Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0016075

Physical Location & Seq

Genomic Coordinates Reverse (-)

28384048 .. 28384594

Gene Structure 547 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000018329

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

ATGGCGACGAGATCGAATATGAAAGGTTTCTACAAACAAAAGAAGAGCACCACCTCCGGTGGTATCTCCAAGAAGAAGAAAACCCAAGGCGCCGCCTCTTTGGGCTCCGACGTCACCCAACCCTCCGCCCTTATCTCCCACGGCGCTCCTGATCTCAAAGATGATTATGATGAGCAAGAGGAGGTGCTGAGGCAATTTGATTTGAACACGGCGTATGGGCCGTGTTTTGGGATCACCAGACTCGCAAGGTGGGAGCGTGCCTGCAAGCTGGGGATGGATCCTCCCAAGGAAGTGGAGAGTCTTTTGAAGAGTGGGAAGGTTCGACTCGAGTGCTTGTGGGATGGTCGCATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000731 GO:0003674 GO:0003824 GO:0003887 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006281 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019438 GO:0030894 GO:0031974 GO:0031981 GO:0032991 GO:0032993 GO:0033554 GO:0034061 GO:0034641 GO:0034645 GO:0034654 GO:0042575 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043596 GO:0043601 GO:0043625 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0050896 GO:0051716 GO:0061695 GO:0070013 GO:0071704 GO:0071897 GO:0090304 GO:0140097 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03030 ko03410 ko03420 ko03430 ko03440 ko05166 map00230 map00240 map01100 map03030 map03410 map03420 map03430 map03440 map05166

Pfam Domains

Protein Families

DNA_pol_delta_4

Protein Analysis

118

Amino Acids

12.97

Weight (kDa)

9.19

Isoelectric Point (pI)

43.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DNA_pol_delta_4	PF04081	53 - 103	1.1e-18	DNA polymerase delta, subunit 4

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0016075)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09815
fragaria_vesca	FvH4_1g22780
malus_domestica	MD07G1311000.v1.1
prunus_persica	Prupe.2G330200_v2.0.a1
pyrus_communis	pycom07g28330
rosa_chinensis	RchiOBHm_Chr2g0117101
rosa_laevigata	RLG00000018329
rosa_multiflora	Rmu_sc0027522.1_g000001
rosa_roxburghii	Rroxscaffold_2G00126710
rosa_rugosa	Rorug02G0210500
rosa_samantha	Rh2AG266200 Rh2BG278200 Rh2DG273400 Rh2DG292500
rosa_wichuraiana	Rw2G021010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	114
AccB1I	GGYRCC	1 cut(s)	89
AciI	CCGC	2 cut(s)	93, 126
AclWI	GGATC	3 cut(s)	239, 272, 285
AcyI	GRCGYC	2 cut(s)	90, 111
AfiI	CCNNNNNNNGG	1 cut(s)	227
AgsI	TTSAA	2 cut(s)	205, 307
AluBI	AGCT	1 cut(s)	268
AluI	AGCT	1 cut(s)	268
Alw21I	GWGCWC	1 cut(s)	50
AlwI	GGATC	3 cut(s)	239, 272, 285
Ama87I	CYCGRG	1 cut(s)	326
AoxI	GGCC	1 cut(s)	218
Asp700I	GAANNNNTTC	1 cut(s)	26
AspLEI	GCGC	2 cut(s)	92, 146
AspS9I	GGNCC	1 cut(s)	218
AsuHPI	GGTGA	2 cut(s)	106, 226
AvaI	CYCGRG	1 cut(s)	326
BamHI	GGATCC	1 cut(s)	277
BanI	GGYRCC	1 cut(s)	89
BanII	GRGCYC	1 cut(s)	107
Bbv12I	GWGCWC	1 cut(s)	50
BbvCI	CCTCAGC	1 cut(s)	188
BccI	CCATC	2 cut(s)	268, 335
BceAI	ACGGC	3 cut(s)	157, 205, 225
BcgI	CGANNNNNNTGC	2 cut(s)	312, 346
BfoI	RGCGCY	2 cut(s)	93, 147
BisI	GCNGC	1 cut(s)	93
BlsI	GCNGC	1 cut(s)	94
BmeT110I	CYCGRG	1 cut(s)	326
BmgT120I	GGNCC	1 cut(s)	218
BmiI	GGNNCC	3 cut(s)	91, 106, 279
Bpu10I	CCTNAGC	1 cut(s)	188
BsaHI	GRCGYC	2 cut(s)	90, 111
BsaJI	CCNNGG	3 cut(s)	85, 139, 285
BsaWI	WCCGGW	1 cut(s)	56
Bsc4I	CCNNNNNNNGG	1 cut(s)	227
BseDI	CCNNGG	3 cut(s)	85, 139, 285
BseGI	GGATG	2 cut(s)	279, 346
BseLI	CCNNNNNNNGG	1 cut(s)	227
BseMII	CTCAG	1 cut(s)	179
BseRI	GAGGAG	1 cut(s)	194
BseYI	CCCAGC	1 cut(s)	268
BshFI	GGCC	1 cut(s)	220
BshNI	GGYRCC	1 cut(s)	89
BsiHKAI	GWGCWC	1 cut(s)	50
BsiHKCI	CYCGRG	1 cut(s)	326
BsiSI	CCGG	1 cut(s)	57
BslI	CCNNNNNNNGG	1 cut(s)	227
BsnI	GGCC	1 cut(s)	220
BsoBI	CYCGRG	1 cut(s)	326
Bsp1286I	GDGCHC	2 cut(s)	50, 107
Bsp143I	GATC	4 cut(s)	11, 151, 231, 277
BspACI	CCGC	2 cut(s)	93, 126
BspANI	GGCC	1 cut(s)	220
BspCNI	CTCAG	1 cut(s)	180
BspLI	GGNNCC	3 cut(s)	91, 106, 279
BspPI	GGATC	3 cut(s)	239, 272, 285
BspQI	GCTCTTC	1 cut(s)	38
BspT107I	GGYRCC	1 cut(s)	89
BssECI	CCNNGG	3 cut(s)	85, 139, 285
BssMI	GATC	4 cut(s)	11, 151, 231, 277
BssNI	GRCGYC	2 cut(s)	90, 111
BssT1I	CCWWGG	2 cut(s)	85, 285
Bst6I	CTCTTC	2 cut(s)	38, 302
BstACI	GRCGYC	2 cut(s)	90, 111
BstC8I	GCNNGC	3 cut(s)	258, 262, 266
BstDEI	CTNAG	1 cut(s)	188
BstDSI	CCRYGG	1 cut(s)	139
BstF5I	GGATG	2 cut(s)	279, 346
BstH2I	RGCGCY	2 cut(s)	93, 147
BstHHI	GCGC	2 cut(s)	92, 146
BstKTI	GATC	4 cut(s)	14, 154, 234, 280
BstMBI	GATC	4 cut(s)	11, 151, 231, 277
BstX2I	RGATCY	1 cut(s)	277
BstXI	CCANNNNNNTGG	1 cut(s)	292
BstYI	RGATCY	1 cut(s)	277
BsuRI	GGCC	1 cut(s)	220
BtgI	CCRYGG	1 cut(s)	139
BtsCI	GGATG	2 cut(s)	279, 346
Cac8I	GCNNGC	3 cut(s)	258, 262, 266
CfoI	GCGC	2 cut(s)	92, 146
Cfr13I	GGNCC	1 cut(s)	218
CviJI	RGCY	3 cut(s)	105, 220, 268
CviKI_1	RGCY	3 cut(s)	105, 220, 268
DdeI	CTNAG	1 cut(s)	188
DinI	GGCGCC	1 cut(s)	91
DpnI	GATC	4 cut(s)	13, 153, 233, 279
DpnII	GATC	4 cut(s)	11, 151, 231, 277
Eam1104I	CTCTTC	2 cut(s)	38, 302
EarI	CTCTTC	2 cut(s)	38, 302
EciI	GGCGGA	1 cut(s)	115
Eco130I	CCWWGG	2 cut(s)	85, 285
Eco24I	GRGCYC	1 cut(s)	107
Eco88I	CYCGRG	1 cut(s)	326
EcoT14I	CCWWGG	2 cut(s)	85, 285
EcoT38I	GRGCYC	1 cut(s)	107
EgeI	GGCGCC	1 cut(s)	91
EheI	GGCGCC	1 cut(s)	91
ErhI	CCWWGG	2 cut(s)	85, 285
FaiI	YATR	3 cut(s)	20, 168, 216
Fnu4HI	GCNGC	1 cut(s)	93
FokI	GGATG	1 cut(s)	286
FriOI	GRGCYC	1 cut(s)	107
Fsp4HI	GCNGC	1 cut(s)	93
GlaI	GCGC	2 cut(s)	91, 145
GluI	GCNGC	1 cut(s)	93
GsaI	CCCAGC	1 cut(s)	272
HaeII	RGCGCY	2 cut(s)	93, 147
HaeIII	GGCC	1 cut(s)	220
HapII	CCGG	1 cut(s)	57
HhaI	GCGC	2 cut(s)	92, 146
Hin1I	GRCGYC	2 cut(s)	90, 111
Hin6I	GCGC	2 cut(s)	90, 144
HinP1I	GCGC	2 cut(s)	90, 144
HinfI	GANTC	3 cut(s)	240, 298, 324
HpaII	CCGG	1 cut(s)	57
HphI	GGTGA	2 cut(s)	106, 226
Hpy188I	TCNGA	1 cut(s)	109
Hpy188III	TCNNGA	1 cut(s)	149
Hpy99I	CGWCG	2 cut(s)	10, 113
HpyAV	CCTTC	1 cut(s)	310
HpyCH4IV	ACGT	1 cut(s)	111
HpyCH4V	TGCA	1 cut(s)	264
HpyF3I	CTNAG	1 cut(s)	188
HpySE526I	ACGT	1 cut(s)	111
Hsp92I	GRCGYC	2 cut(s)	90, 111
HspAI	GCGC	2 cut(s)	90, 144
KasI	GGCGCC	1 cut(s)	89
Kzo9I	GATC	4 cut(s)	11, 151, 231, 277
LguI	GCTCTTC	1 cut(s)	38
LmnI	GCTCC	3 cut(s)	110, 151, 253
LpnPI	CCDG	5 cut(s)	70, 162, 250, 254, 274
MaeII	ACGT	1 cut(s)	111
MaeIII	GTNAC	1 cut(s)	112
MalI	GATC	4 cut(s)	13, 153, 233, 279
MboI	GATC	4 cut(s)	11, 151, 231, 277
MboII	GAAGA	4 cut(s)	55, 85, 88, 319
MflI	RGATCY	1 cut(s)	277
MhlI	GDGCHC	2 cut(s)	50, 107
MluCI	AATT	1 cut(s)	194
Mly113I	GGCGCC	1 cut(s)	90
MlyI	GAGTC	3 cut(s)	234, 307, 318
MmeI	TCCRAC	1 cut(s)	132
MnlI	CCTC	7 cut(s)	64, 106, 133, 172, 175, 183, 291
MroXI	GAANNNNTTC	1 cut(s)	26
MspI	CCGG	1 cut(s)	57
NarI	GGCGCC	1 cut(s)	90
NdeII	GATC	4 cut(s)	11, 151, 231, 277
NlaIV	GGNNCC	3 cut(s)	91, 106, 279
NmuCI	GTSAC	1 cut(s)	112
PaeR7I	CTCGAG	1 cut(s)	326
PciSI	GCTCTTC	1 cut(s)	38
PdmI	GAANNNNTTC	1 cut(s)	26
PkrI	GCNGC	1 cut(s)	94
PleI	GAGTC	3 cut(s)	234, 306, 318
PluTI	GGCGCC	1 cut(s)	93
PpsI	GAGTC	3 cut(s)	234, 306, 318
PspFI	CCCAGC	1 cut(s)	268
PspN4I	GGNNCC	3 cut(s)	91, 106, 279
PspPI	GGNCC	1 cut(s)	218
PspXI	VCTCGAGB	1 cut(s)	326
PsuI	RGATCY	1 cut(s)	277
SapI	GCTCTTC	1 cut(s)	38
SatI	GCNGC	1 cut(s)	93
Sau3AI	GATC	4 cut(s)	11, 151, 231, 277
Sau96I	GGNCC	1 cut(s)	218
SchI	GAGTC	3 cut(s)	234, 307, 318
SduI	GDGCHC	2 cut(s)	50, 107
SetI	ASST	7 cut(s)	28, 56, 114, 186, 251, 270, 321
SfoI	GGCGCC	1 cut(s)	91
Sfr274I	CTCGAG	1 cut(s)	326
SlaI	CTCGAG	1 cut(s)	326
SmlI	CTYRAG	1 cut(s)	326
SmoI	CTYRAG	1 cut(s)	326
Sse9I	AATT	1 cut(s)	194
SsiI	CCGC	2 cut(s)	93, 126
SspDI	GGCGCC	1 cut(s)	89
StyI	CCWWGG	2 cut(s)	85, 285
TaiI	ACGT	1 cut(s)	114
TaqI	TCGA	3 cut(s)	14, 322, 327
TasI	AATT	1 cut(s)	194
TauI	GCSGC	1 cut(s)	95
TseFI	GTSAC	1 cut(s)	112
Tsp45I	GTSAC	1 cut(s)	112
TspDTI	ATGAA	1 cut(s)	35
XhoI	CTCGAG	1 cut(s)	326
XmnI	GAANNNNTTC	1 cut(s)	26
ZraI	GACGTC	1 cut(s)	112

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.