MD12G1204600.v1.1

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr12
OG0013101
Physical Location & Seq
Reverse (-)
28540002 .. 28541228
1227 bp
Loading structure...
UTR
Exon/CDS
Intron
MD12G1204600.v1.1.491

Sequence Viewer

Length: 639 bp
ATGGCGGCGTCGATGATCTCAAACCTTGACGGAAGTCTCGACGCGTCGTCGATAGAGTCGAGCAGAAAAAAGCGGAGAAAAACCGGAGTCGTGGAAGAGGATCGGAATCGGAGCTCAAAAACCGGAGTTCGATGGAGATCAGAGACGGAGCAACGGATCTACTCGACGAAGCTCGGGGAAGCGCTTCGTCAGGTGCGACAGAGATCGGCTACATCATCGTCGGCGGCAGTGGCTAAGGTATCGGGCGGCGGGAGAGACGTGAAGGAAGCGGCAGACCGAGTTCTGGCAACGGTGGCGAAGGGGACGACTCTGTGGAGCAGGGCGATCCTAACAAGTCGAATGAGGCTGAGCAAAACGCTTCACAAGCGGAGAAGGGCGAGGGTAACAGGGGACAACCGGTTGAAGAAAACGGAGTTTAGGAGAGAGAGGAGGAAGTTACCGGCTGTGCAGAAAAAGGTTCGGGTTCTGAGCCAATTGGTTCCCGGCTGCCGGAAGACGTCGTTGCCGAACCTTCTAGAAGAAACTACCGATTATATAGCAGCTTTGGAGATGCAGGTCAGAGCCATGGCGGCTCTCGCCGAGTTACTTTCTGGTTCACCGGTGAACCGCTCCGGCTCGAGTGGCAACTCTTCGAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

213

Amino Acids

23.36

Weight (kDa)

11.39

Isoelectric Point (pI)

66.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
IBH1_N PF26576 49 - 113 2e-06 IBH1-like, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013101)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G09250
fragaria_vesca FvH4_6g07630 FvH4_6g07630
malus_domestica MD04G1192700.v1.1 MD12G1204600.v1.1
prunus_persica Prupe.6G311800_v2.0.a1
pyrus_communis pycom04g17000 pycom12g19250
rosa_chinensis RchiOBHm_Chr3g0457291
rosa_laevigata RLG00000025236
rosa_multiflora Rmu_sc0005442.1_g000012
rosa_roxburghii Rroxscaffold_6G00422010
rosa_rugosa Rorug03G0019700
rosa_samantha Rh3AG079800 Rh3BG081500 Rh3CG081900 Rh3DG083500
rosa_wichuraiana Rw3G006880

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 500
Acc36I ACCTGC 1 cut(s) 544
AccBSI CCGCTC 1 cut(s) 609
AccII CGCG 1 cut(s) 44
AciI CCGC 9 cut(s) 5, 73, 224, 246, 249, 269, 367, 569, 607
AclWI GGATC 3 cut(s) 108, 164, 319
AcyI GRCGYC 2 cut(s) 8, 497
AfeI AGCGCT 1 cut(s) 183
AfiI CCNNNNNNNGG 2 cut(s) 283, 489
AflIII ACRYGT 1 cut(s) 42
AgeI ACCGGT 2 cut(s) 396, 598
AgsI TTSAA 1 cut(s) 403
AhdI GACNNNNNGTC 1 cut(s) 46
AjiI CACGTC 1 cut(s) 259
AluBI AGCT 3 cut(s) 114, 172, 542
AluI AGCT 3 cut(s) 114, 172, 542
Alw21I GWGCWC 1 cut(s) 116
Alw26I GTCTC 3 cut(s) 41, 137, 249
AlwI GGATC 3 cut(s) 108, 164, 319
Ama87I CYCGRG 2 cut(s) 173, 616
Aor51HI AGCGCT 1 cut(s) 183
ApeKI GCWGC 2 cut(s) 486, 539
AsiGI ACCGGT 2 cut(s) 396, 598
Asp700I GAANNNNTTC 1 cut(s) 183
AspLEI GCGC 1 cut(s) 184
AsuC2I CCSGG 1 cut(s) 483
AsuHPI GGTGA 2 cut(s) 588, 613
AvaI CYCGRG 2 cut(s) 173, 616
BanII GRGCYC 1 cut(s) 116
BbsI GAAGAC 1 cut(s) 500
Bbv12I GWGCWC 1 cut(s) 116
BbvI GCAGC 2 cut(s) 473, 551
BccI CCATC 1 cut(s) 126
BcnI CCSGG 1 cut(s) 483
BcoDI GTCTC 3 cut(s) 41, 137, 249
BfaI CTAG 1 cut(s) 515
BfoI RGCGCY 1 cut(s) 185
BfuAI ACCTGC 1 cut(s) 544
BglI GCCNNNNNGGC 1 cut(s) 569
BisI GCNGC 7 cut(s) 6, 225, 247, 270, 487, 540, 570
BlpI GCTNAGC 1 cut(s) 347
BlsI GCNGC 7 cut(s) 7, 226, 248, 271, 488, 541, 571
Bme1390I CCNGG 1 cut(s) 483
BmeRI GACNNNNNGTC 1 cut(s) 46
BmeT110I CYCGRG 2 cut(s) 173, 616
BmgBI CACGTC 1 cut(s) 259
BmiI GGNNCC 1 cut(s) 480
BmrFI CCNGG 1 cut(s) 483
BmsI GCATC 1 cut(s) 540
BoxI GACNNNNGTC 1 cut(s) 33
BpiI GAAGAC 1 cut(s) 500
Bpu10I CCTNAGC 1 cut(s) 234
Bpu1102I GCTNAGC 1 cut(s) 347
BpuMI CCSGG 1 cut(s) 483
BsaBI GATNNNNATC 2 cut(s) 105, 136
BsaHI GRCGYC 2 cut(s) 8, 497
BsaJI CCNNGG 1 cut(s) 564
BsaWI WCCGGW 4 cut(s) 83, 122, 396, 598
Bsc4I CCNNNNNNNGG 2 cut(s) 283, 489
Bse118I RCCGGY 3 cut(s) 396, 439, 598
Bse8I GATNNNNATC 2 cut(s) 105, 136
BseDI CCNNGG 1 cut(s) 564
BseJI GATNNNNATC 2 cut(s) 105, 136
BseLI CCNNNNNNNGG 2 cut(s) 283, 489
BseMII CTCAG 2 cut(s) 338, 458
BseRI GAGGAG 1 cut(s) 442
BseXI GCAGC 2 cut(s) 473, 551
BsgI GTGCAG 1 cut(s) 467
Bsh1236I CGCG 1 cut(s) 44
BshTI ACCGGT 2 cut(s) 396, 598
BsiHKAI GWGCWC 1 cut(s) 116
BsiHKCI CYCGRG 2 cut(s) 173, 616
BsiSI CCGG 8 cut(s) 84, 123, 397, 440, 483, 490, 599, 612
BslFI GGGAC 2 cut(s) 316, 404
BslI CCNNNNNNNGG 2 cut(s) 283, 489
BsmAI GTCTC 3 cut(s) 41, 137, 249
BsmBI CGTCTC 2 cut(s) 137, 249
BsmFI GGGAC 2 cut(s) 316, 404
BsoBI CYCGRG 2 cut(s) 173, 616
Bsp1286I GDGCHC 1 cut(s) 116
Bsp143I GATC 6 cut(s) 15, 100, 137, 156, 203, 324
Bsp1720I GCTNAGC 1 cut(s) 347
Bsp19I CCATGG 1 cut(s) 564
BspACI CCGC 9 cut(s) 5, 73, 224, 246, 249, 269, 367, 569, 607
BspCNI CTCAG 2 cut(s) 339, 459
BspFNI CGCG 1 cut(s) 44
BspLI GGNNCC 1 cut(s) 480
BspMI ACCTGC 1 cut(s) 544
BspPI GGATC 3 cut(s) 108, 164, 319
BsrBI CCGCTC 1 cut(s) 609
BsrFI RCCGGY 3 cut(s) 396, 439, 598
BssAI RCCGGY 3 cut(s) 396, 439, 598
BssECI CCNNGG 1 cut(s) 564
BssMI GATC 6 cut(s) 15, 100, 137, 156, 203, 324
BssNI GRCGYC 2 cut(s) 8, 497
BssT1I CCWWGG 1 cut(s) 564
Bst4CI ACNGT 1 cut(s) 292
Bst6I CTCTTC 2 cut(s) 90, 634
BstACI GRCGYC 2 cut(s) 8, 497
BstDEI CTNAG 3 cut(s) 234, 347, 467
BstDSI CCRYGG 1 cut(s) 564
BstFNI CGCG 1 cut(s) 44
BstH2I RGCGCY 1 cut(s) 185
BstHHI GCGC 1 cut(s) 184
BstKTI GATC 6 cut(s) 18, 103, 140, 159, 206, 327
BstMAI GTCTC 3 cut(s) 41, 137, 249
BstMBI GATC 6 cut(s) 15, 100, 137, 156, 203, 324
BstMWI GCNNNNNNNGC 6 cut(s) 230, 293, 364, 569, 575, 621
BstPAI GACNNNNGTC 1 cut(s) 33
BstSCI CCNGG 1 cut(s) 481
BstUI CGCG 1 cut(s) 44
BstV1I GCAGC 2 cut(s) 473, 551
BstV2I GAAGAC 1 cut(s) 500
BstX2I RGATCY 1 cut(s) 156
BstYI RGATCY 1 cut(s) 156
BtgI CCRYGG 1 cut(s) 564
BtrI CACGTC 1 cut(s) 259
BtsI GCAGTG 1 cut(s) 234
BtsIMutI CAGTG 1 cut(s) 234
BveI ACCTGC 1 cut(s) 544
CfoI GCGC 1 cut(s) 184
Cfr10I RCCGGY 3 cut(s) 396, 439, 598
CseI GACGC 2 cut(s) 33, 50
CspAI ACCGGT 2 cut(s) 396, 598
CviAII CATG 1 cut(s) 565
DdeI CTNAG 3 cut(s) 234, 347, 467
DpnI GATC 6 cut(s) 17, 102, 139, 158, 205, 326
DpnII GATC 6 cut(s) 15, 100, 137, 156, 203, 324
DriI GACNNNNNGTC 1 cut(s) 46
Eam1104I CTCTTC 2 cut(s) 90, 634
Eam1105I GACNNNNNGTC 1 cut(s) 46
EarI CTCTTC 2 cut(s) 90, 634
Ecl136II GAGCTC 1 cut(s) 114
Eco130I CCWWGG 1 cut(s) 564
Eco24I GRGCYC 1 cut(s) 116
Eco47III AGCGCT 1 cut(s) 183
Eco53kI GAGCTC 1 cut(s) 114
Eco88I CYCGRG 2 cut(s) 173, 616
EcoICRI GAGCTC 1 cut(s) 114
EcoT14I CCWWGG 1 cut(s) 564
EcoT38I GRGCYC 1 cut(s) 116
ErhI CCWWGG 1 cut(s) 564
Esp3I CGTCTC 2 cut(s) 137, 249
FaeI CATG 1 cut(s) 568
FaiI YATR 3 cut(s) 534, 536, 566
FaqI GGGAC 2 cut(s) 316, 404
FatI CATG 1 cut(s) 564
FauI CCCGC 1 cut(s) 242
Fnu4HI GCNGC 7 cut(s) 6, 225, 247, 270, 487, 540, 570
FriOI GRGCYC 1 cut(s) 116
Fsp4HI GCNGC 7 cut(s) 6, 225, 247, 270, 487, 540, 570
FspBI CTAG 1 cut(s) 515
GlaI GCGC 1 cut(s) 183
GluI GCNGC 7 cut(s) 6, 225, 247, 270, 487, 540, 570
HaeII RGCGCY 1 cut(s) 185
HapII CCGG 8 cut(s) 84, 123, 397, 440, 483, 490, 599, 612
HgaI GACGC 2 cut(s) 33, 50
HhaI GCGC 1 cut(s) 184
Hin1I GRCGYC 2 cut(s) 8, 497
Hin1II CATG 1 cut(s) 568
Hin6I GCGC 1 cut(s) 182
HinP1I GCGC 1 cut(s) 182
HinfI GANTC 4 cut(s) 56, 87, 106, 307
HpaII CCGG 8 cut(s) 84, 123, 397, 440, 483, 490, 599, 612
HphI GGTGA 2 cut(s) 588, 613
Hpy166II GTNNAC 2 cut(s) 596, 604
Hpy188I TCNGA 5 cut(s) 105, 111, 142, 468, 560
Hpy188III TCNNGA 2 cut(s) 38, 515
Hpy8I GTNNAC 2 cut(s) 596, 604
Hpy99I CGWCG 7 cut(s) 13, 44, 49, 52, 169, 223, 502
HpyAV CCTTC 4 cut(s) 256, 292, 366, 521
HpyCH4III ACNGT 1 cut(s) 292
HpyCH4IV ACGT 2 cut(s) 258, 497
HpyCH4V TGCA 2 cut(s) 448, 553
HpyF10VI GCNNNNNNNGC 6 cut(s) 230, 293, 364, 569, 575, 621
HpyF3I CTNAG 3 cut(s) 234, 347, 467
HpySE526I ACGT 2 cut(s) 258, 497
Hsp92I GRCGYC 2 cut(s) 8, 497
Hsp92II CATG 1 cut(s) 568
HspAI GCGC 1 cut(s) 182
Kzo9I GATC 6 cut(s) 15, 100, 137, 156, 203, 324
LmnI GCTCC 4 cut(s) 111, 148, 315, 614
Lsp1109I GCAGC 2 cut(s) 473, 551
LweI GCATC 1 cut(s) 540
MaeI CTAG 1 cut(s) 515
MaeII ACGT 2 cut(s) 258, 497
MaeIII GTNAC 3 cut(s) 382, 435, 582
MalI GATC 6 cut(s) 17, 102, 139, 158, 205, 326
MbiI CCGCTC 1 cut(s) 609
MboI GATC 6 cut(s) 15, 100, 137, 156, 203, 324
MboII GAAGA 5 cut(s) 107, 415, 505, 530, 621
MfeI CAATTG 1 cut(s) 473
MflI RGATCY 1 cut(s) 156
MhlI GDGCHC 1 cut(s) 116
MluCI AATT 1 cut(s) 473
MluI ACGCGT 1 cut(s) 42
MlyI GAGTC 3 cut(s) 65, 96, 301
MnlI CCTC 5 cut(s) 91, 336, 372, 420, 423
MroXI GAANNNNTTC 1 cut(s) 183
MspI CCGG 8 cut(s) 84, 123, 397, 440, 483, 490, 599, 612
MspR9I CCNGG 1 cut(s) 483
MunI CAATTG 1 cut(s) 473
MvnI CGCG 1 cut(s) 44
MwoI GCNNNNNNNGC 6 cut(s) 230, 293, 364, 569, 575, 621
NciI CCSGG 1 cut(s) 483
NcoI CCATGG 1 cut(s) 564
NdeII GATC 6 cut(s) 15, 100, 137, 156, 203, 324
NlaIII CATG 1 cut(s) 568
NlaIV GGNNCC 1 cut(s) 480
NmeAIII GCCGAG 1 cut(s) 604
PaeR7I CTCGAG 1 cut(s) 616
PcsI WCGNNNNNNNCGW 4 cut(s) 36, 56, 193, 503
PdmI GAANNNNTTC 1 cut(s) 183
PfeI GAWTC 1 cut(s) 106
PinAI ACCGGT 2 cut(s) 396, 598
PkrI GCNGC 7 cut(s) 7, 226, 248, 271, 488, 541, 571
PleI GAGTC 3 cut(s) 64, 95, 301
PpsI GAGTC 3 cut(s) 64, 95, 301
PshAI GACNNNNGTC 1 cut(s) 33
Psp124BI GAGCTC 1 cut(s) 116
PspN4I GGNNCC 1 cut(s) 480
PspXI VCTCGAGB 1 cut(s) 616
PsuI RGATCY 1 cut(s) 156
SacI GAGCTC 1 cut(s) 116
SatI GCNGC 7 cut(s) 6, 225, 247, 270, 487, 540, 570
Sau3AI GATC 6 cut(s) 15, 100, 137, 156, 203, 324
SchI GAGTC 3 cut(s) 65, 96, 301
ScrFI CCNGG 1 cut(s) 483
SduI GDGCHC 1 cut(s) 116
SfaNI GCATC 1 cut(s) 540
Sfr274I CTCGAG 1 cut(s) 616
SgrAI CRCCGGYG 1 cut(s) 598
SlaI CTCGAG 1 cut(s) 616
SmlI CTYRAG 1 cut(s) 616
SmoI CTYRAG 1 cut(s) 616
Sse9I AATT 1 cut(s) 473
SsiI CCGC 9 cut(s) 5, 73, 224, 246, 249, 269, 367, 569, 607
SspMI CTAG 1 cut(s) 515
SstI GAGCTC 1 cut(s) 116
StyD4I CCNGG 1 cut(s) 481
StyI CCWWGG 1 cut(s) 564
TaaI ACNGT 1 cut(s) 292
TaiI ACGT 2 cut(s) 261, 500
TaqI TCGA 9 cut(s) 11, 39, 50, 59, 130, 164, 337, 617, 632
TaqII GACCGA 1 cut(s) 291
TasI AATT 1 cut(s) 473
TauI GCSGC 5 cut(s) 8, 227, 249, 272, 572
TfiI GAWTC 1 cut(s) 106
TscAI CASTG 1 cut(s) 234
TseI GCWGC 2 cut(s) 486, 539
TspGWI ACGGA 4 cut(s) 45, 161, 169, 425
TspRI CASTG 1 cut(s) 234
XbaI TCTAGA 1 cut(s) 514
XhoI CTCGAG 1 cut(s) 616
XmnI GAANNNNTTC 1 cut(s) 183
XspI CTAG 1 cut(s) 515
ZraI GACGTC 1 cut(s) 498
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.