Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0016075

Physical Location & Seq

Genomic Coordinates Reverse (-)

36597803 .. 36604971

Gene Structure 7169 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1311000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

ATGGCATCAGGATCAAAAGCAGAGAATATGAAGGGCTTCTACAGGCAAAGGAAAAGCAACAGTAGCATCGGCGGGGGTATCTCTAAGAAGAAAAAATCCCGATCGCCCGCTCACCCAAAAGCTGCTGCCGCTGCCTCTTTCGGCTCGGATGTCACTCAACCCACCGCCCTTATTTCACACGGTTCTCCAGACCTCAAAGATGATTATGACGAGCAAGAAGAGCTACTGAGGAAATTTGATATGAACCTGGCATACGGACCATGCATTGGGATGACCAGACTTGCACGGTTGGAGAGGGCTTGCAGTCTAGGTTTGAACCCTCCTAAAGAAGTGGAGAGTCTTTTGAAAGGTGGCAAAGTTCGCTCTGAGTGTTTGTGGGATGGCCGCATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000731 GO:0003674 GO:0003824 GO:0003887 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006281 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019438 GO:0030894 GO:0031974 GO:0031981 GO:0032991 GO:0032993 GO:0033554 GO:0034061 GO:0034641 GO:0034645 GO:0034654 GO:0042575 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043596 GO:0043601 GO:0043625 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0050896 GO:0051716 GO:0061695 GO:0070013 GO:0071704 GO:0071897 GO:0090304 GO:0140097 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03030 ko03410 ko03420 ko03430 ko03440 ko05166 map00230 map00240 map01100 map03030 map03410 map03420 map03430 map03440 map05166

Pfam Domains

Protein Families

DNA_pol_delta_4

Protein Analysis

131

Amino Acids

14.1

Weight (kDa)

9.48

Isoelectric Point (pI)

50.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DNA_pol_delta_4	PF04081	66 - 116	8e-18	DNA polymerase delta, subunit 4

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0016075)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09815
fragaria_vesca	FvH4_1g22780
malus_domestica	MD07G1311000.v1.1
prunus_persica	Prupe.2G330200_v2.0.a1
pyrus_communis	pycom07g28330
rosa_chinensis	RchiOBHm_Chr2g0117101
rosa_laevigata	RLG00000018329
rosa_multiflora	Rmu_sc0027522.1_g000001
rosa_roxburghii	Rroxscaffold_2G00126710
rosa_rugosa	Rorug02G0210500
rosa_samantha	Rh2AG266200 Rh2BG278200 Rh2DG273400 Rh2DG292500
rosa_wichuraiana	Rw2G021010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	266
AccBSI	CCGCTC	1 cut(s)	110
AciI	CCGC	5 cut(s)	72, 108, 129, 165, 385
AclWI	GGATC	1 cut(s)	19
AcoI	YGGCCR	1 cut(s)	382
AcsI	RAATTY	1 cut(s)	233
AfiI	CCNNNNNNNGG	1 cut(s)	266
AgsI	TTSAA	2 cut(s)	316, 346
AjnI	CCWGG	1 cut(s)	246
AluBI	AGCT	2 cut(s)	122, 223
AluI	AGCT	2 cut(s)	122, 223
AlwI	GGATC	1 cut(s)	19
AoxI	GGCC	1 cut(s)	382
ApeKI	GCWGC	3 cut(s)	122, 125, 131
ApoI	RAATTY	1 cut(s)	233
Asp700I	GAANNNNTTC	1 cut(s)	35
AspS9I	GGNCC	1 cut(s)	257
AsuHPI	GGTGA	1 cut(s)	104
AvaII	GGWCC	1 cut(s)	257
BarI	GAAGNNNNNNTAC	2 cut(s)	23, 55
BbvI	GCAGC	3 cut(s)	109, 112, 118
BccI	CCATC	1 cut(s)	374
BciT130I	CCWGG	1 cut(s)	248
BfaI	CTAG	1 cut(s)	308
BfmI	CTRYAG	1 cut(s)	40
BisI	GCNGC	5 cut(s)	123, 126, 129, 132, 385
BlsI	GCNGC	5 cut(s)	124, 127, 130, 133, 386
Bme1390I	CCNGG	1 cut(s)	248
Bme18I	GGWCC	1 cut(s)	257
BmgT120I	GGNCC	1 cut(s)	257
BmrFI	CCNGG	1 cut(s)	248
BmsI	GCATC	2 cut(s)	14, 75
BpmI	CTGGAG	1 cut(s)	171
Bsc4I	CCNNNNNNNGG	1 cut(s)	266
BseBI	CCWGG	1 cut(s)	248
BseGI	GGATG	3 cut(s)	154, 276, 385
BseLI	CCNNNNNNNGG	1 cut(s)	266
BseMII	CTCAG	2 cut(s)	218, 357
BseXI	GCAGC	3 cut(s)	109, 112, 118
Bsh1285I	CGRYCG	1 cut(s)	104
BshFI	GGCC	1 cut(s)	384
BsiEI	CGRYCG	1 cut(s)	104
BslI	CCNNNNNNNGG	1 cut(s)	266
BsnI	GGCC	1 cut(s)	384
Bsp143I	GATC	2 cut(s)	11, 101
BspACI	CCGC	5 cut(s)	72, 108, 129, 165, 385
BspANI	GGCC	1 cut(s)	384
BspCNI	CTCAG	2 cut(s)	219, 358
BspPI	GGATC	1 cut(s)	19
BspQI	GCTCTTC	1 cut(s)	213
BsrBI	CCGCTC	1 cut(s)	110
BssMI	GATC	2 cut(s)	11, 101
Bst2UI	CCWGG	1 cut(s)	248
Bst4CI	ACNGT	3 cut(s)	62, 182, 288
Bst6I	CTCTTC	1 cut(s)	213
BstC8I	GCNNGC	2 cut(s)	108, 301
BstDEI	CTNAG	3 cut(s)	84, 227, 366
BstF5I	GGATG	3 cut(s)	154, 276, 385
BstKTI	GATC	2 cut(s)	14, 104
BstMBI	GATC	2 cut(s)	11, 101
BstMCI	CGRYCG	1 cut(s)	104
BstMWI	GCNNNNNNNGC	5 cut(s)	63, 128, 131, 220, 360
BstNI	CCWGG	1 cut(s)	248
BstSCI	CCNGG	1 cut(s)	246
BstSFI	CTRYAG	1 cut(s)	40
BstV1I	GCAGC	3 cut(s)	109, 112, 118
BsuRI	GGCC	1 cut(s)	384
BtsCI	GGATG	3 cut(s)	154, 276, 385
Cac8I	GCNNGC	2 cut(s)	108, 301
Cfr13I	GGNCC	1 cut(s)	257
CviAII	CATG	1 cut(s)	261
CviJI	RGCY	6 cut(s)	36, 122, 144, 223, 299, 384
CviKI_1	RGCY	6 cut(s)	36, 122, 144, 223, 299, 384
DdeI	CTNAG	3 cut(s)	84, 227, 366
DpnI	GATC	2 cut(s)	13, 103
DpnII	GATC	2 cut(s)	11, 101
EaeI	YGGCCR	1 cut(s)	382
Eam1104I	CTCTTC	1 cut(s)	213
EarI	CTCTTC	1 cut(s)	213
Eco47I	GGWCC	1 cut(s)	257
EcoRII	CCWGG	1 cut(s)	246
EcoT22I	ATGCAT	1 cut(s)	266
FaeI	CATG	1 cut(s)	264
FaiI	YATR	5 cut(s)	29, 207, 242, 253, 262
FatI	CATG	1 cut(s)	260
FauI	CCCGC	2 cut(s)	65, 115
Fnu4HI	GCNGC	5 cut(s)	123, 126, 129, 132, 385
FokI	GGATG	2 cut(s)	161, 283
Fsp4HI	GCNGC	5 cut(s)	123, 126, 129, 132, 385
FspBI	CTAG	1 cut(s)	308
GluI	GCNGC	5 cut(s)	123, 126, 129, 132, 385
GsuI	CTGGAG	1 cut(s)	171
HaeIII	GGCC	1 cut(s)	384
Hin1II	CATG	1 cut(s)	264
HinfI	GANTC	1 cut(s)	337
HphI	GGTGA	1 cut(s)	104
Hpy188I	TCNGA	2 cut(s)	148, 367
Hpy188III	TCNNGA	3 cut(s)	9, 99, 188
HpyAV	CCTTC	1 cut(s)	25
HpyCH4III	ACNGT	3 cut(s)	62, 182, 288
HpyCH4V	TGCA	3 cut(s)	264, 284, 303
HpyF10VI	GCNNNNNNNGC	5 cut(s)	63, 128, 131, 220, 360
HpyF3I	CTNAG	3 cut(s)	84, 227, 366
Hsp92II	CATG	1 cut(s)	264
Kzo9I	GATC	2 cut(s)	11, 101
LguI	GCTCTTC	1 cut(s)	213
LpnPI	CCDG	5 cut(s)	28, 201, 233, 260, 289
Lsp1109I	GCAGC	3 cut(s)	109, 112, 118
LweI	GCATC	2 cut(s)	14, 75
MaeI	CTAG	1 cut(s)	308
MaeIII	GTNAC	1 cut(s)	151
MalI	GATC	2 cut(s)	13, 103
MbiI	CCGCTC	1 cut(s)	110
MboI	GATC	2 cut(s)	11, 101
MboII	GAAGA	2 cut(s)	100, 230
MluCI	AATT	1 cut(s)	233
MlyI	GAGTC	1 cut(s)	346
MmeI	TCCRAC	1 cut(s)	270
MnlI	CCTC	5 cut(s)	145, 203, 222, 288, 330
Mph1103I	ATGCAT	1 cut(s)	266
MroXI	GAANNNNTTC	1 cut(s)	35
MslI	CAYNNNNRTG	1 cut(s)	269
MspA1I	CMGCKG	1 cut(s)	131
MspR9I	CCNGG	1 cut(s)	248
MvaI	CCWGG	1 cut(s)	248
MwoI	GCNNNNNNNGC	5 cut(s)	63, 128, 131, 220, 360
NdeII	GATC	2 cut(s)	11, 101
NlaIII	CATG	1 cut(s)	264
NmuCI	GTSAC	1 cut(s)	151
NsiI	ATGCAT	1 cut(s)	266
PciSI	GCTCTTC	1 cut(s)	213
PdmI	GAANNNNTTC	1 cut(s)	35
PflMI	CCANNNNNTGG	1 cut(s)	266
PkrI	GCNGC	5 cut(s)	124, 127, 130, 133, 386
Ple19I	CGATCG	1 cut(s)	104
PleI	GAGTC	1 cut(s)	345
PpsI	GAGTC	1 cut(s)	345
Psp6I	CCWGG	1 cut(s)	246
PspGI	CCWGG	1 cut(s)	246
PspPI	GGNCC	1 cut(s)	257
PsrI	GAACNNNNNNTAC	2 cut(s)	236, 268
PvuI	CGATCG	1 cut(s)	104
RseI	CAYNNNNRTG	1 cut(s)	269
SapI	GCTCTTC	1 cut(s)	213
SatI	GCNGC	5 cut(s)	123, 126, 129, 132, 385
Sau3AI	GATC	2 cut(s)	11, 101
Sau96I	GGNCC	1 cut(s)	257
SchI	GAGTC	1 cut(s)	346
ScrFI	CCNGG	1 cut(s)	248
SetI	ASST	6 cut(s)	124, 195, 225, 249, 313, 352
SfaNI	GCATC	2 cut(s)	14, 75
SfcI	CTRYAG	1 cut(s)	40
SinI	GGWCC	1 cut(s)	257
SmiMI	CAYNNNNRTG	1 cut(s)	269
Sse9I	AATT	1 cut(s)	233
SsiI	CCGC	5 cut(s)	72, 108, 129, 165, 385
SspMI	CTAG	1 cut(s)	308
StyD4I	CCNGG	1 cut(s)	246
TaaI	ACNGT	3 cut(s)	62, 182, 288
TasI	AATT	1 cut(s)	233
TauI	GCSGC	2 cut(s)	131, 387
TseFI	GTSAC	1 cut(s)	151
TseI	GCWGC	3 cut(s)	122, 125, 131
Tsp45I	GTSAC	1 cut(s)	151
TspDTI	ATGAA	2 cut(s)	44, 257
TspGWI	ACGGA	1 cut(s)	270
Van91I	CCANNNNNTGG	1 cut(s)	266
VpaK11BI	GGWCC	1 cut(s)	257
XapI	RAATTY	1 cut(s)	233
XmnI	GAANNNNTTC	1 cut(s)	35
XspI	CTAG	1 cut(s)	308
Zsp2I	ATGCAT	1 cut(s)	266

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.