) 562
CviJI RGCY 9 cut(s) 36, 63, 114, 172, 332, 468, 539, 560, 569
CviKI_1 RGCY 9 cut(s) 36, 63, 114, 172, 332, 468, 539, 560, 569
DdeI CTNAG 3 cut(s) 115, 338, 464
DpnI GATC 4 cut(s) 102, 139, 158, 205
DpnII GATC 4 cut(s) 100, 137, 156, 203
DriI GACNNNNNGTC 1 cut(s) 46
Eam1104I CTCTTC 1 cut(s) 90
Eam1105I GACNNNNNGTC 1 cut(s) 46
EarI CTCTTC 1 cut(s) 90
EciI GGCGGA 1 cut(s) 284
Eco130I CCWWGG 1 cut(s) 561
Eco47I GGWCC 1 cut(s) 271
Eco91I GGTNACC 1 cut(s) 379
EcoO65I GGTNACC 1 cut(s) 379
EcoRII CCWGG 1 cut(s) 36
EcoT14I CCWWGG 1 cut(s) 561
ErhI CCWWGG 1 cut(s) 561
Esp3I CGTCTC 3 cut(s) 137, 246, 341
FaeI CATG 1 cut(s) 565
FaiI YATR 2 cut(s) 533, 563
FaqI GGGAC 2 cut(s) 313, 591
FatI CATG 1 cut(s) 561
FauI CCCGC 2 cut(s) 232, 239
FspBI CTAG 1 cut(s) 512
HapII CCGG 8 cut(s) 64, 84, 123, 384, 469, 480, 588, 609
HgaI GACGC 1 cut(s) 50
Hin1I GRCGYC 2 cut(s) 8, 494
Hin1II CATG 1 cut(s) 565
HincII GTYRAC 1 cut(s) 622
HindII GTYRAC 1 cut(s) 622
HinfI GANTC 7 cut(s) 56, 87, 106, 126, 304, 322, 355
HpaII CCGG 8 cut(s) 64, 84, 123, 384, 469, 480, 588, 609
HphI GGTGA 1 cut(s) 391
Hpy166II GTNNAC 2 cut(s) 601, 622
Hpy188I TCNGA 6 cut(s) 105, 111, 131, 142, 465, 557
Hpy188III TCNNGA 2 cut(s) 340, 512
Hpy8I GTNNAC 2 cut(s) 601, 622
Hpy99I CGWCG 6 cut(s) 13, 169, 201, 217, 220, 499
HpyAV CCTTC 4 cut(s) 226, 253, 289, 518
HpyCH4III ACNGT 3 cut(s) 275, 605, 626
HpyCH4IV ACGT 3 cut(s) 212, 255, 494
HpyCH4V TGCA 2 cut(s) 445, 550
HpyF10VI GCNNNNNNNGC 5 cut(s) 227, 236, 290, 566, 572
HpyF3I CTNAG 3 cut(s) 115, 338, 464
HpySE526I ACGT 3 cut(s) 212, 255, 494
Hsp92I GRCGYC 2 cut(s) 8, 494
Hsp92II CATG 1 cut(s) 565
Kzo9I GATC 4 cut(s) 100, 137, 156, 203
LmnI GCTCC 3 cut(s) 111, 148, 312
Lsp1109I GCAGC 3 cut(s) 163, 486, 578
LweI GCATC 1 cut(s) 537
MaeI CTAG 1 cut(s) 512
MaeII ACGT 3 cut(s) 212, 255, 494
MaeIII GTNAC 3 cut(s) 379, 432, 579
MalI GATC 4 cut(s) 102, 139, 158, 205
MboI GATC 4 cut(s) 100, 137, 156, 203
MboII GAAGA 3 cut(s) 107, 412, 527
MflI RGATCY 2 cut(s) 137, 156
MhlI GDGCHC 1 cut(s) 390
MluI ACGCGT 1 cut(s) 42
MlyI GAGTC 4 cut(s) 65, 96, 135, 298
MnlI CCTC 5 cut(s) 91, 236, 369, 403, 417
MspA1I CMGCKG 2 cut(s) 154, 290
MspI CCGG 8 cut(s) 64, 84, 123, 384, 469, 480, 588, 609
MspR9I CCNGG 4 cut(s) 38, 385, 480, 609
MvaI CCWGG 1 cut(s) 38
MvnI CGCG 2 cut(s) 44, 176
MwoI GCNNNNNNNGC 5 cut(s) 227, 236, 290, 566, 572
NciI CCSGG 3 cut(s) 385, 480, 609
NcoI CCATGG 1 cut(s) 561
NdeII GATC 4 cut(s) 100, 137, 156, 203
NlaIII CATG 1 cut(s) 565
NlaIV GGNNCC 1 cut(s) 477
NmeAIII GCCGAG 1 cut(s) 601
NmuCI GTSAC 1 cut(s) 379
PcsI WCGNNNNNNNCGW 3 cut(s) 17, 56, 193
PfeI GAWTC 3 cut(s) 106, 322, 355
PleI GAGTC 4 cut(s) 64, 95, 134, 298
PpsI GAGTC 4 cut(s) 64, 95, 134, 298
Psp6I CCWGG 1 cut(s) 36
PspEI GGTNACC 1 cut(s) 379
PspGI CCWGG 1 cut(s) 36
PspN4I GGNNCC 1 cut(s) 477
PspPI GGNCC 1 cut(s) 271
PsuI RGATCY 2 cut(s) 137, 156
Rsr2I CGGWCCG 1 cut(s) 271
RsrII CGGWCCG 1 cut(s) 271
Sau3AI GATC 4 cut(s) 100, 137, 156, 203
Sau96I GGNCC 1 cut(s) 271
SchI GAGTC 4 cut(s) 65, 96, 135, 298
ScrFI CCNGG 4 cut(s) 38, 385, 480, 609
SduI GDGCHC 1 cut(s) 390
SfaNI GCATC 1 cut(s) 537
SinI GGWCC 1 cut(s) 271
SspMI CTAG 1 cut(s) 512
StyD4I CCNGG 4 cut(s) 36, 383, 478, 607
StyI CCWWGG 1 cut(s) 561
TaaI ACNGT 3 cut(s) 275, 605, 626
TaiI ACGT 3 cut(s) 215, 258, 497
TaqI TCGA 6 cut(s) 11, 20, 50, 59, 164, 614
TaqII GACCGA 1 cut(s) 539
TauI GCSGC 7 cut(s) 8, 179, 182, 224, 269, 293, 539
TfiI GAWTC 3 cut(s) 106, 322, 355
TscAI CASTG 1 cut(s) 603
TseFI GTSAC 1 cut(s) 379
TseI GCWGC 3 cut(s) 151, 499, 566
Tsp45I GTSAC 1 cut(s) 379
TspGWI ACGGA 4 cut(s) 45, 161, 214, 422
TspRI CASTG 1 cut(s) 603
VpaK11BI GGWCC 1 cut(s) 271
XbaI TCTAGA 1 cut(s) 511
XspI CTAG 1 cut(s) 512
ZraI GACGTC 1 cut(s) 495
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.