Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0016075

Physical Location & Seq

Genomic Coordinates Reverse (-)

14729385 .. 14730350

Gene Structure 966 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g22780.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 339 bp

ATGGCGACGAAATCGAACATGAAGGGTTTCTACAAGCAGAAGAAGACCGGTATCTCCAAGAAGAAGGCCTCCCCCTCCGCCTCTCTCGGCTCCAAAGTCACTCAACCCTCCGCCCTCATCTCCCACGCCGCTCCTGATCTCAAAGATGATTATGATGCGCAAGAGGAGCTGCTGAGGCAGTTTGATCTGAACACGGCATACGGACCGTGCCTTGGGATTACTAGGCTGGCGCGGTGGGAGCGTGCTTGCAGGCTGGGGATGGATCCTCCGAAAGAAGTGGAGAGTCTTTTGAAAGGTGGCAAGGTTAGGCTCGATTCCTTGTGGGATGGTCGCATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000731 GO:0003674 GO:0003824 GO:0003887 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006281 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019438 GO:0030894 GO:0031974 GO:0031981 GO:0032991 GO:0032993 GO:0033554 GO:0034061 GO:0034641 GO:0034645 GO:0034654 GO:0042575 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043596 GO:0043601 GO:0043625 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0050896 GO:0051716 GO:0061695 GO:0070013 GO:0071704 GO:0071897 GO:0090304 GO:0140097 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03030 ko03410 ko03420 ko03430 ko03440 ko05166 map00230 map00240 map01100 map03030 map03410 map03420 map03430 map03440 map05166

Pfam Domains

Protein Families

DNA_pol_delta_4

Protein Analysis

113

Amino Acids

12.38

Weight (kDa)

9.58

Isoelectric Point (pI)

44.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DNA_pol_delta_4	PF04081	48 - 98	2.3e-18	DNA polymerase delta, subunit 4

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0016075)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09815
fragaria_vesca	FvH4_1g22780
malus_domestica	MD07G1311000.v1.1
prunus_persica	Prupe.2G330200_v2.0.a1
pyrus_communis	pycom07g28330
rosa_chinensis	RchiOBHm_Chr2g0117101
rosa_laevigata	RLG00000018329
rosa_multiflora	Rmu_sc0027522.1_g000001
rosa_roxburghii	Rroxscaffold_2G00126710
rosa_rugosa	Rorug02G0210500
rosa_samantha	Rh2AG266200 Rh2BG278200 Rh2DG273400 Rh2DG292500
rosa_wichuraiana	Rw2G021010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	159
AccBSI	CCGCTC	1 cut(s)	131
AccII	CGCG	1 cut(s)	232
AciI	CCGC	4 cut(s)	78, 111, 129, 232
AclWI	GGATC	2 cut(s)	257, 270
AfiI	CCNNNNNNNGG	1 cut(s)	212
AgeI	ACCGGT	1 cut(s)	47
AgsI	TTSAA	1 cut(s)	292
AluBI	AGCT	1 cut(s)	169
AluI	AGCT	1 cut(s)	169
AlwI	GGATC	2 cut(s)	257, 270
AoxI	GGCC	1 cut(s)	66
ApeKI	GCWGC	1 cut(s)	169
AsiGI	ACCGGT	1 cut(s)	47
Asp700I	GAANNNNTTC	1 cut(s)	26
AspLEI	GCGC	2 cut(s)	160, 232
AspS9I	GGNCC	1 cut(s)	203
AvaII	GGWCC	1 cut(s)	203
BamHI	GGATCC	1 cut(s)	262
BarI	GAAGNNNNNNTAC	2 cut(s)	14, 46
BbsI	GAAGAC	1 cut(s)	50
BbvCI	CCTCAGC	1 cut(s)	173
BbvI	GCAGC	1 cut(s)	156
BccI	CCATC	2 cut(s)	253, 320
BceAI	ACGGC	1 cut(s)	210
BfaI	CTAG	1 cut(s)	222
BisI	GCNGC	2 cut(s)	129, 170
BlsI	GCNGC	2 cut(s)	130, 171
Bme18I	GGWCC	1 cut(s)	203
BmgT120I	GGNCC	1 cut(s)	203
BmiI	GGNNCC	2 cut(s)	91, 264
BmsI	GCATC	1 cut(s)	145
BpiI	GAAGAC	1 cut(s)	50
Bpu10I	CCTNAGC	1 cut(s)	173
BsaJI	CCNNGG	1 cut(s)	211
BsaWI	WCCGGW	1 cut(s)	47
Bsc4I	CCNNNNNNNGG	1 cut(s)	212
Bse118I	RCCGGY	1 cut(s)	47
BseDI	CCNNGG	1 cut(s)	211
BseGI	GGATG	2 cut(s)	264, 331
BseLI	CCNNNNNNNGG	1 cut(s)	212
BseMII	CTCAG	1 cut(s)	164
BseRI	GAGGAG	1 cut(s)	179
BseXI	GCAGC	1 cut(s)	156
BseYI	CCCAGC	1 cut(s)	253
Bsh1236I	CGCG	1 cut(s)	232
BshFI	GGCC	1 cut(s)	68
BshTI	ACCGGT	1 cut(s)	47
BsiSI	CCGG	1 cut(s)	48
BslI	CCNNNNNNNGG	1 cut(s)	212
BsnI	GGCC	1 cut(s)	68
Bsp143I	GATC	3 cut(s)	136, 184, 262
BspACI	CCGC	4 cut(s)	78, 111, 129, 232
BspANI	GGCC	1 cut(s)	68
BspCNI	CTCAG	1 cut(s)	165
BspFNI	CGCG	1 cut(s)	232
BspLI	GGNNCC	2 cut(s)	91, 264
BspPI	GGATC	2 cut(s)	257, 270
BsrBI	CCGCTC	1 cut(s)	131
BsrFI	RCCGGY	1 cut(s)	47
BssAI	RCCGGY	1 cut(s)	47
BssECI	CCNNGG	1 cut(s)	211
BssMI	GATC	3 cut(s)	136, 184, 262
BssT1I	CCWWGG	1 cut(s)	211
Bst4CI	ACNGT	1 cut(s)	207
BstC8I	GCNNGC	4 cut(s)	228, 243, 247, 251
BstDEI	CTNAG	1 cut(s)	173
BstF5I	GGATG	2 cut(s)	264, 331
BstFNI	CGCG	1 cut(s)	232
BstHHI	GCGC	2 cut(s)	160, 232
BstKTI	GATC	3 cut(s)	139, 187, 265
BstMBI	GATC	3 cut(s)	136, 184, 262
BstMWI	GCNNNNNNNGC	3 cut(s)	166, 175, 238
BstUI	CGCG	1 cut(s)	232
BstV1I	GCAGC	1 cut(s)	156
BstV2I	GAAGAC	1 cut(s)	50
BstX2I	RGATCY	1 cut(s)	262
BstYI	RGATCY	1 cut(s)	262
BsuRI	GGCC	1 cut(s)	68
BtsCI	GGATG	2 cut(s)	264, 331
Cac8I	GCNNGC	4 cut(s)	228, 243, 247, 251
CfoI	GCGC	2 cut(s)	160, 232
Cfr10I	RCCGGY	1 cut(s)	47
Cfr13I	GGNCC	1 cut(s)	203
CpoI	CGGWCCG	1 cut(s)	203
CspAI	ACCGGT	1 cut(s)	47
CspI	CGGWCCG	1 cut(s)	203
CviAII	CATG	1 cut(s)	19
CviJI	RGCY	6 cut(s)	68, 90, 169, 226, 253, 310
CviKI_1	RGCY	6 cut(s)	68, 90, 169, 226, 253, 310
DdeI	CTNAG	1 cut(s)	173
DpnI	GATC	3 cut(s)	138, 186, 264
DpnII	GATC	3 cut(s)	136, 184, 262
EciI	GGCGGA	2 cut(s)	67, 100
Eco130I	CCWWGG	1 cut(s)	211
Eco147I	AGGCCT	1 cut(s)	68
Eco47I	GGWCC	1 cut(s)	203
EcoT14I	CCWWGG	1 cut(s)	211
ErhI	CCWWGG	1 cut(s)	211
FaeI	CATG	1 cut(s)	22
FaiI	YATR	3 cut(s)	20, 153, 199
FatI	CATG	1 cut(s)	18
Fnu4HI	GCNGC	2 cut(s)	129, 170
FokI	GGATG	1 cut(s)	271
Fsp4HI	GCNGC	2 cut(s)	129, 170
FspBI	CTAG	1 cut(s)	222
FspI	TGCGCA	1 cut(s)	159
GlaI	GCGC	2 cut(s)	159, 231
GluI	GCNGC	2 cut(s)	129, 170
GsaI	CCCAGC	1 cut(s)	257
HaeIII	GGCC	1 cut(s)	68
HapII	CCGG	1 cut(s)	48
HhaI	GCGC	2 cut(s)	160, 232
Hin1II	CATG	1 cut(s)	22
Hin6I	GCGC	2 cut(s)	158, 230
HinP1I	GCGC	2 cut(s)	158, 230
HinfI	GANTC	2 cut(s)	283, 314
HpaII	CCGG	1 cut(s)	48
Hpy188I	TCNGA	2 cut(s)	189, 270
Hpy188III	TCNNGA	1 cut(s)	134
Hpy99I	CGWCG	1 cut(s)	10
HpyAV	CCTTC	2 cut(s)	16, 58
HpyCH4III	ACNGT	1 cut(s)	207
HpyCH4V	TGCA	1 cut(s)	249
HpyF10VI	GCNNNNNNNGC	3 cut(s)	166, 175, 238
HpyF3I	CTNAG	1 cut(s)	173
Hsp92II	CATG	1 cut(s)	22
HspAI	GCGC	2 cut(s)	158, 230
Kzo9I	GATC	3 cut(s)	136, 184, 262
LmnI	GCTCC	4 cut(s)	95, 136, 166, 238
LpnPI	CCDG	5 cut(s)	61, 147, 212, 235, 239
Lsp1109I	GCAGC	1 cut(s)	156
LweI	GCATC	1 cut(s)	145
MaeI	CTAG	1 cut(s)	222
MaeIII	GTNAC	1 cut(s)	97
MalI	GATC	3 cut(s)	138, 186, 264
MbiI	CCGCTC	1 cut(s)	131
MboI	GATC	3 cut(s)	136, 184, 262
MboII	GAAGA	3 cut(s)	52, 55, 73
MflI	RGATCY	1 cut(s)	262
MlyI	GAGTC	1 cut(s)	292
MnlI	CCTC	8 cut(s)	79, 85, 91, 118, 125, 157, 168, 276
MroXI	GAANNNNTTC	1 cut(s)	26
MspI	CCGG	1 cut(s)	48
MvnI	CGCG	1 cut(s)	232
MwoI	GCNNNNNNNGC	3 cut(s)	166, 175, 238
NdeII	GATC	3 cut(s)	136, 184, 262
NlaIII	CATG	1 cut(s)	22
NlaIV	GGNNCC	2 cut(s)	91, 264
NmeAIII	GCCGAG	1 cut(s)	66
NmuCI	GTSAC	1 cut(s)	97
NsbI	TGCGCA	1 cut(s)	159
PceI	AGGCCT	1 cut(s)	68
PdmI	GAANNNNTTC	1 cut(s)	26
PfeI	GAWTC	1 cut(s)	314
PinAI	ACCGGT	1 cut(s)	47
PkrI	GCNGC	2 cut(s)	130, 171
PleI	GAGTC	1 cut(s)	291
PpsI	GAGTC	1 cut(s)	291
PspFI	CCCAGC	1 cut(s)	253
PspN4I	GGNNCC	2 cut(s)	91, 264
PspPI	GGNCC	1 cut(s)	203
PsrI	GAACNNNNNNTAC	2 cut(s)	182, 214
PsuI	RGATCY	1 cut(s)	262
Rsr2I	CGGWCCG	1 cut(s)	203
RsrII	CGGWCCG	1 cut(s)	203
SatI	GCNGC	2 cut(s)	129, 170
Sau3AI	GATC	3 cut(s)	136, 184, 262
Sau96I	GGNCC	1 cut(s)	203
SchI	GAGTC	1 cut(s)	292
SetI	ASST	3 cut(s)	171, 298, 306
SfaNI	GCATC	1 cut(s)	145
SinI	GGWCC	1 cut(s)	203
SseBI	AGGCCT	1 cut(s)	68
SsiI	CCGC	4 cut(s)	78, 111, 129, 232
SspMI	CTAG	1 cut(s)	222
StuI	AGGCCT	1 cut(s)	68
StyI	CCWWGG	1 cut(s)	211
TaaI	ACNGT	1 cut(s)	207
TaqI	TCGA	2 cut(s)	14, 312
TauI	GCSGC	1 cut(s)	131
TfiI	GAWTC	1 cut(s)	314
TseFI	GTSAC	1 cut(s)	97
TseI	GCWGC	1 cut(s)	169
Tsp45I	GTSAC	1 cut(s)	97
TspDTI	ATGAA	1 cut(s)	35
TspGWI	ACGGA	1 cut(s)	216
VpaK11BI	GGWCC	1 cut(s)	203
XmnI	GAANNNNTTC	1 cut(s)	26
XspI	CTAG	1 cut(s)	222

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.