Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0016075

Physical Location & Seq

Genomic Coordinates Reverse (-)

27671621 .. 27673501

Gene Structure 1881 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g28330.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

ATGACTATTTTGGTCAAAAAGCGATTTGATACGTATATCAATTTTCTCTTTTTCTTTTTTGTTCAAATTATATCAATTTTCTCTAAAGAAGAAAGGAATTCAAAATTCGAAAGTTTGGAGAGAGCGGTGGGGATGGCATCAAGATCAAACGCAGAGAATATGAAGGGCTTCTACAGGCAAAGGAAAAGCAACAGTAGCATCGGCGGGGATATCTCTAAGAAGAAAAAATCCCAATCGCCCACTCACCCAAAAGCTGCTGCCGCTGCCTCTTTCGGCTCGGATGTCGCTCAACCCACCGCCCTTATTTCACACGGCTCTCCAGACCTCAAAGATGATTATGACGAGCAAGAAGAGCTACTGAGGAAATTTGATATGAACCTGGCATACGGACCATGCATTGGGATGACCAGACTTGCACGGTTGGAGAGGGCTTGCAGTCTAGGTTTGAACCCTCCTAAAGAAGTGGAGAGTCTTTTGAAAGGTGGCAAAGTTCGCTCTGAGTGTTTGTGGGATGGTCGCATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000731 GO:0003674 GO:0003824 GO:0003887 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006281 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019438 GO:0030894 GO:0031974 GO:0031981 GO:0032991 GO:0032993 GO:0033554 GO:0034061 GO:0034641 GO:0034645 GO:0034654 GO:0042575 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043596 GO:0043601 GO:0043625 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0050896 GO:0051716 GO:0061695 GO:0070013 GO:0071704 GO:0071897 GO:0090304 GO:0140097 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03030 ko03410 ko03420 ko03430 ko03440 ko05166 map00230 map00240 map01100 map03030 map03410 map03420 map03430 map03440 map05166

Pfam Domains

Protein Families

DNA_pol_delta_4

Protein Analysis

175

Amino Acids

19.54

Weight (kDa)

9.38

Isoelectric Point (pI)

48.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DNA_pol_delta_4	PF04081	110 - 160	1.1e-17	DNA polymerase delta, subunit 4

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0016075)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09815
fragaria_vesca	FvH4_1g22780
malus_domestica	MD07G1311000.v1.1
prunus_persica	Prupe.2G330200_v2.0.a1
pyrus_communis	pycom07g28330
rosa_chinensis	RchiOBHm_Chr2g0117101
rosa_laevigata	RLG00000018329
rosa_multiflora	Rmu_sc0027522.1_g000001
rosa_roxburghii	Rroxscaffold_2G00126710
rosa_rugosa	Rorug02G0210500
rosa_samantha	Rh2AG266200 Rh2BG278200 Rh2DG273400 Rh2DG292500
rosa_wichuraiana	Rw2G021010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	398
AccBSI	CCGCTC	1 cut(s)	125
AciI	CCGC	4 cut(s)	125, 204, 261, 297
AcsI	RAATTY	3 cut(s)	97, 104, 365
AfiI	CCNNNNNNNGG	1 cut(s)	398
AgsI	TTSAA	4 cut(s)	65, 102, 448, 478
AjnI	CCWGG	1 cut(s)	378
AluBI	AGCT	2 cut(s)	254, 355
AluI	AGCT	2 cut(s)	254, 355
ApeKI	GCWGC	3 cut(s)	254, 257, 263
ApoI	RAATTY	3 cut(s)	97, 104, 365
Asp700I	GAANNNNTTC	1 cut(s)	167
AspS9I	GGNCC	1 cut(s)	389
AsuHPI	GGTGA	1 cut(s)	236
AsuII	TTCGAA	1 cut(s)	108
AvaII	GGWCC	1 cut(s)	389
BarI	GAAGNNNNNNTAC	2 cut(s)	155, 187
BbvI	GCAGC	3 cut(s)	241, 244, 250
BccI	CCATC	2 cut(s)	127, 506
BceAI	ACGGC	1 cut(s)	328
BciT130I	CCWGG	1 cut(s)	380
BfaI	CTAG	1 cut(s)	440
BfmI	CTRYAG	1 cut(s)	172
BisI	GCNGC	4 cut(s)	255, 258, 261, 264
BlsI	GCNGC	4 cut(s)	256, 259, 262, 265
Bme1390I	CCNGG	1 cut(s)	380
Bme18I	GGWCC	1 cut(s)	389
BmgT120I	GGNCC	1 cut(s)	389
BmrFI	CCNGG	1 cut(s)	380
BmsI	GCATC	2 cut(s)	146, 207
BpmI	CTGGAG	1 cut(s)	303
Bpu14I	TTCGAA	1 cut(s)	108
BsaAI	YACGTR	1 cut(s)	33
Bsc4I	CCNNNNNNNGG	1 cut(s)	398
BseBI	CCWGG	1 cut(s)	380
BseGI	GGATG	4 cut(s)	138, 286, 408, 517
BseLI	CCNNNNNNNGG	1 cut(s)	398
BseMII	CTCAG	2 cut(s)	350, 489
BseXI	GCAGC	3 cut(s)	241, 244, 250
BslI	CCNNNNNNNGG	1 cut(s)	398
Bsp119I	TTCGAA	1 cut(s)	108
Bsp143I	GATC	1 cut(s)	143
BspACI	CCGC	4 cut(s)	125, 204, 261, 297
BspCNI	CTCAG	2 cut(s)	351, 490
BspQI	GCTCTTC	1 cut(s)	345
BspT104I	TTCGAA	1 cut(s)	108
BsrBI	CCGCTC	1 cut(s)	125
BssMI	GATC	1 cut(s)	143
Bst2UI	CCWGG	1 cut(s)	380
Bst4CI	ACNGT	2 cut(s)	194, 420
Bst6I	CTCTTC	1 cut(s)	345
BstBAI	YACGTR	1 cut(s)	33
BstBI	TTCGAA	1 cut(s)	108
BstC8I	GCNNGC	1 cut(s)	433
BstDEI	CTNAG	3 cut(s)	216, 359, 498
BstF5I	GGATG	4 cut(s)	138, 286, 408, 517
BstKTI	GATC	1 cut(s)	146
BstMBI	GATC	1 cut(s)	143
BstMWI	GCNNNNNNNGC	5 cut(s)	195, 260, 263, 352, 492
BstNI	CCWGG	1 cut(s)	380
BstSCI	CCNGG	1 cut(s)	378
BstSFI	CTRYAG	1 cut(s)	172
BstSNI	TACGTA	1 cut(s)	33
BstV1I	GCAGC	3 cut(s)	241, 244, 250
BtsCI	GGATG	4 cut(s)	138, 286, 408, 517
Cac8I	GCNNGC	1 cut(s)	433
Cfr13I	GGNCC	1 cut(s)	389
CviAII	CATG	1 cut(s)	393
CviJI	RGCY	6 cut(s)	168, 254, 276, 315, 355, 431
CviKI_1	RGCY	6 cut(s)	168, 254, 276, 315, 355, 431
DdeI	CTNAG	3 cut(s)	216, 359, 498
DpnI	GATC	1 cut(s)	145
DpnII	GATC	1 cut(s)	143
Eam1104I	CTCTTC	1 cut(s)	345
EarI	CTCTTC	1 cut(s)	345
Eco105I	TACGTA	1 cut(s)	33
Eco32I	GATATC	1 cut(s)	211
Eco47I	GGWCC	1 cut(s)	389
EcoRI	GAATTC	1 cut(s)	97
EcoRII	CCWGG	1 cut(s)	378
EcoRV	GATATC	1 cut(s)	211
EcoT22I	ATGCAT	1 cut(s)	398
FaeI	CATG	1 cut(s)	396
FaiI	YATR	7 cut(s)	36, 71, 161, 339, 374, 385, 394
FatI	CATG	1 cut(s)	392
FauI	CCCGC	1 cut(s)	197
Fnu4HI	GCNGC	4 cut(s)	255, 258, 261, 264
FokI	GGATG	3 cut(s)	145, 293, 415
Fsp4HI	GCNGC	4 cut(s)	255, 258, 261, 264
FspBI	CTAG	1 cut(s)	440
GluI	GCNGC	4 cut(s)	255, 258, 261, 264
GsuI	CTGGAG	1 cut(s)	303
Hin1II	CATG	1 cut(s)	396
HinfI	GANTC	1 cut(s)	469
HphI	GGTGA	1 cut(s)	236
Hpy188I	TCNGA	2 cut(s)	280, 499
Hpy188III	TCNNGA	2 cut(s)	141, 320
HpyAV	CCTTC	1 cut(s)	157
HpyCH4III	ACNGT	2 cut(s)	194, 420
HpyCH4IV	ACGT	1 cut(s)	32
HpyCH4V	TGCA	3 cut(s)	396, 416, 435
HpyF10VI	GCNNNNNNNGC	5 cut(s)	195, 260, 263, 352, 492
HpyF3I	CTNAG	3 cut(s)	216, 359, 498
HpySE526I	ACGT	1 cut(s)	32
Hsp92II	CATG	1 cut(s)	396
Kzo9I	GATC	1 cut(s)	143
LguI	GCTCTTC	1 cut(s)	345
LpnPI	CCDG	5 cut(s)	160, 333, 365, 392, 421
Lsp1109I	GCAGC	3 cut(s)	241, 244, 250
LweI	GCATC	2 cut(s)	146, 207
MaeI	CTAG	1 cut(s)	440
MaeII	ACGT	1 cut(s)	32
MalI	GATC	1 cut(s)	145
MbiI	CCGCTC	1 cut(s)	125
MboI	GATC	1 cut(s)	143
MboII	GAAGA	3 cut(s)	101, 232, 362
MluCI	AATT	6 cut(s)	40, 66, 75, 97, 104, 365
MlyI	GAGTC	1 cut(s)	478
MmeI	TCCRAC	1 cut(s)	402
MnlI	CCTC	5 cut(s)	277, 335, 354, 420, 462
Mph1103I	ATGCAT	1 cut(s)	398
MroXI	GAANNNNTTC	1 cut(s)	167
MslI	CAYNNNNRTG	1 cut(s)	401
MspA1I	CMGCKG	1 cut(s)	263
MspR9I	CCNGG	1 cut(s)	380
MvaI	CCWGG	1 cut(s)	380
MwoI	GCNNNNNNNGC	5 cut(s)	195, 260, 263, 352, 492
NdeII	GATC	1 cut(s)	143
NlaIII	CATG	1 cut(s)	396
NsiI	ATGCAT	1 cut(s)	398
NspV	TTCGAA	1 cut(s)	108
PciSI	GCTCTTC	1 cut(s)	345
PdmI	GAANNNNTTC	1 cut(s)	167
PflMI	CCANNNNNTGG	1 cut(s)	398
PkrI	GCNGC	4 cut(s)	256, 259, 262, 265
PleI	GAGTC	1 cut(s)	477
PpsI	GAGTC	1 cut(s)	477
Ppu21I	YACGTR	1 cut(s)	33
Psp6I	CCWGG	1 cut(s)	378
PspGI	CCWGG	1 cut(s)	378
PspPI	GGNCC	1 cut(s)	389
PsrI	GAACNNNNNNTAC	2 cut(s)	368, 400
RseI	CAYNNNNRTG	1 cut(s)	401
SapI	GCTCTTC	1 cut(s)	345
SatI	GCNGC	4 cut(s)	255, 258, 261, 264
Sau3AI	GATC	1 cut(s)	143
Sau96I	GGNCC	1 cut(s)	389
SchI	GAGTC	1 cut(s)	478
ScrFI	CCNGG	1 cut(s)	380
SetI	ASST	7 cut(s)	35, 256, 327, 357, 381, 445, 484
SfaNI	GCATC	2 cut(s)	146, 207
SfcI	CTRYAG	1 cut(s)	172
SfuI	TTCGAA	1 cut(s)	108
SinI	GGWCC	1 cut(s)	389
SmiMI	CAYNNNNRTG	1 cut(s)	401
SnaBI	TACGTA	1 cut(s)	33
Sse9I	AATT	6 cut(s)	40, 66, 75, 97, 104, 365
SsiI	CCGC	4 cut(s)	125, 204, 261, 297
SspMI	CTAG	1 cut(s)	440
StyD4I	CCNGG	1 cut(s)	378
TaaI	ACNGT	2 cut(s)	194, 420
TaiI	ACGT	1 cut(s)	35
TaqI	TCGA	1 cut(s)	108
TasI	AATT	6 cut(s)	40, 66, 75, 97, 104, 365
TauI	GCSGC	1 cut(s)	263
TseI	GCWGC	3 cut(s)	254, 257, 263
TspDTI	ATGAA	2 cut(s)	176, 389
TspGWI	ACGGA	1 cut(s)	402
Van91I	CCANNNNNTGG	1 cut(s)	398
VpaK11BI	GGWCC	1 cut(s)	389
XapI	RAATTY	3 cut(s)	97, 104, 365
XmnI	GAANNNNTTC	1 cut(s)	167
XspI	CTAG	1 cut(s)	440
Zsp2I	ATGCAT	1 cut(s)	398

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.