AT1G09900

pentatricopeptide

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0012995
Physical Location & Seq
Forward (+)
3218133 .. 3219929
1797 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G09900.1

Sequence Viewer

Length: 1797 bp
ATGGATTTGATGGTGTCCACAAGCAGTGCTCAAGAAGGGTTTTGCTTGATTCAACAATTTCATCGCGAATATAAACGAGGTAATAAGCTTGACGTCTCATGTCGTACTTCTGGTAGTATTAGTTCTAAAATCCCTCTTGGGTCACGAAAAAGGAATCGACTTGTTCTGGTTTCTGCGGCTTCTAAGGTTGAGAGTTCAGGTCTTAATGGTAGAGCTCAAAAGTTCGAAACTTTGTCCTCTGGGTATAGCAATAGTAACGGAAATGGTCATTATAGCTCTGTGAATTCGTCTTTTGCGTTGGAAGATGTCGAGAGTAATAACCATTTGCGTCAGATGGTTAGAACCGGTGAATTGGAGGAAGGGTTTAAGTTTCTAGAGAACATGGTTTATCACGGTAATGTTCCTGATATCATTCCGTGCACGACATTGATTCGCGGATTCTGTAGGTTGGGTAAGACGAGGAAAGCTGCAAAGATCTTGGAGATTCTTGAAGGCTCTGGTGCTGTTCCTGATGTTATAACTTACAATGTTATGATTAGTGGGTATTGCAAAGCTGGGGAGATCAATAACGCGTTATCTGTTCTTGATAGAATGAGTGTTTCGCCGGATGTTGTCACTTATAATACCATCTTGCGTTCTCTTTGCGATAGTGGGAAACTTAAGCAAGCCATGGAGGTTCTTGATAGGATGCTTCAGAGAGACTGTTATCCAGATGTGATTACTTACACTATATTGATTGAAGCTACTTGCAGAGATAGTGGTGTGGGACATGCGATGAAGCTTCTCGATGAAATGAGGGATAGAGGATGTACTCCTGATGTTGTGACTTACAACGTTCTTGTGAATGGTATTTGTAAAGAGGGGAGATTGGATGAGGCCATTAAGTTTTTGAATGACATGCCGTCTTCTGGATGTCAACCAAATGTTATTACACATAACATAATTCTGCGGAGTATGTGTAGTACTGGGAGATGGATGGATGCAGAGAAGCTTCTTGCTGATATGCTTCGTAAAGGCTTTTCGCCAAGCGTTGTCACTTTCAATATCTTGATTAATTTCTTGTGTAGAAAAGGTTTGCTTGGCCGAGCGATTGACATATTGGAGAAGATGCCTCAACATGGATGTCAGCCGAATTCTTTGAGTTACAACCCGCTGCTTCACGGGTTTTGCAAGGAGAAAAAGATGGATAGGGCTATCGAGTATTTGGAGAGAATGGTTTCTCGTGGTTGTTATCCAGACATTGTCACCTACAACACTATGCTAACAGCTTTGTGCAAAGATGGGAAAGTTGAAGATGCGGTTGAGATACTTAATCAACTTAGTAGCAAGGGATGTTCTCCTGTTCTAATCACTTATAATACTGTCATTGATGGGCTTGCAAAAGCTGGTAAAACTGGCAAAGCGATAAAACTGCTAGATGAGATGCGTGCGAAAGATTTAAAGCCTGACACTATCACCTATTCCTCTCTTGTTGGAGGTTTAAGCAGGGAAGGAAAAGTAGACGAAGCCATTAAGTTTTTCCATGAGTTTGAGCGGATGGGCATTAGGCCAAATGCAGTCACCTTTAATTCTATCATGCTTGGACTCTGTAAGAGTCGGCAAACAGATCGTGCCATCGATTTCTTGGTTTTTATGATCAACAGAGGGTGTAAACCGAATGAAACATCATACACGATTCTGATAGAAGGCTTAGCTTATGAAGGTATGGCAAAGGAAGCTTTGGAGCTGCTTAATGAGCTTTGTAACAAGGGACTCATGAAGAAAAGCTCTGCTGAGCAAGTTGCAGGGAAGATGTAG

Protein Analysis

598

Amino Acids

66.26

Weight (kDa)

8.52

Isoelectric Point (pI)

33.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_3 PF13812 125 - 182 4.2e-08 Pentatricopeptide repeat domain
PPR_2 PF13041 135 - 184 7.4e-12 PPR repeat family
PPR_1 PF12854 167 - 199 1e-12 PPR repeat
PPR_2 PF13041 170 - 199 4.7e-08 PPR repeat family
PPR PF01535 173 - 198 8.8e-08 PPR repeat
PPR_3 PF13812 196 - 248 2.1e-10 Pentatricopeptide repeat domain
PPR_1 PF12854 200 - 230 2.1e-11 PPR repeat
PPR_2 PF13041 202 - 251 7.4e-18 PPR repeat family
PPR PF01535 205 - 235 1.9e-06 PPR repeat
TPR_24 PF23276 211 - 331 2.3e-08 Fungal tetratrico peptide repeats
PPR_1 PF12854 234 - 266 3.8e-09 PPR repeat
PPR_2 PF13041 250 - 286 6.2e-11 PPR repeat family
PPR_3 PF13812 260 - 317 8.6e-11 Pentatricopeptide repeat domain
PPR_1 PF12854 268 - 300 2.7e-15 PPR repeat
PPR_2 PF13041 272 - 320 5.9e-19 PPR repeat family
PPR PF01535 275 - 305 6e-08 PPR repeat
PPR_1 PF12854 304 - 335 2.1e-08 PPR repeat
PPR_2 PF13041 308 - 356 8.9e-14 PPR repeat family
PPR_3 PF13812 330 - 388 2.6e-10 Pentatricopeptide repeat domain
PPR_long PF17177 330 - 441 5.6e-09 Pentacotripeptide-repeat region of PRORP
TPR_24 PF23276 334 - 438 6.6e-08 Fungal tetratrico peptide repeats
PPR_1 PF12854 338 - 370 6.9e-11 PPR repeat
PPR_2 PF13041 342 - 391 1.9e-15 PPR repeat family
PPR PF01535 345 - 375 5.2e-06 PPR repeat
PPR_1 PF12854 374 - 406 5.8e-09 PPR repeat
PPR_2 PF13041 378 - 426 4.3e-16 PPR repeat family
PPR_3 PF13812 381 - 422 3.2e-06 Pentatricopeptide repeat domain
PPR PF01535 381 - 410 1.8e-06 PPR repeat
PPR_long PF17177 395 - 490 1.3e-06 Pentacotripeptide-repeat region of PRORP
PPR_3 PF13812 402 - 457 4e-11 Pentatricopeptide repeat domain
PPR_1 PF12854 408 - 439 4.7e-12 PPR repeat
PPR_2 PF13041 412 - 461 1.5e-16 PPR repeat family
PPR PF01535 415 - 445 6.1e-08 PPR repeat
TPR_24 PF23276 433 - 540 3.8e-06 Fungal tetratrico peptide repeats
PPR_1 PF12854 443 - 476 1.7e-11 PPR repeat
PPR_2 PF13041 449 - 495 1.4e-14 PPR repeat family
PPR PF01535 450 - 479 1.1e-07 PPR repeat
PPR_long PF17177 467 - 584 7.1e-09 Pentacotripeptide-repeat region of PRORP
PPR_3 PF13812 470 - 526 9.5e-11 Pentatricopeptide repeat domain
PPR_1 PF12854 478 - 509 1.2e-09 PPR repeat
PPR PF01535 485 - 515 2e-06 PPR repeat
PPR_2 PF13041 490 - 531 3e-10 PPR repeat family
PPR_1 PF12854 513 - 545 2.6e-06 PPR repeat
PPR_2 PF13041 517 - 565 2.4e-14 PPR repeat family
PPR_1 PF12854 548 - 579 6.4e-07 PPR repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0012995)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G09900
fragaria_vesca FvH4_5g34030
malus_domestica MD08G1206600.v1.1 MD15G1390100.v1.1
prunus_persica Prupe.1G539000_v2.0.a1 Prupe.1G539000_v2.0.a1
pyrus_communis pycom08g17840 pycom15g34930
rosa_chinensis RchiOBHm_Chr7g0233521
rosa_laevigata RLG00000001253
rosa_multiflora Rmu_sc0000029.1_g000012
rosa_roxburghii Rroxscaffold_3G00227230
rosa_rugosa Rorug07G0281100.1
rosa_samantha Rh7AG437500 Rh7BG410000 Rh7CG457100 Rh7DG426500
rosa_wichuraiana Rw7G036080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 3 cut(s) 518, 621, 1356
AatII GACGTC 1 cut(s) 96
AccBSI CCGCTC 1 cut(s) 1534
AccI GTMKAC 1 cut(s) 1500
AccII CGCG 3 cut(s) 66, 435, 572
AciI CCGC 6 cut(s) 176, 435, 949, 1151, 1298, 1534
AclI AACGTT 1 cut(s) 834
AcoI YGGCCR 1 cut(s) 1081
AcsI RAATTY 2 cut(s) 283, 1132
AcuI CTGAAG 1 cut(s) 677
AcyI GRCGYC 1 cut(s) 93
AfaI GTAC 3 cut(s) 106, 811, 964
AfiI CCNNNNNNNGG 2 cut(s) 908, 1118
AflII CTTAAG 1 cut(s) 659
AflIII ACRYGT 1 cut(s) 570
AgeI ACCGGT 1 cut(s) 344
AgsI TTSAA 6 cut(s) 53, 491, 740, 892, 1042, 1292
AhdI GACNNNNNGTC 1 cut(s) 901
Alw21I GWGCWC 3 cut(s) 31, 217, 422
Alw26I GTCTC 2 cut(s) 100, 693
Alw44I GTGCAC 1 cut(s) 418
AoxI GGCC 3 cut(s) 876, 1081, 1547
ApaLI GTGCAC 1 cut(s) 418
ApeKI GCWGC 3 cut(s) 467, 1153, 1726
ApoI RAATTY 2 cut(s) 283, 1132
AseI ATTAAT 1 cut(s) 1053
AsiGI ACCGGT 1 cut(s) 344
Asp700I GAANNNNTTC 1 cut(s) 1216
AsuHPI GGTGA 4 cut(s) 359, 1237, 1447, 1552
AsuII TTCGAA 1 cut(s) 225
BaeGI GKGCMC 1 cut(s) 422
BanII GRGCYC 1 cut(s) 217
BauI CACGAG 1 cut(s) 1221
BbsI GAAGAC 1 cut(s) 897
Bbv12I GWGCWC 3 cut(s) 31, 217, 422
BbvI GCAGC 3 cut(s) 454, 1140, 1713
BceAI ACGGC 1 cut(s) 886
BcgI CGANNNNNNTGC 4 cut(s) 1393, 1427, 1589, 1623
BclI TGATCA 1 cut(s) 1635
BcoDI GTCTC 2 cut(s) 100, 693
BfaI CTAG 2 cut(s) 374, 1415
BfmI CTRYAG 1 cut(s) 442
BfrI CTTAAG 1 cut(s) 659
BglII AGATCT 1 cut(s) 474
BisI GCNGC 4 cut(s) 177, 468, 1154, 1727
BlpI GCTNAGC 2 cut(s) 1690, 1773
BlsI GCNGC 4 cut(s) 178, 469, 1155, 1728
BmcAI AGTACT 1 cut(s) 964
BmeRI GACNNNNNGTC 1 cut(s) 901
BmrI ACTGGG 1 cut(s) 975
BmsI GCATC 5 cut(s) 678, 970, 1098, 1285, 1413
BmuI ACTGGG 1 cut(s) 975
BpiI GAAGAC 1 cut(s) 897
Bpu1102I GCTNAGC 2 cut(s) 1690, 1773
Bpu14I TTCGAA 1 cut(s) 225
BpuEI CTTGAG 1 cut(s) 15
Bsa29I ATCGAT 1 cut(s) 1617
BsaHI GRCGYC 1 cut(s) 93
BsaJI CCNNGG 1 cut(s) 669
BsaWI WCCGGW 1 cut(s) 344
BsaXI ACNNNNNCTCC 4 cut(s) 347, 377, 943, 973
Bsc4I CCNNNNNNNGG 2 cut(s) 908, 1118
Bse118I RCCGGY 1 cut(s) 344
Bse1I ACTGG 2 cut(s) 970, 1399
BseCI ATCGAT 1 cut(s) 1617
BseDI CCNNGG 1 cut(s) 669
BseLI CCNNNNNNNGG 2 cut(s) 908, 1118
BseMII CTCAG 1 cut(s) 1764
BseNI ACTGG 2 cut(s) 970, 1399
BseSI GKGCMC 1 cut(s) 422
BseXI GCAGC 3 cut(s) 454, 1140, 1713
BseYI CCCAGC 1 cut(s) 554
Bsh1236I CGCG 3 cut(s) 66, 435, 572
BshFI GGCC 3 cut(s) 878, 1083, 1549
BshTI ACCGGT 1 cut(s) 344
BshVI ATCGAT 1 cut(s) 1617
BsiHKAI GWGCWC 3 cut(s) 31, 217, 422
BsiSI CCGG 2 cut(s) 345, 605
BslFI GGGAC 2 cut(s) 780, 1764
BslI CCNNNNNNNGG 2 cut(s) 908, 1118
BsmAI GTCTC 2 cut(s) 100, 693
BsmBI CGTCTC 1 cut(s) 100
BsmFI GGGAC 2 cut(s) 780, 1764
BsnI GGCC 3 cut(s) 878, 1083, 1549
Bsp119I TTCGAA 1 cut(s) 225
Bsp1286I GDGCHC 3 cut(s) 31, 217, 422
Bsp143I GATC 4 cut(s) 474, 561, 1606, 1635
Bsp1720I GCTNAGC 2 cut(s) 1690, 1773
Bsp19I CCATGG 1 cut(s) 669
Bsp68I TCGCGA 1 cut(s) 66
BspACI CCGC 6 cut(s) 176, 435, 949, 1151, 1298, 1534
BspANI GGCC 3 cut(s) 878, 1083, 1549
BspCNI CTCAG 1 cut(s) 1765
BspDI ATCGAT 1 cut(s) 1617
BspFNI CGCG 3 cut(s) 66, 435, 572
BspHI TCATGA 1 cut(s) 1755
BspT104I TTCGAA 1 cut(s) 225
BspTI CTTAAG 1 cut(s) 659
BsrBI CCGCTC 1 cut(s) 1534
BsrFI RCCGGY 1 cut(s) 344
BsrI ACTGG 2 cut(s) 970, 1399
BssAI RCCGGY 1 cut(s) 344
BssECI CCNNGG 1 cut(s) 669
BssMI GATC 4 cut(s) 474, 561, 1606, 1635
BssNI GRCGYC 1 cut(s) 93
BssSI CACGAG 1 cut(s) 1221
BssT1I CCWWGG 1 cut(s) 669
Bst2BI CACGAG 1 cut(s) 1221
Bst4CI ACNGT 3 cut(s) 395, 704, 1363
BstACI GRCGYC 1 cut(s) 93
BstAFI CTTAAG 1 cut(s) 659
BstBI TTCGAA 1 cut(s) 225
BstC8I GCNNGC 3 cut(s) 666, 1377, 1428
BstDEI CTNAG 4 cut(s) 183, 1319, 1690, 1773
BstDSI CCRYGG 1 cut(s) 669
BstFNI CGCG 3 cut(s) 66, 435, 572
BstKTI GATC 4 cut(s) 477, 564, 1609, 1638
BstMAI GTCTC 2 cut(s) 100, 693
BstMBI GATC 4 cut(s) 474, 561, 1606, 1635
BstMWI GCNNNNNNNGC 2 cut(s) 1715, 1735
BstNSI RCATGY 2 cut(s) 773, 901
BstSFI CTRYAG 1 cut(s) 442
BstSLI GKGCMC 1 cut(s) 422
BstUI CGCG 3 cut(s) 66, 435, 572
BstV1I GCAGC 3 cut(s) 454, 1140, 1713
BstV2I GAAGAC 1 cut(s) 897
BstX2I RGATCY 1 cut(s) 474
BstYI RGATCY 1 cut(s) 474
Bsu15I ATCGAT 1 cut(s) 1617
BsuRI GGCC 3 cut(s) 878, 1083, 1549
BsuTUI ATCGAT 1 cut(s) 1617
BtgI CCRYGG 1 cut(s) 669
BtgZI GCGATG 2 cut(s) 47, 788
BtsI GCAGTG 1 cut(s) 31
BtsIMutI CAGTG 1 cut(s) 31
BtuMI TCGCGA 1 cut(s) 66
Cac8I GCNNGC 3 cut(s) 666, 1377, 1428
CciI TCATGA 1 cut(s) 1755
Cfr10I RCCGGY 1 cut(s) 344
ClaI ATCGAT 1 cut(s) 1617
CseI GACGC 1 cut(s) 317
Csp6I GTAC 3 cut(s) 105, 810, 963
CspAI ACCGGT 1 cut(s) 344
CviAII CATG 9 cut(s) 99, 382, 670, 770, 898, 1118, 1523, 1576, 1756
CviQI GTAC 3 cut(s) 105, 810, 963
DdeI CTNAG 4 cut(s) 183, 1319, 1690, 1773
DpnI GATC 4 cut(s) 476, 563, 1608, 1637
DpnII GATC 4 cut(s) 474, 561, 1606, 1635
DraI TTTAAA 1 cut(s) 1440
DriI GACNNNNNGTC 1 cut(s) 901
EaeI YGGCCR 1 cut(s) 1081
Eam1105I GACNNNNNGTC 1 cut(s) 901
Ecl136II GAGCTC 1 cut(s) 215
Eco130I CCWWGG 1 cut(s) 669
Eco24I GRGCYC 1 cut(s) 217
Eco32I GATATC 1 cut(s) 409
Eco53kI GAGCTC 1 cut(s) 215
Eco57I CTGAAG 1 cut(s) 677
EcoICRI GAGCTC 1 cut(s) 215
EcoRI GAATTC 2 cut(s) 283, 1132
EcoRV GATATC 1 cut(s) 409
EcoT14I CCWWGG 1 cut(s) 669
EcoT38I GRGCYC 1 cut(s) 217
ErhI CCWWGG 1 cut(s) 669
Esp3I CGTCTC 1 cut(s) 100
FaeI CATG 9 cut(s) 102, 385, 673, 773, 901, 1121, 1526, 1579, 1759
FalI AAGNNNNNCTT 2 cut(s) 1062, 1094
FaqI GGGAC 2 cut(s) 780, 1764
FatI CATG 9 cut(s) 98, 381, 669, 769, 897, 1117, 1522, 1575, 1755
FauI CCCGC 1 cut(s) 1158
FbaI TGATCA 1 cut(s) 1635
FblI GTMKAC 1 cut(s) 1500
Fnu4HI GCNGC 4 cut(s) 177, 468, 1154, 1727
FriOI GRGCYC 1 cut(s) 217
Fsp4HI GCNGC 4 cut(s) 177, 468, 1154, 1727
FspBI CTAG 2 cut(s) 374, 1415
GluI GCNGC 4 cut(s) 177, 468, 1154, 1727
GsaI CCCAGC 1 cut(s) 558
HaeIII GGCC 3 cut(s) 878, 1083, 1549
HapII CCGG 2 cut(s) 345, 605
HgaI GACGC 1 cut(s) 317
Hin1I GRCGYC 1 cut(s) 93
Hin1II CATG 9 cut(s) 102, 385, 673, 773, 901, 1121, 1526, 1579, 1759
HincII GTYRAC 1 cut(s) 917
HindII GTYRAC 1 cut(s) 917
HindIII AAGCTT 4 cut(s) 86, 779, 989, 1716
HinfI GANTC 9 cut(s) 49, 154, 430, 438, 484, 1584, 1594, 1675, 1752
HpaII CCGG 2 cut(s) 345, 605
HphI GGTGA 4 cut(s) 359, 1237, 1447, 1552
Hpy166II GTNNAC 5 cut(s) 18, 420, 917, 1501, 1652
Hpy188I TCNGA 3 cut(s) 333, 696, 1680
Hpy8I GTNNAC 5 cut(s) 18, 420, 917, 1501, 1652
HpyAV CCTTC 6 cut(s) 29, 353, 485, 1484, 1679, 1694
HpyCH4III ACNGT 3 cut(s) 395, 704, 1363
HpyCH4IV ACGT 2 cut(s) 93, 834
HpyF10VI GCNNNNNNNGC 2 cut(s) 1715, 1735
HpyF3I CTNAG 4 cut(s) 183, 1319, 1690, 1773
HpySE526I ACGT 2 cut(s) 93, 834
Hsp92I GRCGYC 1 cut(s) 93
Hsp92II CATG 9 cut(s) 102, 385, 673, 773, 901, 1121, 1526, 1579, 1759
Ksp22I TGATCA 1 cut(s) 1635
Kzo9I GATC 4 cut(s) 474, 561, 1606, 1635
LmnI GCTCC 1 cut(s) 1723
Lsp1109I GCAGC 3 cut(s) 454, 1140, 1713
LweI GCATC 5 cut(s) 678, 970, 1098, 1285, 1413
MaeI CTAG 2 cut(s) 374, 1415
MaeII ACGT 2 cut(s) 93, 834
MaeIII GTNAC 9 cut(s) 141, 254, 613, 823, 1033, 1142, 1243, 1558, 1742
MalI GATC 4 cut(s) 476, 563, 1608, 1637
MbiI CCGCTC 1 cut(s) 1534
MboI GATC 4 cut(s) 474, 561, 1606, 1635
MboII GAAGA 5 cut(s) 314, 897, 1117, 1304, 1771
MflI RGATCY 1 cut(s) 474
MhlI GDGCHC 3 cut(s) 31, 217, 422
MluCI AATT 7 cut(s) 56, 283, 350, 942, 1054, 1132, 1567
MluI ACGCGT 1 cut(s) 570
MlyI GAGTC 3 cut(s) 1578, 1603, 1746
MmeI TCCRAC 2 cut(s) 279, 1453
MroXI GAANNNNTTC 1 cut(s) 1216
MslI CAYNNNNRTG 1 cut(s) 396
MspA1I CMGCKG 1 cut(s) 1153
MspCI CTTAAG 1 cut(s) 659
MspI CCGG 2 cut(s) 345, 605
MvnI CGCG 3 cut(s) 66, 435, 572
MwoI GCNNNNNNNGC 2 cut(s) 1715, 1735
NcoI CCATGG 1 cut(s) 669
NdeII GATC 4 cut(s) 474, 561, 1606, 1635
NlaIII CATG 9 cut(s) 102, 385, 673, 773, 901, 1121, 1526, 1579, 1759
NmeAIII GCCGAG 1 cut(s) 1109
NmuCI GTSAC 6 cut(s) 141, 613, 823, 1033, 1243, 1558
NruI TCGCGA 1 cut(s) 66
NspI RCATGY 2 cut(s) 773, 901
NspV TTCGAA 1 cut(s) 225
PagI TCATGA 1 cut(s) 1755
PcsI WCGNNNNNNNCGW 1 cut(s) 293
PdmI GAANNNNTTC 1 cut(s) 1216
PfeI GAWTC 6 cut(s) 49, 154, 430, 438, 484, 1675
PflFI GACNNNGTC 1 cut(s) 1241
PinAI ACCGGT 1 cut(s) 344
PkrI GCNGC 4 cut(s) 178, 469, 1155, 1728
PleI GAGTC 3 cut(s) 1578, 1602, 1746
PpsI GAGTC 3 cut(s) 1578, 1602, 1746
PshBI ATTAAT 1 cut(s) 1053
PsiI TTATAA 3 cut(s) 518, 621, 1356
Psp124BI GAGCTC 1 cut(s) 217
Psp1406I AACGTT 1 cut(s) 834
PspFI CCCAGC 1 cut(s) 554
PsrI GAACNNNNNNTAC 2 cut(s) 106, 138
PsuI RGATCY 1 cut(s) 474
PsyI GACNNNGTC 1 cut(s) 1241
RruI TCGCGA 1 cut(s) 66
RsaI GTAC 3 cut(s) 106, 811, 964
RsaNI GTAC 3 cut(s) 105, 810, 963
RseI CAYNNNNRTG 1 cut(s) 396
SacI GAGCTC 1 cut(s) 217
SatI GCNGC 4 cut(s) 177, 468, 1154, 1727
Sau3AI GATC 4 cut(s) 474, 561, 1606, 1635
ScaI AGTACT 1 cut(s) 964
SchI GAGTC 3 cut(s) 1578, 1603, 1746
SduI GDGCHC 3 cut(s) 31, 217, 422
SfaNI GCATC 5 cut(s) 678, 970, 1098, 1285, 1413
SfcI CTRYAG 1 cut(s) 442
SfuI TTCGAA 1 cut(s) 225
SmiMI CAYNNNNRTG 1 cut(s) 396
SmlI CTYRAG 2 cut(s) 30, 659
SmoI CTYRAG 2 cut(s) 30, 659
Sse9I AATT 7 cut(s) 56, 283, 350, 942, 1054, 1132, 1567
SsiI CCGC 6 cut(s) 176, 435, 949, 1151, 1298, 1534
SspMI CTAG 2 cut(s) 374, 1415
SstI GAGCTC 1 cut(s) 217
StyI CCWWGG 1 cut(s) 669
TaaI ACNGT 3 cut(s) 395, 704, 1363
TaiI ACGT 2 cut(s) 96, 837
TaqI TCGA 6 cut(s) 157, 225, 309, 786, 1197, 1617
TasI AATT 7 cut(s) 56, 283, 350, 942, 1054, 1132, 1567
TatI WGTACW 2 cut(s) 809, 962
TauI GCSGC 1 cut(s) 179
TfiI GAWTC 6 cut(s) 49, 154, 430, 438, 484, 1675
TscAI CASTG 1 cut(s) 31
TseFI GTSAC 6 cut(s) 141, 613, 823, 1033, 1243, 1558
TseI GCWGC 3 cut(s) 467, 1153, 1726
Tsp45I GTSAC 6 cut(s) 141, 613, 823, 1033, 1243, 1558
TspDTI ATGAA 6 cut(s) 50, 791, 804, 1674, 1713, 1772
TspGWI ACGGA 2 cut(s) 273, 405
TspRI CASTG 1 cut(s) 31
Tth111I GACNNNGTC 1 cut(s) 1241
Vha464I CTTAAG 1 cut(s) 659
VneI GTGCAC 1 cut(s) 418
VspI ATTAAT 1 cut(s) 1053
XapI RAATTY 2 cut(s) 283, 1132
XbaI TCTAGA 1 cut(s) 373
XceI RCATGY 2 cut(s) 773, 901
XcmI CCANNNNNNNNNTGG 1 cut(s) 1621
XmiI GTMKAC 1 cut(s) 1500
XmnI GAANNNNTTC 1 cut(s) 1216
XspI CTAG 2 cut(s) 374, 1415
ZraI GACGTC 1 cut(s) 94
ZrmI AGTACT 1 cut(s) 964
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.