Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0016075

Physical Location & Seq

Genomic Coordinates Reverse (-)

31048625 .. 31049177

Gene Structure 553 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG266200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

ATGGCGACGAGATCGAATATGAAGGGTTTCTACAAACAAAAGAAGAGCACCATCGGCGGTGGTGTCTCCAAAAAGAAGAAAACCCAAGGCGCTTCCGCCGCCGCCGCCGCCTCTTTGGGCTCCGACGTCACCCAACCCTCCGCCCTTATCTCCCACGGCGCTCCTGATCTCAAAGATGATTATGATGAGCAAGAGGAGGTGCTGAGGCAATTTGATTTGAACACGGCGTATGGGCCGTGTTTTGGGATCACCAGACTCGCAAGGTGGGAGCGTGCCTGCAAGCTGGGGATGGATCCTCCCAAGGAAGTGGAGAGTCTTTTGAAGAGTGGGAAGGTTCGACTCGAGTGCTTGTGGGATGGTCGCATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000731 GO:0003674 GO:0003824 GO:0003887 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006281 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019438 GO:0030894 GO:0031974 GO:0031981 GO:0032991 GO:0032993 GO:0033554 GO:0034061 GO:0034641 GO:0034645 GO:0034654 GO:0042575 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043596 GO:0043601 GO:0043625 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0050896 GO:0051716 GO:0061695 GO:0070013 GO:0071704 GO:0071897 GO:0090304 GO:0140097 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03030 ko03410 ko03420 ko03430 ko03440 ko05166 map00230 map00240 map01100 map03030 map03410 map03420 map03430 map03440 map05166

Pfam Domains

Protein Families

DNA_pol_delta_4

Protein Analysis

122

Amino Acids

13.31

Weight (kDa)

9.19

Isoelectric Point (pI)

44.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DNA_pol_delta_4	PF04081	59 - 108	1.3e-18	DNA polymerase delta, subunit 4

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0016075)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09815
fragaria_vesca	FvH4_1g22780
malus_domestica	MD07G1311000.v1.1
prunus_persica	Prupe.2G330200_v2.0.a1
pyrus_communis	pycom07g28330
rosa_chinensis	RchiOBHm_Chr2g0117101
rosa_laevigata	RLG00000018329
rosa_multiflora	Rmu_sc0027522.1_g000001
rosa_roxburghii	Rroxscaffold_2G00126710
rosa_rugosa	Rorug02G0210500
rosa_samantha	Rh2AG266200 Rh2BG278200 Rh2DG273400 Rh2DG292500
rosa_wichuraiana	Rw2G021010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	129
AciI	CCGC	7 cut(s)	57, 96, 99, 102, 105, 108, 141
AclWI	GGATC	3 cut(s)	254, 287, 300
AcyI	GRCGYC	1 cut(s)	126
AfiI	CCNNNNNNNGG	1 cut(s)	242
AgsI	TTSAA	2 cut(s)	220, 322
AluBI	AGCT	1 cut(s)	283
AluI	AGCT	1 cut(s)	283
Alw21I	GWGCWC	1 cut(s)	50
Alw26I	GTCTC	1 cut(s)	70
AlwI	GGATC	3 cut(s)	254, 287, 300
Ama87I	CYCGRG	1 cut(s)	341
AoxI	GGCC	1 cut(s)	233
Asp700I	GAANNNNTTC	1 cut(s)	26
AspLEI	GCGC	2 cut(s)	92, 161
AspS9I	GGNCC	1 cut(s)	233
AsuHPI	GGTGA	2 cut(s)	121, 241
AvaI	CYCGRG	1 cut(s)	341
BamHI	GGATCC	1 cut(s)	292
BanII	GRGCYC	1 cut(s)	122
BarI	GAAGNNNNNNTAC	2 cut(s)	14, 46
Bbv12I	GWGCWC	1 cut(s)	50
BbvCI	CCTCAGC	1 cut(s)	203
BccI	CCATC	3 cut(s)	59, 283, 350
BceAI	ACGGC	3 cut(s)	172, 220, 240
BcgI	CGANNNNNNTGC	2 cut(s)	327, 361
BcoDI	GTCTC	1 cut(s)	70
BfoI	RGCGCY	2 cut(s)	93, 162
BisI	GCNGC	4 cut(s)	99, 102, 105, 108
BlsI	GCNGC	4 cut(s)	100, 103, 106, 109
BmeT110I	CYCGRG	1 cut(s)	341
BmgT120I	GGNCC	1 cut(s)	233
BmiI	GGNNCC	2 cut(s)	121, 294
Bpu10I	CCTNAGC	1 cut(s)	203
BsaHI	GRCGYC	1 cut(s)	126
BsaJI	CCNNGG	3 cut(s)	85, 154, 300
Bsc4I	CCNNNNNNNGG	1 cut(s)	242
BseDI	CCNNGG	3 cut(s)	85, 154, 300
BseGI	GGATG	2 cut(s)	294, 361
BseLI	CCNNNNNNNGG	1 cut(s)	242
BseMII	CTCAG	1 cut(s)	194
BseRI	GAGGAG	1 cut(s)	209
BseYI	CCCAGC	1 cut(s)	283
BshFI	GGCC	1 cut(s)	235
BsiHKAI	GWGCWC	1 cut(s)	50
BsiHKCI	CYCGRG	1 cut(s)	341
BslI	CCNNNNNNNGG	1 cut(s)	242
BsmAI	GTCTC	1 cut(s)	70
BsnI	GGCC	1 cut(s)	235
BsoBI	CYCGRG	1 cut(s)	341
Bsp1286I	GDGCHC	2 cut(s)	50, 122
Bsp143I	GATC	4 cut(s)	11, 166, 246, 292
BspACI	CCGC	7 cut(s)	57, 96, 99, 102, 105, 108, 141
BspANI	GGCC	1 cut(s)	235
BspCNI	CTCAG	1 cut(s)	195
BspLI	GGNNCC	2 cut(s)	121, 294
BspPI	GGATC	3 cut(s)	254, 287, 300
BspQI	GCTCTTC	1 cut(s)	38
BssECI	CCNNGG	3 cut(s)	85, 154, 300
BssMI	GATC	4 cut(s)	11, 166, 246, 292
BssNI	GRCGYC	1 cut(s)	126
BssT1I	CCWWGG	2 cut(s)	85, 300
Bst6I	CTCTTC	2 cut(s)	38, 317
BstACI	GRCGYC	1 cut(s)	126
BstC8I	GCNNGC	3 cut(s)	273, 277, 281
BstDEI	CTNAG	1 cut(s)	203
BstDSI	CCRYGG	1 cut(s)	154
BstF5I	GGATG	2 cut(s)	294, 361
BstH2I	RGCGCY	2 cut(s)	93, 162
BstHHI	GCGC	2 cut(s)	92, 161
BstKTI	GATC	4 cut(s)	14, 169, 249, 295
BstMAI	GTCTC	1 cut(s)	70
BstMBI	GATC	4 cut(s)	11, 166, 246, 292
BstMWI	GCNNNNNNNGC	4 cut(s)	54, 98, 104, 107
BstX2I	RGATCY	1 cut(s)	292
BstXI	CCANNNNNNTGG	1 cut(s)	307
BstYI	RGATCY	1 cut(s)	292
BsuRI	GGCC	1 cut(s)	235
BtgI	CCRYGG	1 cut(s)	154
BtsCI	GGATG	2 cut(s)	294, 361
Cac8I	GCNNGC	3 cut(s)	273, 277, 281
CfoI	GCGC	2 cut(s)	92, 161
Cfr13I	GGNCC	1 cut(s)	233
CviJI	RGCY	3 cut(s)	120, 235, 283
CviKI_1	RGCY	3 cut(s)	120, 235, 283
DdeI	CTNAG	1 cut(s)	203
DpnI	GATC	4 cut(s)	13, 168, 248, 294
DpnII	GATC	4 cut(s)	11, 166, 246, 292
Eam1104I	CTCTTC	2 cut(s)	38, 317
EarI	CTCTTC	2 cut(s)	38, 317
EciI	GGCGGA	2 cut(s)	85, 130
Eco130I	CCWWGG	2 cut(s)	85, 300
Eco24I	GRGCYC	1 cut(s)	122
Eco88I	CYCGRG	1 cut(s)	341
EcoT14I	CCWWGG	2 cut(s)	85, 300
EcoT38I	GRGCYC	1 cut(s)	122
ErhI	CCWWGG	2 cut(s)	85, 300
FaiI	YATR	3 cut(s)	20, 183, 231
Fnu4HI	GCNGC	4 cut(s)	99, 102, 105, 108
FokI	GGATG	1 cut(s)	301
FriOI	GRGCYC	1 cut(s)	122
Fsp4HI	GCNGC	4 cut(s)	99, 102, 105, 108
GlaI	GCGC	2 cut(s)	91, 160
GluI	GCNGC	4 cut(s)	99, 102, 105, 108
GsaI	CCCAGC	1 cut(s)	287
HaeII	RGCGCY	2 cut(s)	93, 162
HaeIII	GGCC	1 cut(s)	235
HhaI	GCGC	2 cut(s)	92, 161
Hin1I	GRCGYC	1 cut(s)	126
Hin6I	GCGC	2 cut(s)	90, 159
HinP1I	GCGC	2 cut(s)	90, 159
HinfI	GANTC	3 cut(s)	255, 313, 339
HphI	GGTGA	2 cut(s)	121, 241
Hpy188I	TCNGA	1 cut(s)	124
Hpy188III	TCNNGA	1 cut(s)	164
Hpy99I	CGWCG	2 cut(s)	10, 128
HpyAV	CCTTC	2 cut(s)	16, 325
HpyCH4IV	ACGT	1 cut(s)	126
HpyCH4V	TGCA	1 cut(s)	279
HpyF10VI	GCNNNNNNNGC	4 cut(s)	54, 98, 104, 107
HpyF3I	CTNAG	1 cut(s)	203
HpySE526I	ACGT	1 cut(s)	126
Hsp92I	GRCGYC	1 cut(s)	126
HspAI	GCGC	2 cut(s)	90, 159
Kzo9I	GATC	4 cut(s)	11, 166, 246, 292
LguI	GCTCTTC	1 cut(s)	38
LmnI	GCTCC	3 cut(s)	125, 166, 268
LpnPI	CCDG	4 cut(s)	177, 265, 269, 289
MaeII	ACGT	1 cut(s)	126
MaeIII	GTNAC	1 cut(s)	127
MalI	GATC	4 cut(s)	13, 168, 248, 294
MboI	GATC	4 cut(s)	11, 166, 246, 292
MboII	GAAGA	3 cut(s)	55, 88, 334
MflI	RGATCY	1 cut(s)	292
MhlI	GDGCHC	2 cut(s)	50, 122
MluCI	AATT	1 cut(s)	209
MlyI	GAGTC	3 cut(s)	249, 322, 333
MmeI	TCCRAC	1 cut(s)	147
MnlI	CCTC	6 cut(s)	121, 148, 187, 190, 198, 306
MroXI	GAANNNNTTC	1 cut(s)	26
MwoI	GCNNNNNNNGC	4 cut(s)	54, 98, 104, 107
NdeII	GATC	4 cut(s)	11, 166, 246, 292
NlaIV	GGNNCC	2 cut(s)	121, 294
NmuCI	GTSAC	1 cut(s)	127
PaeR7I	CTCGAG	1 cut(s)	341
PciSI	GCTCTTC	1 cut(s)	38
PdmI	GAANNNNTTC	1 cut(s)	26
PkrI	GCNGC	4 cut(s)	100, 103, 106, 109
PleI	GAGTC	3 cut(s)	249, 321, 333
PpsI	GAGTC	3 cut(s)	249, 321, 333
PspFI	CCCAGC	1 cut(s)	283
PspN4I	GGNNCC	2 cut(s)	121, 294
PspPI	GGNCC	1 cut(s)	233
PspXI	VCTCGAGB	1 cut(s)	341
PsuI	RGATCY	1 cut(s)	292
SapI	GCTCTTC	1 cut(s)	38
SatI	GCNGC	4 cut(s)	99, 102, 105, 108
Sau3AI	GATC	4 cut(s)	11, 166, 246, 292
Sau96I	GGNCC	1 cut(s)	233
SchI	GAGTC	3 cut(s)	249, 322, 333
SduI	GDGCHC	2 cut(s)	50, 122
SetI	ASST	5 cut(s)	129, 201, 266, 285, 336
Sfr274I	CTCGAG	1 cut(s)	341
SlaI	CTCGAG	1 cut(s)	341
SmlI	CTYRAG	1 cut(s)	341
SmoI	CTYRAG	1 cut(s)	341
Sse9I	AATT	1 cut(s)	209
SsiI	CCGC	7 cut(s)	57, 96, 99, 102, 105, 108, 141
StyI	CCWWGG	2 cut(s)	85, 300
TaiI	ACGT	1 cut(s)	129
TaqI	TCGA	3 cut(s)	14, 337, 342
TasI	AATT	1 cut(s)	209
TauI	GCSGC	4 cut(s)	101, 104, 107, 110
TseFI	GTSAC	1 cut(s)	127
Tsp45I	GTSAC	1 cut(s)	127
TspDTI	ATGAA	1 cut(s)	35
XhoI	CTCGAG	1 cut(s)	341
XmnI	GAANNNNTTC	1 cut(s)	26
ZraI	GACGTC	1 cut(s)	127

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.