Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0016075

Physical Location & Seq

Genomic Coordinates Reverse (-)

34416226 .. 34416784

Gene Structure 559 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG292500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

ATGGCGACGAGATCGAATATGAAGGGTTTCTACAAACAAAAGAAGAGCACCATCGCCGGTGGTGTCTCCAAGAAGAAGAAAACCCAAGGCGCTTCCGCCGCCGCCGCCTCTTTGGGCTCCGACGTCACCCAACCCTCCGCCCTTATCTCCCACGGCGCTCCTGATCTCAAAGATGATTATGATGAGCAAGAGGAGGTGCTGAGGCAATTTGATTTGAACACGGCGTATGGACCGTGTTTTGGGATCACCAGACTCGCAAGGTGGGAGCGTGCCTGCAAGCTGGGGATGGATCCTCCCAAGGAAGTGGAGAATCTTTTGAAGAGTGGGAAGGCTCGACTCGAGTGCTTGTGGGATGGTCGCATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000731 GO:0003674 GO:0003824 GO:0003887 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006281 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019438 GO:0030894 GO:0031974 GO:0031981 GO:0032991 GO:0032993 GO:0033554 GO:0034061 GO:0034641 GO:0034645 GO:0034654 GO:0042575 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043596 GO:0043601 GO:0043625 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0050896 GO:0051716 GO:0061695 GO:0070013 GO:0071704 GO:0071897 GO:0090304 GO:0140097 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03030 ko03410 ko03420 ko03430 ko03440 ko05166 map00230 map00240 map01100 map03030 map03410 map03420 map03430 map03440 map05166

Pfam Domains

Protein Families

DNA_pol_delta_4

Protein Analysis

121

Amino Acids

13.25

Weight (kDa)

9.19

Isoelectric Point (pI)

42.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DNA_pol_delta_4	PF04081	57 - 108	7.6e-19	DNA polymerase delta, subunit 4

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0016075)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09815
fragaria_vesca	FvH4_1g22780
malus_domestica	MD07G1311000.v1.1
prunus_persica	Prupe.2G330200_v2.0.a1
pyrus_communis	pycom07g28330
rosa_chinensis	RchiOBHm_Chr2g0117101
rosa_laevigata	RLG00000018329
rosa_multiflora	Rmu_sc0027522.1_g000001
rosa_roxburghii	Rroxscaffold_2G00126710
rosa_rugosa	Rorug02G0210500
rosa_samantha	Rh2AG266200 Rh2BG278200 Rh2DG273400 Rh2DG292500
rosa_wichuraiana	Rw2G021010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	126
AciI	CCGC	5 cut(s)	96, 99, 102, 105, 138
AclWI	GGATC	3 cut(s)	251, 284, 297
AcyI	GRCGYC	1 cut(s)	123
AfiI	CCNNNNNNNGG	1 cut(s)	239
AgsI	TTSAA	2 cut(s)	217, 319
AluBI	AGCT	1 cut(s)	280
AluI	AGCT	1 cut(s)	280
Alw21I	GWGCWC	1 cut(s)	50
Alw26I	GTCTC	1 cut(s)	70
AlwI	GGATC	3 cut(s)	251, 284, 297
Ama87I	CYCGRG	1 cut(s)	338
Asp700I	GAANNNNTTC	1 cut(s)	26
AspLEI	GCGC	2 cut(s)	92, 158
AspS9I	GGNCC	1 cut(s)	230
AsuHPI	GGTGA	2 cut(s)	118, 238
AvaI	CYCGRG	1 cut(s)	338
AvaII	GGWCC	1 cut(s)	230
BamHI	GGATCC	1 cut(s)	289
BanII	GRGCYC	1 cut(s)	119
BarI	GAAGNNNNNNTAC	2 cut(s)	14, 46
Bbv12I	GWGCWC	1 cut(s)	50
BbvCI	CCTCAGC	1 cut(s)	200
BccI	CCATC	3 cut(s)	59, 280, 347
BceAI	ACGGC	2 cut(s)	169, 237
BcgI	CGANNNNNNTGC	2 cut(s)	324, 358
BcoDI	GTCTC	1 cut(s)	70
BfoI	RGCGCY	2 cut(s)	93, 159
BisI	GCNGC	3 cut(s)	99, 102, 105
BlsI	GCNGC	3 cut(s)	100, 103, 106
Bme18I	GGWCC	1 cut(s)	230
BmeT110I	CYCGRG	1 cut(s)	338
BmgT120I	GGNCC	1 cut(s)	230
BmiI	GGNNCC	2 cut(s)	118, 291
Bpu10I	CCTNAGC	1 cut(s)	200
BsaHI	GRCGYC	1 cut(s)	123
BsaJI	CCNNGG	3 cut(s)	85, 151, 297
Bsc4I	CCNNNNNNNGG	1 cut(s)	239
Bse118I	RCCGGY	1 cut(s)	56
BseDI	CCNNGG	3 cut(s)	85, 151, 297
BseGI	GGATG	2 cut(s)	291, 358
BseLI	CCNNNNNNNGG	1 cut(s)	239
BseMII	CTCAG	1 cut(s)	191
BseRI	GAGGAG	1 cut(s)	206
BseYI	CCCAGC	1 cut(s)	280
BsiHKAI	GWGCWC	1 cut(s)	50
BsiHKCI	CYCGRG	1 cut(s)	338
BsiSI	CCGG	1 cut(s)	57
BslI	CCNNNNNNNGG	1 cut(s)	239
BsmAI	GTCTC	1 cut(s)	70
BsoBI	CYCGRG	1 cut(s)	338
Bsp1286I	GDGCHC	2 cut(s)	50, 119
Bsp143I	GATC	4 cut(s)	11, 163, 243, 289
BspACI	CCGC	5 cut(s)	96, 99, 102, 105, 138
BspCNI	CTCAG	1 cut(s)	192
BspLI	GGNNCC	2 cut(s)	118, 291
BspPI	GGATC	3 cut(s)	251, 284, 297
BspQI	GCTCTTC	1 cut(s)	38
BsrFI	RCCGGY	1 cut(s)	56
BssAI	RCCGGY	1 cut(s)	56
BssECI	CCNNGG	3 cut(s)	85, 151, 297
BssMI	GATC	4 cut(s)	11, 163, 243, 289
BssNI	GRCGYC	1 cut(s)	123
BssT1I	CCWWGG	2 cut(s)	85, 297
Bst4CI	ACNGT	1 cut(s)	234
Bst6I	CTCTTC	2 cut(s)	38, 314
BstACI	GRCGYC	1 cut(s)	123
BstC8I	GCNNGC	3 cut(s)	270, 274, 278
BstDEI	CTNAG	1 cut(s)	200
BstDSI	CCRYGG	1 cut(s)	151
BstF5I	GGATG	2 cut(s)	291, 358
BstH2I	RGCGCY	2 cut(s)	93, 159
BstHHI	GCGC	2 cut(s)	92, 158
BstKTI	GATC	4 cut(s)	14, 166, 246, 292
BstMAI	GTCTC	1 cut(s)	70
BstMBI	GATC	4 cut(s)	11, 163, 243, 289
BstMWI	GCNNNNNNNGC	2 cut(s)	98, 104
BstX2I	RGATCY	1 cut(s)	289
BstXI	CCANNNNNNTGG	1 cut(s)	304
BstYI	RGATCY	1 cut(s)	289
BtgI	CCRYGG	1 cut(s)	151
BtgZI	GCGATG	1 cut(s)	37
BtsCI	GGATG	2 cut(s)	291, 358
Cac8I	GCNNGC	3 cut(s)	270, 274, 278
CfoI	GCGC	2 cut(s)	92, 158
Cfr10I	RCCGGY	1 cut(s)	56
Cfr13I	GGNCC	1 cut(s)	230
CviJI	RGCY	3 cut(s)	117, 280, 332
CviKI_1	RGCY	3 cut(s)	117, 280, 332
DdeI	CTNAG	1 cut(s)	200
DpnI	GATC	4 cut(s)	13, 165, 245, 291
DpnII	GATC	4 cut(s)	11, 163, 243, 289
Eam1104I	CTCTTC	2 cut(s)	38, 314
EarI	CTCTTC	2 cut(s)	38, 314
EciI	GGCGGA	2 cut(s)	85, 127
Eco130I	CCWWGG	2 cut(s)	85, 297
Eco24I	GRGCYC	1 cut(s)	119
Eco47I	GGWCC	1 cut(s)	230
Eco88I	CYCGRG	1 cut(s)	338
EcoT14I	CCWWGG	2 cut(s)	85, 297
EcoT38I	GRGCYC	1 cut(s)	119
ErhI	CCWWGG	2 cut(s)	85, 297
FaiI	YATR	3 cut(s)	20, 180, 228
Fnu4HI	GCNGC	3 cut(s)	99, 102, 105
FokI	GGATG	1 cut(s)	298
FriOI	GRGCYC	1 cut(s)	119
Fsp4HI	GCNGC	3 cut(s)	99, 102, 105
GlaI	GCGC	2 cut(s)	91, 157
GluI	GCNGC	3 cut(s)	99, 102, 105
GsaI	CCCAGC	1 cut(s)	284
HaeII	RGCGCY	2 cut(s)	93, 159
HapII	CCGG	1 cut(s)	57
HhaI	GCGC	2 cut(s)	92, 158
Hin1I	GRCGYC	1 cut(s)	123
Hin6I	GCGC	2 cut(s)	90, 156
HinP1I	GCGC	2 cut(s)	90, 156
HinfI	GANTC	3 cut(s)	252, 310, 336
HpaII	CCGG	1 cut(s)	57
HphI	GGTGA	2 cut(s)	118, 238
Hpy188I	TCNGA	1 cut(s)	121
Hpy188III	TCNNGA	1 cut(s)	161
Hpy99I	CGWCG	2 cut(s)	10, 125
HpyAV	CCTTC	2 cut(s)	16, 322
HpyCH4III	ACNGT	1 cut(s)	234
HpyCH4IV	ACGT	1 cut(s)	123
HpyCH4V	TGCA	1 cut(s)	276
HpyF10VI	GCNNNNNNNGC	2 cut(s)	98, 104
HpyF3I	CTNAG	1 cut(s)	200
HpySE526I	ACGT	1 cut(s)	123
Hsp92I	GRCGYC	1 cut(s)	123
HspAI	GCGC	2 cut(s)	90, 156
Kzo9I	GATC	4 cut(s)	11, 163, 243, 289
LguI	GCTCTTC	1 cut(s)	38
LmnI	GCTCC	3 cut(s)	122, 163, 265
LpnPI	CCDG	5 cut(s)	70, 174, 262, 266, 286
MaeII	ACGT	1 cut(s)	123
MaeIII	GTNAC	1 cut(s)	124
MalI	GATC	4 cut(s)	13, 165, 245, 291
MboI	GATC	4 cut(s)	11, 163, 243, 289
MboII	GAAGA	4 cut(s)	55, 85, 88, 331
MflI	RGATCY	1 cut(s)	289
MhlI	GDGCHC	2 cut(s)	50, 119
MluCI	AATT	1 cut(s)	206
MlyI	GAGTC	2 cut(s)	246, 330
MmeI	TCCRAC	1 cut(s)	144
MnlI	CCTC	6 cut(s)	118, 145, 184, 187, 195, 303
MroXI	GAANNNNTTC	1 cut(s)	26
MspI	CCGG	1 cut(s)	57
MwoI	GCNNNNNNNGC	2 cut(s)	98, 104
NdeII	GATC	4 cut(s)	11, 163, 243, 289
NlaIV	GGNNCC	2 cut(s)	118, 291
NmuCI	GTSAC	1 cut(s)	124
PaeR7I	CTCGAG	1 cut(s)	338
PciSI	GCTCTTC	1 cut(s)	38
PdmI	GAANNNNTTC	1 cut(s)	26
PfeI	GAWTC	1 cut(s)	310
PkrI	GCNGC	3 cut(s)	100, 103, 106
PleI	GAGTC	2 cut(s)	246, 330
PpsI	GAGTC	2 cut(s)	246, 330
PspFI	CCCAGC	1 cut(s)	280
PspN4I	GGNNCC	2 cut(s)	118, 291
PspPI	GGNCC	1 cut(s)	230
PspXI	VCTCGAGB	1 cut(s)	338
PsuI	RGATCY	1 cut(s)	289
SapI	GCTCTTC	1 cut(s)	38
SatI	GCNGC	3 cut(s)	99, 102, 105
Sau3AI	GATC	4 cut(s)	11, 163, 243, 289
Sau96I	GGNCC	1 cut(s)	230
SchI	GAGTC	2 cut(s)	246, 330
SduI	GDGCHC	2 cut(s)	50, 119
SetI	ASST	4 cut(s)	126, 198, 263, 282
Sfr274I	CTCGAG	1 cut(s)	338
SgrAI	CRCCGGYG	1 cut(s)	56
SinI	GGWCC	1 cut(s)	230
SlaI	CTCGAG	1 cut(s)	338
SmlI	CTYRAG	1 cut(s)	338
SmoI	CTYRAG	1 cut(s)	338
Sse9I	AATT	1 cut(s)	206
SsiI	CCGC	5 cut(s)	96, 99, 102, 105, 138
StyI	CCWWGG	2 cut(s)	85, 297
TaaI	ACNGT	1 cut(s)	234
TaiI	ACGT	1 cut(s)	126
TaqI	TCGA	3 cut(s)	14, 334, 339
TasI	AATT	1 cut(s)	206
TauI	GCSGC	3 cut(s)	101, 104, 107
TfiI	GAWTC	1 cut(s)	310
TseFI	GTSAC	1 cut(s)	124
Tsp45I	GTSAC	1 cut(s)	124
TspDTI	ATGAA	1 cut(s)	35
VpaK11BI	GGWCC	1 cut(s)	230
XhoI	CTCGAG	1 cut(s)	338
XmnI	GAANNNNTTC	1 cut(s)	26
ZraI	GACGTC	1 cut(s)	124

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.