Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0016075

Physical Location & Seq

Genomic Coordinates Forward (+)

30325520 .. 30327101

Gene Structure 1582 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G330200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

ATGGCAACAAGATCAAAACCAGGGAATATGAATATGAAAGGTTTCTACAGGCAAAGGAAAAGCAGTAGCATCGGCGGTGGTATCTCCAAGAAGAACAAATCTCAATCGACCACTCACCCAGCTGCTGCCTCTTTCGGCTCGGATGTCACCCAACCCACCGCACTTATGTCACACGCTTCTCTAGACCTCAAAGATGATTATGATGAGCAAGAAGCGCTGTTGAGGCAATTTGATATGAACATGGCATACGGACCATGCGTTGGGATGACCAGACTTGAAAGGTGGGAGCGTGCTTGCATTCTGGGTTTGAACCCTCCTAAGGAAGTCGAGAGTCTTTTGACGGGTGGCAAAGTTTGCTGTGAGTGCTTGTGGGATGGTCGCATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000731 GO:0003674 GO:0003824 GO:0003887 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006281 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019438 GO:0030894 GO:0031974 GO:0031981 GO:0032991 GO:0032993 GO:0033554 GO:0034061 GO:0034641 GO:0034645 GO:0034654 GO:0042575 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043596 GO:0043601 GO:0043625 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0050896 GO:0051716 GO:0061695 GO:0070013 GO:0071704 GO:0071897 GO:0090304 GO:0140097 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03030 ko03410 ko03420 ko03430 ko03440 ko05166 map00230 map00240 map01100 map03030 map03410 map03420 map03430 map03440 map05166

Pfam Domains

Protein Families

DNA_pol_delta_4

Protein Analysis

129

Amino Acids

14.11

Weight (kDa)

8.64

Isoelectric Point (pI)

54.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016075)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09815
fragaria_vesca	FvH4_1g22780
malus_domestica	MD07G1311000.v1.1
prunus_persica	Prupe.2G330200_v2.0.a1
pyrus_communis	pycom07g28330
rosa_chinensis	RchiOBHm_Chr2g0117101
rosa_laevigata	RLG00000018329
rosa_multiflora	Rmu_sc0027522.1_g000001
rosa_roxburghii	Rroxscaffold_2G00126710
rosa_rugosa	Rorug02G0210500
rosa_samantha	Rh2AG266200 Rh2BG278200 Rh2DG273400 Rh2DG292500
rosa_wichuraiana	Rw2G021010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	260
AciI	CCGC	2 cut(s)	75, 159
AfeI	AGCGCT	1 cut(s)	216
AfiI	CCNNNNNNNGG	2 cut(s)	260, 319
AgsI	TTSAA	2 cut(s)	278, 310
AjnI	CCWGG	1 cut(s)	19
AluBI	AGCT	1 cut(s)	122
AluI	AGCT	1 cut(s)	122
AlwNI	CAGNNNCTG	1 cut(s)	125
Aor51HI	AGCGCT	1 cut(s)	216
ApeKI	GCWGC	2 cut(s)	122, 125
Asp700I	GAANNNNTTC	1 cut(s)	41
AspLEI	GCGC	1 cut(s)	217
AspS9I	GGNCC	1 cut(s)	251
AsuHPI	GGTGA	2 cut(s)	107, 139
AvaII	GGWCC	1 cut(s)	251
AxyI	CCTNAGG	1 cut(s)	318
BbvI	GCAGC	2 cut(s)	109, 112
BccI	CCATC	1 cut(s)	368
BcgI	CGANNNNNNTGC	2 cut(s)	52, 86
BciT130I	CCWGG	1 cut(s)	21
BfaI	CTAG	1 cut(s)	182
BfmI	CTRYAG	1 cut(s)	46
BfoI	RGCGCY	1 cut(s)	218
BisI	GCNGC	2 cut(s)	123, 126
BlsI	GCNGC	2 cut(s)	124, 127
Bme1390I	CCNGG	1 cut(s)	21
Bme18I	GGWCC	1 cut(s)	251
BmgT120I	GGNCC	1 cut(s)	251
BmrFI	CCNGG	1 cut(s)	21
BmsI	GCATC	1 cut(s)	78
BsaJI	CCNNGG	1 cut(s)	20
Bsc4I	CCNNNNNNNGG	2 cut(s)	260, 319
Bse21I	CCTNAGG	1 cut(s)	318
BseBI	CCWGG	1 cut(s)	21
BseDI	CCNNGG	1 cut(s)	20
BseGI	GGATG	3 cut(s)	148, 270, 379
BseLI	CCNNNNNNNGG	2 cut(s)	260, 319
BseXI	GCAGC	2 cut(s)	109, 112
BseYI	CCCAGC	1 cut(s)	118
BslI	CCNNNNNNNGG	2 cut(s)	260, 319
BsmI	GAATGC	1 cut(s)	297
Bsp143I	GATC	1 cut(s)	11
BspACI	CCGC	2 cut(s)	75, 159
BssECI	CCNNGG	1 cut(s)	20
BssMI	GATC	1 cut(s)	11
Bst2UI	CCWGG	1 cut(s)	21
BstAPI	GCANNNNNTGC	1 cut(s)	354
BstC8I	GCNNGC	2 cut(s)	291, 295
BstDEI	CTNAG	1 cut(s)	318
BstF5I	GGATG	3 cut(s)	148, 270, 379
BstH2I	RGCGCY	1 cut(s)	218
BstHHI	GCGC	1 cut(s)	217
BstKTI	GATC	1 cut(s)	14
BstMBI	GATC	1 cut(s)	11
BstMWI	GCNNNNNNNGC	4 cut(s)	214, 223, 354, 363
BstNI	CCWGG	1 cut(s)	21
BstSCI	CCNGG	1 cut(s)	19
BstSFI	CTRYAG	1 cut(s)	46
BstV1I	GCAGC	2 cut(s)	109, 112
Bsu36I	CCTNAGG	1 cut(s)	318
BtsCI	GGATG	3 cut(s)	148, 270, 379
Cac8I	GCNNGC	2 cut(s)	291, 295
CaiI	CAGNNNCTG	1 cut(s)	125
CfoI	GCGC	1 cut(s)	217
Cfr13I	GGNCC	1 cut(s)	251
CviAII	CATG	2 cut(s)	241, 255
CviJI	RGCY	2 cut(s)	122, 138
CviKI_1	RGCY	2 cut(s)	122, 138
DdeI	CTNAG	1 cut(s)	318
DpnI	GATC	1 cut(s)	13
DpnII	GATC	1 cut(s)	11
Eco47I	GGWCC	1 cut(s)	251
Eco47III	AGCGCT	1 cut(s)	216
Eco81I	CCTNAGG	1 cut(s)	318
EcoRII	CCWGG	1 cut(s)	19
FaeI	CATG	2 cut(s)	244, 258
FaiI	YATR	8 cut(s)	29, 35, 167, 201, 236, 242, 247, 256
FatI	CATG	2 cut(s)	240, 254
Fnu4HI	GCNGC	2 cut(s)	123, 126
FokI	GGATG	2 cut(s)	155, 277
Fsp4HI	GCNGC	2 cut(s)	123, 126
FspBI	CTAG	1 cut(s)	182
GlaI	GCGC	1 cut(s)	216
GluI	GCNGC	2 cut(s)	123, 126
GsaI	CCCAGC	1 cut(s)	122
HaeII	RGCGCY	1 cut(s)	218
HhaI	GCGC	1 cut(s)	217
Hin1II	CATG	2 cut(s)	244, 258
Hin6I	GCGC	1 cut(s)	215
HinP1I	GCGC	1 cut(s)	215
HinfI	GANTC	1 cut(s)	331
HphI	GGTGA	2 cut(s)	107, 139
Hpy188I	TCNGA	1 cut(s)	142
Hpy188III	TCNNGA	2 cut(s)	182, 328
HpyCH4V	TGCA	1 cut(s)	297
HpyF10VI	GCNNNNNNNGC	4 cut(s)	214, 223, 354, 363
HpyF3I	CTNAG	1 cut(s)	318
Hsp92II	CATG	2 cut(s)	244, 258
HspAI	GCGC	1 cut(s)	215
Kzo9I	GATC	1 cut(s)	11
LmnI	GCTCC	1 cut(s)	286
LpnPI	CCDG	6 cut(s)	6, 33, 34, 132, 283, 287
Lsp1109I	GCAGC	2 cut(s)	109, 112
LweI	GCATC	1 cut(s)	78
MaeI	CTAG	1 cut(s)	182
MaeIII	GTNAC	2 cut(s)	145, 168
MalI	GATC	1 cut(s)	13
MboI	GATC	1 cut(s)	11
MboII	GAAGA	1 cut(s)	103
MluCI	AATT	1 cut(s)	227
MlyI	GAGTC	1 cut(s)	340
MnlI	CCTC	4 cut(s)	139, 197, 216, 324
MroXI	GAANNNNTTC	1 cut(s)	41
MspA1I	CMGCKG	1 cut(s)	122
MspR9I	CCNGG	1 cut(s)	21
Mva1269I	GAATGC	1 cut(s)	297
MvaI	CCWGG	1 cut(s)	21
MwoI	GCNNNNNNNGC	4 cut(s)	214, 223, 354, 363
NdeII	GATC	1 cut(s)	11
NlaIII	CATG	2 cut(s)	244, 258
NmuCI	GTSAC	2 cut(s)	145, 168
PcsI	WCGNNNNNNNCGW	1 cut(s)	255
PctI	GAATGC	1 cut(s)	297
PdmI	GAANNNNTTC	1 cut(s)	41
PflMI	CCANNNNNTGG	1 cut(s)	260
PkrI	GCNGC	2 cut(s)	124, 127
PleI	GAGTC	1 cut(s)	339
PpsI	GAGTC	1 cut(s)	339
Psp6I	CCWGG	1 cut(s)	19
PspFI	CCCAGC	1 cut(s)	118
PspGI	CCWGG	1 cut(s)	19
PspPI	GGNCC	1 cut(s)	251
PsrI	GAACNNNNNNTAC	2 cut(s)	230, 262
PstNI	CAGNNNCTG	1 cut(s)	125
PvuII	CAGCTG	1 cut(s)	122
SatI	GCNGC	2 cut(s)	123, 126
Sau3AI	GATC	1 cut(s)	11
Sau96I	GGNCC	1 cut(s)	251
SchI	GAGTC	1 cut(s)	340
ScrFI	CCNGG	1 cut(s)	21
SetI	ASST	4 cut(s)	43, 124, 189, 284
SfaNI	GCATC	1 cut(s)	78
SfcI	CTRYAG	1 cut(s)	46
SinI	GGWCC	1 cut(s)	251
Sse9I	AATT	1 cut(s)	227
SsiI	CCGC	2 cut(s)	75, 159
SspMI	CTAG	1 cut(s)	182
StyD4I	CCNGG	1 cut(s)	19
TaqI	TCGA	2 cut(s)	107, 327
TasI	AATT	1 cut(s)	227
TseFI	GTSAC	2 cut(s)	145, 168
TseI	GCWGC	2 cut(s)	122, 125
Tsp45I	GTSAC	2 cut(s)	145, 168
TspDTI	ATGAA	3 cut(s)	44, 50, 251
TspGWI	ACGGA	1 cut(s)	264
Van91I	CCANNNNNTGG	1 cut(s)	260
VpaK11BI	GGWCC	1 cut(s)	251
XbaI	TCTAGA	1 cut(s)	181
XmnI	GAANNNNTTC	1 cut(s)	41
XspI	CTAG	1 cut(s)	182

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.