Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0016075

Physical Location & Seq

Genomic Coordinates Forward (+)

3189301 .. 3190242

Gene Structure 942 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G09815.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 375 bp

ATGGCGACGACGGCGAAGAATTTGAAGGGTTTCTACAAGCAGACTAAAAGCAATATCACCGGAGGTATCTCCAAGTCCAAGCCTTCTTCCCGGAAAGTGGCTCCCAAACACGCGGCGGCTCAAGGTTCTGATGTTACCCAGCCCGCCGCATTGATTTCACACGGCTCCGTCGATCTCAACGAGGATTATGACAAGGAGGAGGAGATGCTTAGACAATTTGACATGAACATCACTTATGGTCCGTGCCTGGGTATGACGAGACTTGATCGATGGGAGCGTGCAGTGCGTCTTGGGATGAACCCTCCCAATGAAATCGAGAAGCTTTTGAAGACCGGGAAAGTCCAGCAAGATTGTCTGTGGCAAGGTCGTGTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000731 GO:0003674 GO:0003824 GO:0003887 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006281 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019438 GO:0030894 GO:0031974 GO:0031981 GO:0032991 GO:0032993 GO:0033554 GO:0034061 GO:0034641 GO:0034645 GO:0034654 GO:0042575 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043596 GO:0043601 GO:0043625 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0050896 GO:0051716 GO:0061695 GO:0070013 GO:0071704 GO:0071897 GO:0090304 GO:0140097 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03030 ko03410 ko03420 ko03430 ko03440 ko05166 map00230 map00240 map01100 map03030 map03410 map03420 map03430 map03440 map05166

Pfam Domains

Protein Families

DNA_pol_delta_4

Protein Analysis

124

Amino Acids

13.82

Weight (kDa)

9.33

Isoelectric Point (pI)

50.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DNA_pol_delta_4	PF04081	60 - 115	1.5e-21	DNA polymerase delta, subunit 4

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0016075)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09815
fragaria_vesca	FvH4_1g22780
malus_domestica	MD07G1311000.v1.1
prunus_persica	Prupe.2G330200_v2.0.a1
pyrus_communis	pycom07g28330
rosa_chinensis	RchiOBHm_Chr2g0117101
rosa_laevigata	RLG00000018329
rosa_multiflora	Rmu_sc0027522.1_g000001
rosa_roxburghii	Rroxscaffold_2G00126710
rosa_rugosa	Rorug02G0210500
rosa_samantha	Rh2AG266200 Rh2BG278200 Rh2DG273400 Rh2DG292500
rosa_wichuraiana	Rw2G021010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	113
AciI	CCGC	4 cut(s)	113, 116, 144, 147
AcsI	RAATTY	1 cut(s)	19
AfiI	CCNNNNNNNGG	2 cut(s)	97, 248
AgsI	TTSAA	2 cut(s)	25, 328
AjnI	CCWGG	1 cut(s)	246
AluBI	AGCT	1 cut(s)	322
AluI	AGCT	1 cut(s)	322
Alw26I	GTCTC	1 cut(s)	253
ApoI	RAATTY	1 cut(s)	19
Asp700I	GAANNNNTTC	1 cut(s)	29
AspS9I	GGNCC	1 cut(s)	239
AsuC2I	CCSGG	2 cut(s)	91, 334
AsuHPI	GGTGA	1 cut(s)	49
AvaII	GGWCC	1 cut(s)	239
BarI	GAAGNNNNNNTAC	2 cut(s)	17, 49
BbsI	GAAGAC	1 cut(s)	335
BccI	CCATC	1 cut(s)	264
BceAI	ACGGC	2 cut(s)	27, 178
BciT130I	CCWGG	1 cut(s)	248
BcnI	CCSGG	2 cut(s)	91, 334
BcoDI	GTCTC	1 cut(s)	253
BfaI	CTAG	1 cut(s)	373
BisI	GCNGC	3 cut(s)	114, 117, 147
BlsI	GCNGC	3 cut(s)	115, 118, 148
Bme1390I	CCNGG	3 cut(s)	91, 248, 334
Bme18I	GGWCC	1 cut(s)	239
BmgT120I	GGNCC	1 cut(s)	239
BmiI	GGNNCC	2 cut(s)	102, 166
BmrFI	CCNGG	3 cut(s)	91, 248, 334
BmsI	GCATC	1 cut(s)	195
BpiI	GAAGAC	1 cut(s)	335
BpuEI	CTTGAG	1 cut(s)	105
BpuMI	CCSGG	2 cut(s)	91, 334
Bsa29I	ATCGAT	1 cut(s)	268
BsaJI	CCNNGG	1 cut(s)	247
BsaWI	WCCGGW	1 cut(s)	59
Bsc4I	CCNNNNNNNGG	2 cut(s)	97, 248
BseBI	CCWGG	1 cut(s)	248
BseCI	ATCGAT	1 cut(s)	268
BseDI	CCNNGG	1 cut(s)	247
BseGI	GGATG	1 cut(s)	300
BseLI	CCNNNNNNNGG	2 cut(s)	97, 248
BseRI	GAGGAG	2 cut(s)	212, 215
BseYI	CCCAGC	1 cut(s)	138
BsgI	GTGCAG	1 cut(s)	300
Bsh1236I	CGCG	1 cut(s)	113
BshVI	ATCGAT	1 cut(s)	268
BsiSI	CCGG	3 cut(s)	60, 91, 333
BslI	CCNNNNNNNGG	2 cut(s)	97, 248
BsmAI	GTCTC	1 cut(s)	253
Bsp143I	GATC	2 cut(s)	172, 265
BspACI	CCGC	4 cut(s)	113, 116, 144, 147
BspDI	ATCGAT	1 cut(s)	268
BspFNI	CGCG	1 cut(s)	113
BspLI	GGNNCC	2 cut(s)	102, 166
BssECI	CCNNGG	1 cut(s)	247
BssMI	GATC	2 cut(s)	172, 265
Bst2UI	CCWGG	1 cut(s)	248
BstC8I	GCNNGC	2 cut(s)	144, 279
BstDEI	CTNAG	1 cut(s)	209
BstF5I	GGATG	1 cut(s)	300
BstFNI	CGCG	1 cut(s)	113
BstKTI	GATC	2 cut(s)	175, 268
BstMAI	GTCTC	1 cut(s)	253
BstMBI	GATC	2 cut(s)	172, 265
BstMWI	GCNNNNNNNGC	2 cut(s)	11, 283
BstNI	CCWGG	1 cut(s)	248
BstSCI	CCNGG	3 cut(s)	89, 246, 332
BstUI	CGCG	1 cut(s)	113
BstV2I	GAAGAC	1 cut(s)	335
Bsu15I	ATCGAT	1 cut(s)	268
BsuTUI	ATCGAT	1 cut(s)	268
BtsCI	GGATG	1 cut(s)	300
BtsI	GCAGTG	1 cut(s)	288
BtsIMutI	CAGTG	1 cut(s)	288
Cac8I	GCNNGC	2 cut(s)	144, 279
Cfr13I	GGNCC	1 cut(s)	239
ClaI	ATCGAT	1 cut(s)	268
CseI	GACGC	1 cut(s)	275
CviAII	CATG	1 cut(s)	223
CviJI	RGCY	6 cut(s)	82, 101, 119, 142, 165, 322
CviKI_1	RGCY	6 cut(s)	82, 101, 119, 142, 165, 322
DdeI	CTNAG	1 cut(s)	209
DpnI	GATC	2 cut(s)	174, 267
DpnII	GATC	2 cut(s)	172, 265
Eco47I	GGWCC	1 cut(s)	239
EcoRII	CCWGG	1 cut(s)	246
FaeI	CATG	1 cut(s)	226
FaiI	YATR	4 cut(s)	189, 224, 237, 254
FatI	CATG	1 cut(s)	222
FauI	CCCGC	1 cut(s)	151
Fnu4HI	GCNGC	3 cut(s)	114, 117, 147
FokI	GGATG	1 cut(s)	307
Fsp4HI	GCNGC	3 cut(s)	114, 117, 147
FspBI	CTAG	1 cut(s)	373
GluI	GCNGC	3 cut(s)	114, 117, 147
GsaI	CCCAGC	1 cut(s)	142
HapII	CCGG	3 cut(s)	60, 91, 333
HgaI	GACGC	1 cut(s)	275
Hin1II	CATG	1 cut(s)	226
HindIII	AAGCTT	1 cut(s)	320
HpaII	CCGG	3 cut(s)	60, 91, 333
HphI	GGTGA	1 cut(s)	49
Hpy188I	TCNGA	1 cut(s)	130
Hpy188III	TCNNGA	1 cut(s)	316
Hpy99I	CGWCG	3 cut(s)	10, 13, 173
HpyAV	CCTTC	2 cut(s)	19, 93
HpyCH4V	TGCA	1 cut(s)	281
HpyF10VI	GCNNNNNNNGC	2 cut(s)	11, 283
HpyF3I	CTNAG	1 cut(s)	209
Hsp92II	CATG	1 cut(s)	226
Kzo9I	GATC	2 cut(s)	172, 265
LmnI	GCTCC	3 cut(s)	106, 170, 274
LpnPI	CCDG	7 cut(s)	73, 104, 152, 233, 260, 346, 356
LweI	GCATC	1 cut(s)	195
MaeI	CTAG	1 cut(s)	373
MaeIII	GTNAC	1 cut(s)	133
MalI	GATC	2 cut(s)	174, 267
MboI	GATC	2 cut(s)	172, 265
MboII	GAAGA	3 cut(s)	28, 78, 340
MluCI	AATT	2 cut(s)	19, 215
MnlI	CCTC	5 cut(s)	56, 175, 190, 193, 312
MroXI	GAANNNNTTC	1 cut(s)	29
MspI	CCGG	3 cut(s)	60, 91, 333
MspR9I	CCNGG	3 cut(s)	91, 248, 334
MvaI	CCWGG	1 cut(s)	248
MvnI	CGCG	1 cut(s)	113
MwoI	GCNNNNNNNGC	2 cut(s)	11, 283
NciI	CCSGG	2 cut(s)	91, 334
NdeII	GATC	2 cut(s)	172, 265
NlaIII	CATG	1 cut(s)	226
NlaIV	GGNNCC	2 cut(s)	102, 166
PcsI	WCGNNNNNNNCGW	3 cut(s)	168, 177, 274
PdmI	GAANNNNTTC	1 cut(s)	29
PfoI	TCCNGGA	1 cut(s)	89
PkrI	GCNGC	3 cut(s)	115, 118, 148
Psp6I	CCWGG	1 cut(s)	246
PspFI	CCCAGC	1 cut(s)	138
PspGI	CCWGG	1 cut(s)	246
PspN4I	GGNNCC	2 cut(s)	102, 166
PspPI	GGNCC	1 cut(s)	239
SatI	GCNGC	3 cut(s)	114, 117, 147
Sau3AI	GATC	2 cut(s)	172, 265
Sau96I	GGNCC	1 cut(s)	239
ScrFI	CCNGG	3 cut(s)	91, 248, 334
SetI	ASST	4 cut(s)	67, 127, 324, 367
SfaNI	GCATC	1 cut(s)	195
SinI	GGWCC	1 cut(s)	239
SmlI	CTYRAG	1 cut(s)	120
SmoI	CTYRAG	1 cut(s)	120
Sse9I	AATT	2 cut(s)	19, 215
SsiI	CCGC	4 cut(s)	113, 116, 144, 147
SspMI	CTAG	1 cut(s)	373
StyD4I	CCNGG	3 cut(s)	89, 246, 332
TaqI	TCGA	3 cut(s)	171, 268, 315
TasI	AATT	2 cut(s)	19, 215
TauI	GCSGC	3 cut(s)	116, 119, 149
TscAI	CASTG	1 cut(s)	288
TspDTI	ATGAA	3 cut(s)	239, 311, 324
TspGWI	ACGGA	2 cut(s)	157, 231
TspRI	CASTG	1 cut(s)	288
VpaK11BI	GGWCC	1 cut(s)	239
XapI	RAATTY	1 cut(s)	19
XmnI	GAANNNNTTC	1 cut(s)	29
XspI	CTAG	1 cut(s)	373

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.