Rh3BG081500

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0013101
Physical Location & Seq
Forward (+)
6389892 .. 6392006
2115 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG081500.1

Sequence Viewer

Length: 591 bp
ATGGCGGCCTCGTTTGTCTCGAACCCCGACCCCTGTCTTGACTCGAGTCGCAAGAAACGTCGAAAAGTCGAGGATGATCGGAATCCGGCTTCAACTACTCAAGTGAGATGGAGATCCGATAAAGAGCAACGGATCTATTCAACTAAGCTGGTGGAGGCGCTCCGGAAGGTTCGCCAGGGATCATCATCGTCGCCGGTAGCGGTCTCCGGGGGGAAAATCGTGAAGGAAGCAGCCGACAGGGTTCTGGCCGTGGCGGCGAAAGGCACGACTCGGTGGAGCAGAGCGATTCTGAGGAGTCGACTCAGGCTGAGCAAGAGGCTTCAGAAGTGTAGAAAGGCGAGGGTTACCGGGGATAGCCGGTGTAAGAGGGCGGACGTGAGGAGAGAGAGGAGGAGGACGCCGGCTGTGCAGAAGAAAGTTAAGGTTCTTAGCCAGTTGGTTCCCGGTTGCCGGAAGGCTCCGTTGCCGAACCTTCTAGAAGAAACAACCGATTACATAGCGGCGCTGGAGATGCAGGTTCGAGCTATGACGGCTCTGACGGAGCTTCTCTCCGGTGCTCCGGCGGCCAATCGTCTCAACTTTACCAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

196

Amino Acids

21.91

Weight (kDa)

11.23

Isoelectric Point (pI)

60.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
IBH1_N PF26576 41 - 100 5.7e-12 IBH1-like, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013101)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G09250
fragaria_vesca FvH4_6g07630 FvH4_6g07630
malus_domestica MD04G1192700.v1.1 MD12G1204600.v1.1
prunus_persica Prupe.6G311800_v2.0.a1
pyrus_communis pycom04g17000 pycom12g19250
rosa_chinensis RchiOBHm_Chr3g0457291
rosa_laevigata RLG00000025236
rosa_multiflora Rmu_sc0005442.1_g000012
rosa_roxburghii Rroxscaffold_6G00422010
rosa_rugosa Rorug03G0019700
rosa_samantha Rh3AG079800 Rh3BG081500 Rh3CG081900 Rh3DG083500
rosa_wichuraiana Rw3G006880

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 505
AccI GTMKAC 1 cut(s) 298
AccIII TCCGGA 1 cut(s) 162
AciI CCGC 6 cut(s) 5, 200, 254, 371, 500, 563
AclWI GGATC 3 cut(s) 108, 140, 187
AcoI YGGCCR 2 cut(s) 246, 564
AcuI CTGAAG 1 cut(s) 305
AcyI GRCGYC 1 cut(s) 398
AfiI CCNNNNNNNGG 1 cut(s) 450
AgsI TTSAA 2 cut(s) 93, 141
AjiI CACGTC 1 cut(s) 376
AjnI CCWGG 1 cut(s) 174
AluBI AGCT 3 cut(s) 148, 524, 544
AluI AGCT 3 cut(s) 148, 524, 544
Alw21I GWGCWC 1 cut(s) 559
Alw26I GTCTC 3 cut(s) 22, 208, 578
AlwI GGATC 3 cut(s) 108, 140, 187
Ama87I CYCGRG 1 cut(s) 43
Aor13HI TCCGGA 1 cut(s) 162
AoxI GGCC 3 cut(s) 6, 246, 564
ApeKI GCWGC 1 cut(s) 230
AspLEI GCGC 2 cut(s) 160, 505
AsuC2I CCSGG 3 cut(s) 208, 349, 444
AvaI CYCGRG 1 cut(s) 43
Bbv12I GWGCWC 1 cut(s) 559
BbvI GCAGC 1 cut(s) 242
BccI CCATC 1 cut(s) 102
BceAI ACGGC 2 cut(s) 233, 546
BciT130I CCWGG 1 cut(s) 176
BcnI CCSGG 3 cut(s) 208, 349, 444
BcoDI GTCTC 3 cut(s) 22, 208, 578
BfaI CTAG 1 cut(s) 476
BfoI RGCGCY 2 cut(s) 161, 506
BfuAI ACCTGC 1 cut(s) 505
BglI GCCNNNNNGGC 1 cut(s) 254
BisI GCNGC 5 cut(s) 6, 231, 255, 501, 564
BlpI GCTNAGC 1 cut(s) 308
BlsI GCNGC 5 cut(s) 7, 232, 256, 502, 565
Bme1390I CCNGG 4 cut(s) 176, 208, 349, 444
BmeT110I CYCGRG 1 cut(s) 43
BmgBI CACGTC 1 cut(s) 376
BmiI GGNNCC 2 cut(s) 441, 459
BmrFI CCNGG 4 cut(s) 176, 208, 349, 444
BmsI GCATC 1 cut(s) 501
BoxI GACNNNNGTC 2 cut(s) 33, 45
BplI GAGNNNNNCTC 2 cut(s) 533, 565
BpmI CTGGAG 1 cut(s) 527
Bpu1102I GCTNAGC 1 cut(s) 308
BpuEI CTTGAG 1 cut(s) 84
BpuMI CCSGG 3 cut(s) 208, 349, 444
BsaBI GATNNNNATC 3 cut(s) 81, 112, 184
BsaHI GRCGYC 1 cut(s) 398
BsaI GGTCTC 1 cut(s) 208
BsaJI CCNNGG 4 cut(s) 175, 207, 249, 348
BsaWI WCCGGW 2 cut(s) 162, 551
Bsc4I CCNNNNNNNGG 1 cut(s) 450
Bse118I RCCGGY 3 cut(s) 193, 357, 400
Bse1I ACTGG 2 cut(s) 433, 585
Bse8I GATNNNNATC 3 cut(s) 81, 112, 184
BseAI TCCGGA 1 cut(s) 162
BseBI CCWGG 1 cut(s) 176
BseDI CCNNGG 4 cut(s) 175, 207, 249, 348
BseGI GGATG 1 cut(s) 79
BseJI GATNNNNATC 3 cut(s) 81, 112, 184
BseLI CCNNNNNNNGG 1 cut(s) 450
BseMII CTCAG 3 cut(s) 281, 299, 316
BseNI ACTGG 2 cut(s) 433, 585
BseRI GAGGAG 4 cut(s) 307, 394, 403, 406
BseXI GCAGC 1 cut(s) 242
BsgI GTGCAG 1 cut(s) 428
BshFI GGCC 3 cut(s) 8, 248, 566
BsiHKAI GWGCWC 1 cut(s) 559
BsiHKCI CYCGRG 1 cut(s) 43
BslI CCNNNNNNNGG 1 cut(s) 450
BsmAI GTCTC 3 cut(s) 22, 208, 578
BsmBI CGTCTC 1 cut(s) 578
BsnI GGCC 3 cut(s) 8, 248, 566
Bso31I GGTCTC 1 cut(s) 208
BsoBI CYCGRG 1 cut(s) 43
Bsp1286I GDGCHC 1 cut(s) 559
Bsp13I TCCGGA 1 cut(s) 162
Bsp143I GATC 4 cut(s) 76, 113, 132, 179
Bsp1720I GCTNAGC 1 cut(s) 308
BspACI CCGC 6 cut(s) 5, 200, 254, 371, 500, 563
BspANI GGCC 3 cut(s) 8, 248, 566
BspCNI CTCAG 3 cut(s) 282, 300, 315
BspEI TCCGGA 1 cut(s) 162
BspLI GGNNCC 2 cut(s) 441, 459
BspMI ACCTGC 1 cut(s) 505
BspPI GGATC 3 cut(s) 108, 140, 187
BspTNI GGTCTC 1 cut(s) 208
BsrFI RCCGGY 3 cut(s) 193, 357, 400
BsrI ACTGG 2 cut(s) 433, 585
BssAI RCCGGY 3 cut(s) 193, 357, 400
BssECI CCNNGG 4 cut(s) 175, 207, 249, 348
BssMI GATC 4 cut(s) 76, 113, 132, 179
BssNI GRCGYC 1 cut(s) 398
Bst2UI CCWGG 1 cut(s) 176
BstACI GRCGYC 1 cut(s) 398
BstC8I GCNNGC 1 cut(s) 402
BstDEI CTNAG 5 cut(s) 144, 290, 302, 308, 428
BstDSI CCRYGG 1 cut(s) 249
BstEII GGTNACC 1 cut(s) 343
BstF5I GGATG 1 cut(s) 79
BstH2I RGCGCY 2 cut(s) 161, 506
BstHHI GCGC 2 cut(s) 160, 505
BstKTI GATC 4 cut(s) 79, 116, 135, 182
BstMAI GTCTC 3 cut(s) 22, 208, 578
BstMBI GATC 4 cut(s) 76, 113, 132, 179
BstMWI GCNNNNNNNGC 5 cut(s) 254, 406, 511, 530, 563
BstNI CCWGG 1 cut(s) 176
BstPAI GACNNNNGTC 2 cut(s) 33, 45
BstPI GGTNACC 1 cut(s) 343
BstSCI CCNGG 4 cut(s) 174, 206, 347, 442
BstV1I GCAGC 1 cut(s) 242
BstX2I RGATCY 2 cut(s) 113, 132
BstYI RGATCY 2 cut(s) 113, 132
BsuRI GGCC 3 cut(s) 8, 248, 566
BtgI CCRYGG 1 cut(s) 249
BtrI CACGTC 1 cut(s) 376
BtsCI GGATG 1 cut(s) 79
BveI ACCTGC 1 cut(s) 505
Cac8I GCNNGC 1 cut(s) 402
CfoI GCGC 2 cut(s) 160, 505
Cfr10I RCCGGY 3 cut(s) 193, 357, 400
CseI GACGC 1 cut(s) 406
DdeI CTNAG 5 cut(s) 144, 290, 302, 308, 428
DpnI GATC 4 cut(s) 78, 115, 134, 181
DpnII GATC 4 cut(s) 76, 113, 132, 179
EaeI YGGCCR 2 cut(s) 246, 564
EciI GGCGGA 1 cut(s) 386
Eco31I GGTCTC 1 cut(s) 208
Eco57I CTGAAG 1 cut(s) 305
Eco88I CYCGRG 1 cut(s) 43
Eco91I GGTNACC 1 cut(s) 343
EcoO65I GGTNACC 1 cut(s) 343
EcoRII CCWGG 1 cut(s) 174
Esp3I CGTCTC 1 cut(s) 578
FaiI YATR 2 cut(s) 497, 527
FblI GTMKAC 1 cut(s) 298
Fnu4HI GCNGC 5 cut(s) 6, 231, 255, 501, 564
FokI GGATG 1 cut(s) 86
Fsp4HI GCNGC 5 cut(s) 6, 231, 255, 501, 564
FspBI CTAG 1 cut(s) 476
GlaI GCGC 2 cut(s) 159, 504
GluI GCNGC 5 cut(s) 6, 231, 255, 501, 564
GsuI CTGGAG 1 cut(s) 527
HaeII RGCGCY 2 cut(s) 161, 506
HaeIII GGCC 3 cut(s) 8, 248, 566
HgaI GACGC 1 cut(s) 406
HhaI GCGC 2 cut(s) 160, 505
Hin1I GRCGYC 1 cut(s) 398
Hin6I GCGC 2 cut(s) 158, 503
HinP1I GCGC 2 cut(s) 158, 503
HincII GTYRAC 1 cut(s) 299
HindII GTYRAC 1 cut(s) 299
HinfI GANTC 7 cut(s) 41, 46, 82, 268, 286, 295, 300
Hpy166II GTNNAC 1 cut(s) 299
Hpy188I TCNGA 5 cut(s) 81, 118, 291, 324, 537
Hpy188III TCNNGA 5 cut(s) 19, 38, 163, 220, 476
Hpy8I GTNNAC 1 cut(s) 299
Hpy99I CGWCG 2 cut(s) 63, 193
HpyAV CCTTC 4 cut(s) 160, 217, 448, 482
HpyCH4IV ACGT 2 cut(s) 58, 375
HpyCH4V TGCA 2 cut(s) 409, 514
HpyF10VI GCNNNNNNNGC 5 cut(s) 254, 406, 511, 530, 563
HpyF3I CTNAG 5 cut(s) 144, 290, 302, 308, 428
HpySE526I ACGT 2 cut(s) 58, 375
Hsp92I GRCGYC 1 cut(s) 398
HspAI GCGC 2 cut(s) 158, 503
Kpn2I TCCGGA 1 cut(s) 162
KroI GCCGGC 1 cut(s) 400
KroNI GCCGGC 1 cut(s) 402
Kzo9I GATC 4 cut(s) 76, 113, 132, 179
LmnI GCTCC 5 cut(s) 165, 276, 463, 541, 562
Lsp1109I GCAGC 1 cut(s) 242
LweI GCATC 1 cut(s) 501
MaeI CTAG 1 cut(s) 476
MaeII ACGT 2 cut(s) 58, 375
MaeIII GTNAC 1 cut(s) 343
MalI GATC 4 cut(s) 78, 115, 134, 181
MboI GATC 4 cut(s) 76, 113, 132, 179
MboII GAAGA 2 cut(s) 424, 491
MflI RGATCY 2 cut(s) 113, 132
MhlI GDGCHC 1 cut(s) 559
MlyI GAGTC 5 cut(s) 35, 55, 262, 294, 304
MroI TCCGGA 1 cut(s) 162
MroNI GCCGGC 1 cut(s) 400
MseI TTAA 1 cut(s) 420
MspR9I CCNGG 4 cut(s) 176, 208, 349, 444
MvaI CCWGG 1 cut(s) 176
MwoI GCNNNNNNNGC 5 cut(s) 254, 406, 511, 530, 563
NaeI GCCGGC 1 cut(s) 402
NciI CCSGG 3 cut(s) 208, 349, 444
NdeII GATC 4 cut(s) 76, 113, 132, 179
NgoMIV GCCGGC 1 cut(s) 400
NlaIV GGNNCC 2 cut(s) 441, 459
PaeR7I CTCGAG 1 cut(s) 43
PcsI WCGNNNNNNNCGW 2 cut(s) 17, 55
PdiI GCCGGC 1 cut(s) 402
PfeI GAWTC 2 cut(s) 82, 286
PkrI GCNGC 5 cut(s) 7, 232, 256, 502, 565
PleI GAGTC 5 cut(s) 35, 54, 262, 294, 303
PpsI GAGTC 5 cut(s) 35, 54, 262, 294, 303
PshAI GACNNNNGTC 2 cut(s) 33, 45
Psp6I CCWGG 1 cut(s) 174
PspEI GGTNACC 1 cut(s) 343
PspGI CCWGG 1 cut(s) 174
PspN4I GGNNCC 2 cut(s) 441, 459
PspXI VCTCGAGB 1 cut(s) 43
PsuI RGATCY 2 cut(s) 113, 132
SalI GTCGAC 1 cut(s) 297
SaqAI TTAA 1 cut(s) 420
SatI GCNGC 5 cut(s) 6, 231, 255, 501, 564
Sau3AI GATC 4 cut(s) 76, 113, 132, 179
SchI GAGTC 5 cut(s) 35, 55, 262, 294, 304
ScrFI CCNGG 4 cut(s) 176, 208, 349, 444
SduI GDGCHC 1 cut(s) 559
SetI ASST 9 cut(s) 61, 150, 171, 378, 426, 474, 519, 526, 546
SfaNI GCATC 1 cut(s) 501
Sfr274I CTCGAG 1 cut(s) 43
SlaI CTCGAG 1 cut(s) 43
SmlI CTYRAG 2 cut(s) 43, 99
SmoI CTYRAG 2 cut(s) 43, 99
SsiI CCGC 6 cut(s) 5, 200, 254, 371, 500, 563
SspMI CTAG 1 cut(s) 476
StyD4I CCNGG 4 cut(s) 174, 206, 347, 442
TaiI ACGT 2 cut(s) 61, 378
TaqI TCGA 6 cut(s) 20, 44, 61, 69, 298, 520
TauI GCSGC 4 cut(s) 8, 257, 503, 566
TfiI GAWTC 2 cut(s) 82, 286
Tru1I TTAA 1 cut(s) 420
Tru9I TTAA 1 cut(s) 420
TseI GCWGC 1 cut(s) 230
TspGWI ACGGA 3 cut(s) 145, 450, 554
XbaI TCTAGA 1 cut(s) 475
XhoI CTCGAG 1 cut(s) 43
XmiI GTMKAC 1 cut(s) 298
XspI CTAG 1 cut(s) 476
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.