Pentatricopeptide repeat-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G09900 |
| fragaria_vesca | FvH4_5g34030 |
| malus_domestica | MD08G1206600.v1.1 MD15G1390100.v1.1 |
| prunus_persica | Prupe.1G539000_v2.0.a1 Prupe.1G539000_v2.0.a1 |
| pyrus_communis | pycom08g17840 pycom15g34930 |
| rosa_chinensis | RchiOBHm_Chr7g0233521 |
| rosa_laevigata | RLG00000001253 |
| rosa_multiflora | Rmu_sc0000029.1_g000012 |
| rosa_roxburghii | Rroxscaffold_3G00227230 |
| rosa_rugosa | Rorug07G0281100.1 |
| rosa_samantha | Rh7AG437500 Rh7BG410000 Rh7CG457100 Rh7DG426500 |
| rosa_wichuraiana | Rw7G036080 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 797, 1110 |
| Acc16I | TGCGCA | 1 cut(s) | 1706 |
| AccI | GTMKAC | 2 cut(s) | 533, 1004 |
| AccII | CGCG | 2 cut(s) | 751, 1907 |
| AciI | CCGC | 4 cut(s) | 118, 170, 191, 751 |
| AcsI | RAATTY | 3 cut(s) | 584, 1163, 1411 |
| AcuI | CTGAAG | 1 cut(s) | 1959 |
| AfaI | GTAC | 5 cut(s) | 474, 700, 916, 1405, 1800 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 372, 513, 543, 544, 545, 1397 |
| AgsI | TTSAA | 8 cut(s) | 215, 553, 940, 1019, 1171, 1321, 1964, 2011 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 1180 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1340, 1372 |
| Alw21I | GWGCWC | 1 cut(s) | 400 |
| Alw26I | GTCTC | 1 cut(s) | 359 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1296 |
| Ama87I | CYCGRG | 1 cut(s) | 1500 |
| ApeKI | GCWGC | 4 cut(s) | 390, 517, 970, 1239 |
| ApoI | RAATTY | 3 cut(s) | 584, 1163, 1411 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1284 |
| AspLEI | GCGC | 2 cut(s) | 1577, 1707 |
| AspS9I | GGNCC | 2 cut(s) | 37, 865 |
| AsuHPI | GGTGA | 5 cut(s) | 173, 313, 349, 686, 848 |
| AvaI | CYCGRG | 1 cut(s) | 1500 |
| AvaII | GGWCC | 2 cut(s) | 37, 865 |
| BanII | GRGCYC | 2 cut(s) | 400, 1656 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 237, 269 |
| BauI | CACGAG | 1 cut(s) | 1748 |
| Bbv12I | GWGCWC | 1 cut(s) | 400 |
| BbvI | GCAGC | 4 cut(s) | 402, 504, 957, 1251 |
| BccI | CCATC | 9 cut(s) | 413, 812, 943, 1245, 1249, 1456, 1553, 1643, 1859 |
| BceAI | ACGGC | 2 cut(s) | 183, 1165 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1868, 1902 |
| BciVI | GTATCC | 1 cut(s) | 429 |
| BcoDI | GTCTC | 1 cut(s) | 359 |
| BfaI | CTAG | 4 cut(s) | 333, 653, 767, 1305 |
| BfmI | CTRYAG | 2 cut(s) | 518, 2023 |
| BfuI | GTATCC | 1 cut(s) | 429 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 1350 |
| BisI | GCNGC | 5 cut(s) | 171, 391, 518, 971, 1240 |
| BlpI | GCTNAGC | 2 cut(s) | 1760, 1875 |
| BlsI | GCNGC | 5 cut(s) | 172, 392, 519, 972, 1241 |
| Bme18I | GGWCC | 2 cut(s) | 37, 865 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 1180 |
| BmeT110I | CYCGRG | 1 cut(s) | 1500 |
| BmgT120I | GGNCC | 2 cut(s) | 37, 865 |
| BmsI | GCATC | 4 cut(s) | 1076, 1249, 1377, 1692 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 865, 897 |
| BpmI | CTGGAG | 2 cut(s) | 309, 867 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1392 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 1760, 1875 |
| BpuEI | CTTGAG | 1 cut(s) | 1438 |
| Bsa29I | ATCGAT | 1 cut(s) | 816 |
| BsaAI | YACGTR | 1 cut(s) | 1002 |
| BsaI | GGTCTC | 1 cut(s) | 359 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 321, 351 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 372, 513, 543, 544, 545, 1397 |
| Bse1I | ACTGG | 3 cut(s) | 322, 1249, 1888 |
| Bse3DI | GCAATG | 1 cut(s) | 1430 |
| BseCI | ATCGAT | 1 cut(s) | 816 |
| BseGI | GGATG | 6 cut(s) | 1072, 1091, 1156, 1260, 1264, 1931 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 372, 513, 543, 544, 545, 1397 |
| BseMI | GCAATG | 1 cut(s) | 1430 |
| BseNI | ACTGG | 3 cut(s) | 322, 1249, 1888 |
| BseRI | GAGGAG | 1 cut(s) | 1090 |
| BseXI | GCAGC | 4 cut(s) | 402, 504, 957, 1251 |
| BsgI | GTGCAG | 2 cut(s) | 214, 1258 |
| Bsh1236I | CGCG | 2 cut(s) | 751, 1907 |
| BshVI | ATCGAT | 1 cut(s) | 816 |
| BsiHKAI | GWGCWC | 1 cut(s) | 400 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1500 |
| BsiSI | CCGG | 2 cut(s) | 683, 1345 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 372, 513, 543, 544, 545, 1397 |
| BsmAI | GTCTC | 1 cut(s) | 359 |
| BsmI | GAATGC | 1 cut(s) | 423 |
| Bso31I | GGTCTC | 1 cut(s) | 359 |
| BsoBI | CYCGRG | 1 cut(s) | 1500 |
| Bsp1286I | GDGCHC | 2 cut(s) | 400, 1656 |
| Bsp1407I | TGTACA | 1 cut(s) | 1798 |
| Bsp143I | GATC | 3 cut(s) | 18, 813, 961 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 1760, 1875 |
| BspACI | CCGC | 4 cut(s) | 118, 170, 191, 751 |
| BspDI | ATCGAT | 1 cut(s) | 816 |
| BspFNI | CGCG | 2 cut(s) | 751, 1907 |
| BspMAI | CTGCAG | 1 cut(s) | 522 |
| BspTNI | GGTCTC | 1 cut(s) | 359 |
| BsrDI | GCAATG | 1 cut(s) | 1430 |
| BsrGI | TGTACA | 1 cut(s) | 1798 |
| BsrI | ACTGG | 3 cut(s) | 322, 1249, 1888 |
| BssMI | GATC | 3 cut(s) | 18, 813, 961 |
| BssNAI | GTATAC | 2 cut(s) | 534, 1005 |
| BssSI | CACGAG | 1 cut(s) | 1748 |
| Bst1107I | GTATAC | 2 cut(s) | 534, 1005 |
| Bst2BI | CACGAG | 1 cut(s) | 1748 |
| Bst4CI | ACNGT | 2 cut(s) | 446, 1642 |
| Bst6I | CTCTTC | 4 cut(s) | 112, 201, 571, 630 |
| BstAPI | GCANNNNNTGC | 3 cut(s) | 1086, 1611, 1702 |
| BstAUI | TGTACA | 1 cut(s) | 1798 |
| BstBAI | YACGTR | 1 cut(s) | 1002 |
| BstC8I | GCNNGC | 4 cut(s) | 46, 945, 1050, 1091 |
| BstDEI | CTNAG | 5 cut(s) | 1392, 1598, 1684, 1760, 1875 |
| BstEII | GGTNACC | 1 cut(s) | 446 |
| BstF5I | GGATG | 6 cut(s) | 1072, 1091, 1156, 1260, 1264, 1931 |
| BstFNI | CGCG | 2 cut(s) | 751, 1907 |
| BstHHI | GCGC | 2 cut(s) | 1577, 1707 |
| BstKTI | GATC | 3 cut(s) | 21, 816, 964 |
| BstMAI | GTCTC | 1 cut(s) | 359 |
| BstMBI | GATC | 3 cut(s) | 18, 813, 961 |
| BstMWI | GCNNNNNNNGC | 9 cut(s) | 50, 282, 610, 1086, 1239, 1245, 1350, 1611, 1702 |
| BstNSI | RCATGY | 3 cut(s) | 664, 1180, 1237 |
| BstPI | GGTNACC | 1 cut(s) | 446 |
| BstSFI | CTRYAG | 2 cut(s) | 518, 2023 |
| BstSNI | TACGTA | 1 cut(s) | 1002 |
| BstUI | CGCG | 2 cut(s) | 751, 1907 |
| BstV1I | GCAGC | 4 cut(s) | 402, 504, 957, 1251 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1858 |
| BstZ17I | GTATAC | 2 cut(s) | 534, 1005 |
| Bsu15I | ATCGAT | 1 cut(s) | 816 |
| BsuI | GTATCC | 1 cut(s) | 429 |
| BsuTUI | ATCGAT | 1 cut(s) | 816 |
| BtgZI | GCGATG | 2 cut(s) | 962, 1067 |
| BtsCI | GGATG | 6 cut(s) | 1072, 1091, 1156, 1260, 1264, 1931 |
| BtsIMutI | CAGTG | 3 cut(s) | 434, 1242, 1647 |
| Cac8I | GCNNGC | 4 cut(s) | 46, 945, 1050, 1091 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1296 |
| CfoI | GCGC | 2 cut(s) | 1577, 1707 |
| Cfr13I | GGNCC | 2 cut(s) | 37, 865 |
| ClaI | ATCGAT | 1 cut(s) | 816 |
| CseI | GACGC | 1 cut(s) | 757 |
| Csp6I | GTAC | 5 cut(s) | 473, 699, 915, 1404, 1799 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1018, 1053 |
| CviAII | CATG | 9 cut(s) | 542, 661, 671, 1177, 1234, 1397, 1697, 1802, 1855 |
| CviQI | GTAC | 5 cut(s) | 473, 699, 915, 1404, 1799 |
| DdeI | CTNAG | 5 cut(s) | 1392, 1598, 1684, 1760, 1875 |
| DpnI | GATC | 3 cut(s) | 20, 815, 963 |
| DpnII | GATC | 3 cut(s) | 18, 813, 961 |
| DraI | TTTAAA | 1 cut(s) | 1719 |
| DriI | GACNNNNNGTC | 1 cut(s) | 1180 |
| Eam1104I | CTCTTC | 4 cut(s) | 112, 201, 571, 630 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 1180 |
| EarI | CTCTTC | 4 cut(s) | 112, 201, 571, 630 |
| Ecl136II | GAGCTC | 1 cut(s) | 398 |
| Eco105I | TACGTA | 1 cut(s) | 1002 |
| Eco24I | GRGCYC | 2 cut(s) | 400, 1656 |
| Eco31I | GGTCTC | 1 cut(s) | 359 |
| Eco47I | GGWCC | 2 cut(s) | 37, 865 |
| Eco53kI | GAGCTC | 1 cut(s) | 398 |
| Eco57I | CTGAAG | 1 cut(s) | 1959 |
| Eco88I | CYCGRG | 1 cut(s) | 1500 |
| Eco91I | GGTNACC | 1 cut(s) | 446 |
| EcoICRI | GAGCTC | 1 cut(s) | 398 |
| EcoO65I | GGTNACC | 1 cut(s) | 446 |
| EcoRI | GAATTC | 1 cut(s) | 584 |
| EcoT38I | GRGCYC | 2 cut(s) | 400, 1656 |
| FaeI | CATG | 9 cut(s) | 545, 664, 674, 1180, 1237, 1400, 1700, 1805, 1858 |
| FatI | CATG | 9 cut(s) | 541, 660, 670, 1176, 1233, 1396, 1696, 1801, 1854 |
| FauI | CCCGC | 1 cut(s) | 125 |
| FblI | GTMKAC | 2 cut(s) | 533, 1004 |
| Fnu4HI | GCNGC | 5 cut(s) | 171, 391, 518, 971, 1240 |
| FokI | GGATG | 6 cut(s) | 1079, 1098, 1163, 1267, 1271, 1938 |
| FriOI | GRGCYC | 2 cut(s) | 400, 1656 |
| Fsp4HI | GCNGC | 5 cut(s) | 171, 391, 518, 971, 1240 |
| FspBI | CTAG | 4 cut(s) | 333, 653, 767, 1305 |
| FspI | TGCGCA | 1 cut(s) | 1706 |
| GlaI | GCGC | 2 cut(s) | 1576, 1706 |
| GluI | GCNGC | 5 cut(s) | 171, 391, 518, 971, 1240 |
| GsuI | CTGGAG | 2 cut(s) | 309, 867 |
| HapII | CCGG | 2 cut(s) | 683, 1345 |
| HgaI | GACGC | 1 cut(s) | 757 |
| HhaI | GCGC | 2 cut(s) | 1577, 1707 |
| Hin1II | CATG | 9 cut(s) | 545, 664, 674, 1180, 1237, 1400, 1700, 1805, 1858 |
| Hin6I | GCGC | 2 cut(s) | 1575, 1705 |
| HinP1I | GCGC | 2 cut(s) | 1575, 1705 |
| HincII | GTYRAC | 1 cut(s) | 1931 |
| HindII | GTYRAC | 1 cut(s) | 1931 |
| HindIII | AAGCTT | 1 cut(s) | 1058 |
| HinfI | GANTC | 3 cut(s) | 563, 773, 1814 |
| HpaII | CCGG | 2 cut(s) | 683, 1345 |
| HphI | GGTGA | 5 cut(s) | 173, 313, 349, 686, 848 |
| Hpy166II | GTNNAC | 6 cut(s) | 473, 534, 699, 1005, 1288, 1931 |
| Hpy188I | TCNGA | 2 cut(s) | 375, 1189 |
| Hpy8I | GTNNAC | 6 cut(s) | 473, 534, 699, 1005, 1288, 1931 |
| Hpy99I | CGWCG | 3 cut(s) | 97, 100, 751 |
| HpyCH4III | ACNGT | 2 cut(s) | 446, 1642 |
| HpyCH4IV | ACGT | 2 cut(s) | 1001, 1678 |
| HpyF10VI | GCNNNNNNNGC | 9 cut(s) | 50, 282, 610, 1086, 1239, 1245, 1350, 1611, 1702 |
| HpyF3I | CTNAG | 5 cut(s) | 1392, 1598, 1684, 1760, 1875 |
| HpySE526I | ACGT | 2 cut(s) | 1001, 1678 |
| Hsp92II | CATG | 9 cut(s) | 545, 664, 674, 1180, 1237, 1400, 1700, 1805, 1858 |
| HspAI | GCGC | 2 cut(s) | 1575, 1705 |
| Kzo9I | GATC | 3 cut(s) | 18, 813, 961 |
| LmnI | GCTCC | 2 cut(s) | 329, 1077 |
| Lsp1109I | GCAGC | 4 cut(s) | 402, 504, 957, 1251 |
| LweI | GCATC | 4 cut(s) | 1076, 1249, 1377, 1692 |
| MaeI | CTAG | 4 cut(s) | 333, 653, 767, 1305 |
| MaeII | ACGT | 2 cut(s) | 1001, 1678 |
| MaeIII | GTNAC | 9 cut(s) | 111, 140, 179, 446, 892, 1102, 1312, 1421, 1522 |
| MalI | GATC | 3 cut(s) | 20, 815, 963 |
| MboI | GATC | 3 cut(s) | 18, 813, 961 |
| MfeI | CAATTG | 2 cut(s) | 1368, 1893 |
| MhlI | GDGCHC | 2 cut(s) | 400, 1656 |
| MlyI | GAGTC | 1 cut(s) | 557 |
| MmeI | TCCRAC | 2 cut(s) | 113, 1128 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1284 |
| MseI | TTAA | 8 cut(s) | 645, 707, 1332, 1590, 1718, 1791, 1845, 1985 |
| MslI | CAYNNNNRTG | 1 cut(s) | 28 |
| MspA1I | CMGCKG | 1 cut(s) | 970 |
| MspI | CCGG | 2 cut(s) | 683, 1345 |
| MunI | CAATTG | 2 cut(s) | 1368, 1893 |
| Mva1269I | GAATGC | 1 cut(s) | 423 |
| MvnI | CGCG | 2 cut(s) | 751, 1907 |
| MwoI | GCNNNNNNNGC | 9 cut(s) | 50, 282, 610, 1086, 1239, 1245, 1350, 1611, 1702 |
| NdeII | GATC | 3 cut(s) | 18, 813, 961 |
| NlaIII | CATG | 9 cut(s) | 545, 664, 674, 1180, 1237, 1400, 1700, 1805, 1858 |
| NmuCI | GTSAC | 3 cut(s) | 179, 1102, 1522 |
| NsbI | TGCGCA | 1 cut(s) | 1706 |
| NspI | RCATGY | 3 cut(s) | 664, 1180, 1237 |
| PctI | GAATGC | 1 cut(s) | 423 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1284 |
| PfeI | GAWTC | 2 cut(s) | 773, 1814 |
| PkrI | GCNGC | 5 cut(s) | 172, 392, 519, 972, 1241 |
| PleI | GAGTC | 1 cut(s) | 557 |
| PpsI | GAGTC | 1 cut(s) | 557 |
| Ppu21I | YACGTR | 1 cut(s) | 1002 |
| PsiI | TTATAA | 2 cut(s) | 797, 1110 |
| Psp124BI | GAGCTC | 1 cut(s) | 400 |
| PspEI | GGTNACC | 1 cut(s) | 446 |
| PspPI | GGNCC | 2 cut(s) | 37, 865 |
| PstI | CTGCAG | 1 cut(s) | 522 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1296 |
| PvuII | CAGCTG | 1 cut(s) | 970 |
| RsaI | GTAC | 5 cut(s) | 474, 700, 916, 1405, 1800 |
| RsaNI | GTAC | 5 cut(s) | 473, 699, 915, 1404, 1799 |
| RseI | CAYNNNNRTG | 1 cut(s) | 28 |
| SacI | GAGCTC | 1 cut(s) | 400 |
| SaqAI | TTAA | 8 cut(s) | 645, 707, 1332, 1590, 1718, 1791, 1845, 1985 |
| SatI | GCNGC | 5 cut(s) | 171, 391, 518, 971, 1240 |
| Sau3AI | GATC | 3 cut(s) | 18, 813, 961 |
| Sau96I | GGNCC | 2 cut(s) | 37, 865 |
| SchI | GAGTC | 1 cut(s) | 557 |
| SduI | GDGCHC | 2 cut(s) | 400, 1656 |
| SfaNI | GCATC | 4 cut(s) | 1076, 1249, 1377, 1692 |
| SfcI | CTRYAG | 2 cut(s) | 518, 2023 |
| SinI | GGWCC | 2 cut(s) | 37, 865 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 28 |
| SmlI | CTYRAG | 1 cut(s) | 1417 |
| SmoI | CTYRAG | 1 cut(s) | 1417 |
| SnaBI | TACGTA | 1 cut(s) | 1002 |
| SsiI | CCGC | 4 cut(s) | 118, 170, 191, 751 |
| SspI | AATATT | 2 cut(s) | 1219, 1324 |
| SspMI | CTAG | 4 cut(s) | 333, 653, 767, 1305 |
| SstI | GAGCTC | 1 cut(s) | 400 |
| TaaI | ACNGT | 2 cut(s) | 446, 1642 |
| TaiI | ACGT | 2 cut(s) | 1004, 1681 |
| TaqI | TCGA | 5 cut(s) | 485, 492, 588, 816, 964 |
| TaqII | GACCGA | 2 cut(s) | 54, 882 |
| TatI | WGTACW | 3 cut(s) | 472, 1403, 1798 |
| TauI | GCSGC | 1 cut(s) | 173 |
| TfiI | GAWTC | 2 cut(s) | 773, 1814 |
| Tru1I | TTAA | 8 cut(s) | 645, 707, 1332, 1590, 1718, 1791, 1845, 1985 |
| Tru9I | TTAA | 8 cut(s) | 645, 707, 1332, 1590, 1718, 1791, 1845, 1985 |
| TscAI | CASTG | 3 cut(s) | 434, 1249, 1647 |
| TseFI | GTSAC | 3 cut(s) | 179, 1102, 1522 |
| TseI | GCWGC | 4 cut(s) | 390, 517, 970, 1239 |
| Tsp45I | GTSAC | 3 cut(s) | 179, 1102, 1522 |
| TspDTI | ATGAA | 6 cut(s) | 773, 1070, 1167, 1797, 1992, 2028 |
| TspGWI | ACGGA | 2 cut(s) | 169, 1455 |
| TspRI | CASTG | 3 cut(s) | 434, 1249, 1647 |
| VpaK11BI | GGWCC | 2 cut(s) | 37, 865 |
| XapI | RAATTY | 3 cut(s) | 584, 1163, 1411 |
| XbaI | TCTAGA | 2 cut(s) | 652, 766 |
| XceI | RCATGY | 3 cut(s) | 664, 1180, 1237 |
| XmiI | GTMKAC | 2 cut(s) | 533, 1004 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1284 |
| XspI | CTAG | 4 cut(s) | 333, 653, 767, 1305 |