MD08G1206600.v1.1

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr08
OG0012995
Physical Location & Seq
Forward (+)
26815389 .. 26817230
1842 bp
Loading structure...
UTR
Exon/CDS
Intron
MD08G1206600.v1.1.491

Sequence Viewer

Length: 1842 bp
ATGGATTTGATGGTACCTGTGAAGCAAACCCTTGATGGGTTTTGCTCATTTCACAGAGTTGGTAGGGAAAGGACAAGAAAGACTGGTAGTTTTGGAGCTACTGTTTGTGGTAAGGTTGGTCCCACCAAACCCAGTTCTGGGAGGCTCTTTGTGGGCTGCAGAGCTCGGCTTCTTGTTCTCTCTGATAGCATTCAGTGTAGAATACAGGACGGTTACCAGAAACATAGGCGAAAGCGTGTACTTGCTGTGTCGAAAGTCGAAACGTTTAGTTCCAATGGTAGGCTGCAGAATGTTGAGTATACCCCACCTGGGGGTTTGAATGGAATGGACTCTTCCAATGGTTTCGAAGAATTTGAGAGTAACAATCATCTCCGCAGGTTGGTCAGAAATGGGGAATTAGAAGAGGGATTTAAGTTTCTAGAGAACATGCTTTATCGTGGTGATATGCCGGATATTATTGCGTGTACAAGTTTAATCCGGGGTTTTTGTAAGAGTGGAAAGACAAAGAAGGCGACTCGGATTATGAACATTCTAGAAGACTCCGGGGCTGTCCTTGATGTTATAACTTACAATGTCTTGATCAGTGGCTACTGCAAGGCTGGTGAGATTGATAATGCTTTGAGGGTTTTGGACCGGATGAGTGTTTCTCCAGATGTTGTTACGTATAATACAATTTTGCGTACTTTGTGTGATAGTGGGAAATTGAAGCAAGCAATGGAAGTTCTTGATCGACAGATGCAAAGGCAATGTTATCCAGATGTGATTACATATACCATACTGATCGAAGCAACTTGTAAGGAAAGTGGGGTTGAGCAGGCGATGAAGCTTTTGGATGAGATGAGGAGCAAAGGATGCAAGCCTGATGTGGTCACTTATAATGTTCTTATAAATGGAATTTGCAAGGAAGGACGGTTGGATGAAGCAATCAAATTCTTGAACGACATGCCATCATCTGATTGCCAACCAAATGTCATTACCCACAATATTATTTTGCGTAGCATGTGCAGCACCGGGAGGTGGATGGATGCTGAGAAACTATTAGCTGAAATGGTTCACAGAGGCTGTTCTCCCAGTGTAGTTACTTTCAATATTTTGATTAACTTCTTGTGCCGGAAGGGTTTATTGGGTAGAGCAATTGACATTTTGGAGAAGATGCCAAAGCACGGTTGTACACCAAATTCCTTGAGTTACAACCCACTGCTTCATGGCTTTTGCAAGGAAAAGAAGATGGATAGGGCAATTGAGTATTTGGATACAATGGTTTCTCGGGGCTGTTATCCCGACATTGTAACCTACAATACTTTGCTCACAGCTTTGTGCAAAGATGCAAAGGTTGATATCGCAGTTGAGATACTTAATCAACTAAGTAGCAAGGGTTGCTCTCCTGTTCTAATCACATACAATACAGTGATTGATGGGCTCTCAAAGGTGGGGAAAACAGAACGTGCCTTAGAACTTTTGCATGAGATGCGCAAAAAGGGTTTAAAGCCCGATGTAATAACTTATTCTTCTCTTGTGGGAGGGCTTAGCAGAGAAGGAAAGGTTGATGAGGCAATTAAGTTTGTCCATGATTTGGAAGATGCGGGCGTCAAGCCGAATGCTATCACTTTTAACTCCATCATGTTGGGGCTTTGCAAGGCTAAGCAAACTTGTCGTGCAATTGATTTCCTCGCTTATATGGTATCTAGAGGATGCAAACCTACTGAAGCAACATACACAATTCTCATTGAAGGCATAGCTTATGAAGGGTTAGCAAAAGAGGCTCTGGAGTTATTGAATGAATTGTGCTATAAAGGGGTTGTGAAGAAAAGCTCTGCTGAACAGGTGGCAGTCAAGATGTAG

Protein Analysis

614

Amino Acids

68.11

Weight (kDa)

8.73

Isoelectric Point (pI)

34.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 122 - 164 2.6e-06 PPR repeat family
PPR_long PF17177 132 - 246 3.8e-06 Pentacotripeptide-repeat region of PRORP
PPR_2 PF13041 150 - 199 7.9e-13 PPR repeat family
TPR_24 PF23276 163 - 276 1.4e-10 Fungal tetratrico peptide repeats
PPR_1 PF12854 182 - 214 6.7e-13 PPR repeat
PPR_2 PF13041 186 - 214 1.7e-07 PPR repeat family
PPR PF01535 188 - 213 7.9e-08 PPR repeat
PPR_1 PF12854 215 - 243 2.6e-09 PPR repeat
PPR_3 PF13812 215 - 264 1.4e-08 Pentatricopeptide repeat domain
PPR_2 PF13041 217 - 266 7.3e-15 PPR repeat family
TPR_24 PF23276 224 - 346 4.2e-09 Fungal tetratrico peptide repeats
PPR_1 PF12854 249 - 281 5.5e-10 PPR repeat
PPR_2 PF13041 252 - 301 8.9e-20 PPR repeat family
PPR_3 PF13812 252 - 299 5.1e-11 Pentatricopeptide repeat domain
PPR_3 PF13812 275 - 332 3.7e-11 Pentatricopeptide repeat domain
PPR_1 PF12854 283 - 315 1.3e-16 PPR repeat
PPR_2 PF13041 287 - 335 4.8e-19 PPR repeat family
PPR PF01535 290 - 320 6.3e-08 PPR repeat
PPR_3 PF13812 312 - 368 1.5e-09 Pentatricopeptide repeat domain
PPR_1 PF12854 319 - 351 1.6e-08 PPR repeat
PPR_2 PF13041 322 - 371 1.8e-15 PPR repeat family
PPR_long PF17177 345 - 455 1e-07 Pentacotripeptide-repeat region of PRORP
PPR_3 PF13812 345 - 403 5e-10 Pentatricopeptide repeat domain
PPR_1 PF12854 353 - 385 9.1e-12 PPR repeat
PPR_2 PF13041 357 - 406 1.2e-15 PPR repeat family
PPR PF01535 360 - 390 3.1e-06 PPR repeat
TPR_24 PF23276 367 - 488 5.5e-12 Fungal tetratrico peptide repeats
PPR_1 PF12854 389 - 421 1.2e-08 PPR repeat
PPR_2 PF13041 392 - 441 7.5e-17 PPR repeat family
PPR_3 PF13812 417 - 471 6.9e-11 Pentatricopeptide repeat domain
PPR_1 PF12854 423 - 454 8.4e-10 PPR repeat
PPR_2 PF13041 427 - 462 9.2e-09 PPR repeat family
TPR_24 PF23276 443 - 555 2.6e-08 Fungal tetratrico peptide repeats
PPR_1 PF12854 458 - 491 1.1e-09 PPR repeat
PPR_2 PF13041 464 - 510 2e-16 PPR repeat family
PPR_3 PF13812 465 - 507 1.5e-08 Pentatricopeptide repeat domain
PPR PF01535 465 - 495 6.7e-09 PPR repeat
PPR_long PF17177 481 - 597 2.5e-10 Pentacotripeptide-repeat region of PRORP
PPR_1 PF12854 493 - 524 4.4e-10 PPR repeat
PPR_2 PF13041 505 - 546 3.6e-09 PPR repeat family
PPR_3 PF13812 522 - 577 8.8e-07 Pentatricopeptide repeat domain
PPR_2 PF13041 532 - 579 1.4e-13 PPR repeat family
PPR_1 PF12854 563 - 594 5.6e-06 PPR repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0012995)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G09900
fragaria_vesca FvH4_5g34030
malus_domestica MD08G1206600.v1.1 MD15G1390100.v1.1
prunus_persica Prupe.1G539000_v2.0.a1 Prupe.1G539000_v2.0.a1
pyrus_communis pycom08g17840 pycom15g34930
rosa_chinensis RchiOBHm_Chr7g0233521
rosa_laevigata RLG00000001253
rosa_multiflora Rmu_sc0000029.1_g000012
rosa_roxburghii Rroxscaffold_3G00227230
rosa_rugosa Rorug07G0281100.1
rosa_samantha Rh7AG437500 Rh7BG410000 Rh7CG457100 Rh7DG426500
rosa_wichuraiana Rw7G036080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 3 cut(s) 563, 876, 887
Acc16I TGCGCA 1 cut(s) 1472
Acc36I ACCTGC 1 cut(s) 366
Acc65I GGTACC 1 cut(s) 13
AccB1I GGYRCC 1 cut(s) 13
AccB7I CCANNNNNTGG 1 cut(s) 1573
AccI GTMKAC 1 cut(s) 299
AciI CCGC 2 cut(s) 373, 1583
AclI AACGTT 1 cut(s) 263
AcsI RAATTY 4 cut(s) 350, 894, 929, 1177
AcuI CTGAAG 1 cut(s) 1725
AcyI GRCGYC 1 cut(s) 1587
AfaI GTAC 5 cut(s) 15, 240, 466, 682, 1171
AgsI TTSAA 6 cut(s) 319, 706, 937, 1087, 1730, 1777
AjnI CCWGG 1 cut(s) 307
AjuI GAANNNNNNNTTGG 2 cut(s) 1106, 1138
AluBI AGCT 7 cut(s) 98, 164, 826, 1043, 1313, 1739, 1812
AluI AGCT 7 cut(s) 98, 164, 826, 1043, 1313, 1739, 1812
Alw21I GWGCWC 1 cut(s) 166
AlwNI CAGNNNCTG 1 cut(s) 1062
Ama87I CYCGRG 1 cut(s) 1266
ApeKI GCWGC 3 cut(s) 156, 283, 1005
ApoI RAATTY 4 cut(s) 350, 894, 929, 1177
Asp700I GAANNNNTTC 1 cut(s) 1050
Asp718I GGTACC 1 cut(s) 13
AspLEI GCGC 1 cut(s) 1473
AspS9I GGNCC 2 cut(s) 119, 631
AsuC2I CCSGG 3 cut(s) 479, 544, 1012
AsuHPI GGTGA 2 cut(s) 452, 614
AsuII TTCGAA 1 cut(s) 345
AvaI CYCGRG 1 cut(s) 1266
AvaII GGWCC 2 cut(s) 119, 631
BaeI ACNNNNGTAYC 2 cut(s) 1245, 1278
BanI GGYRCC 1 cut(s) 13
BanII GRGCYC 2 cut(s) 166, 1422
BbsI GAAGAC 1 cut(s) 543
Bbv12I GWGCWC 1 cut(s) 166
BbvI GCAGC 3 cut(s) 143, 270, 1017
BccI CCATC 7 cut(s) 4, 29, 955, 1015, 1222, 1409, 1625
BcgI CGANNNNNNTGC 2 cut(s) 1634, 1668
BciT130I CCWGG 1 cut(s) 309
BciVI GTATCC 1 cut(s) 1246
BclI TGATCA 1 cut(s) 579
BcnI CCSGG 3 cut(s) 479, 544, 1012
BfaI CTAG 3 cut(s) 419, 533, 1686
BfmI CTRYAG 2 cut(s) 157, 284
BfuAI ACCTGC 1 cut(s) 366
BfuI GTATCC 1 cut(s) 1246
BisI GCNGC 3 cut(s) 157, 284, 1006
BlpI GCTNAGC 2 cut(s) 1526, 1641
BlsI GCNGC 3 cut(s) 158, 285, 1007
Bme1390I CCNGG 4 cut(s) 309, 479, 544, 1012
Bme18I GGWCC 2 cut(s) 119, 631
BmeT110I CYCGRG 1 cut(s) 1266
BmgT120I GGNCC 2 cut(s) 119, 631
BmiI GGNNCC 2 cut(s) 15, 121
BmrFI CCNGG 4 cut(s) 309, 479, 544, 1012
BmrI ACTGGG 2 cut(s) 126, 1065
BmsI GCATC 8 cut(s) 726, 842, 1015, 1143, 1315, 1458, 1570, 1682
BmuI ACTGGG 2 cut(s) 126, 1065
BpiI GAAGAC 1 cut(s) 543
BplI GAGNNNNNCTC 2 cut(s) 631, 663
BpmI CTGGAG 2 cut(s) 633, 1787
Bpu1102I GCTNAGC 2 cut(s) 1526, 1641
Bpu14I TTCGAA 1 cut(s) 345
BpuEI CTTGAG 1 cut(s) 1204
BpuMI CCSGG 3 cut(s) 479, 544, 1012
BsaAI YACGTR 1 cut(s) 663
BsaHI GRCGYC 1 cut(s) 1587
BsaJI CCNNGG 3 cut(s) 308, 478, 543
BsaWI WCCGGW 1 cut(s) 633
BsaXI ACNNNNNCTCC 2 cut(s) 87, 117
Bse1I ACTGG 3 cut(s) 88, 132, 1071
Bse3DI GCAATG 2 cut(s) 720, 752
BseBI CCWGG 1 cut(s) 309
BseDI CCNNGG 3 cut(s) 308, 478, 543
BseGI GGATG 7 cut(s) 642, 838, 857, 922, 1026, 1030, 1697
BseMI GCAATG 2 cut(s) 720, 752
BseMII CTCAG 1 cut(s) 1020
BseNI ACTGG 3 cut(s) 88, 132, 1071
BseRI GAGGAG 1 cut(s) 856
BseXI GCAGC 3 cut(s) 143, 270, 1017
BsgI GTGCAG 1 cut(s) 1024
BshNI GGYRCC 1 cut(s) 13
BsiHKAI GWGCWC 1 cut(s) 166
BsiHKCI CYCGRG 1 cut(s) 1266
BsiSI CCGG 6 cut(s) 449, 478, 543, 634, 1011, 1111
BslFI GGGAC 1 cut(s) 105
BsmFI GGGAC 1 cut(s) 105
BsmI GAATGC 2 cut(s) 189, 1603
BsoBI CYCGRG 1 cut(s) 1266
Bsp119I TTCGAA 1 cut(s) 345
Bsp1286I GDGCHC 2 cut(s) 166, 1422
Bsp1407I TGTACA 2 cut(s) 464, 1169
Bsp143I GATC 3 cut(s) 579, 727, 780
Bsp1720I GCTNAGC 2 cut(s) 1526, 1641
BspACI CCGC 2 cut(s) 373, 1583
BspCNI CTCAG 1 cut(s) 1021
BspLI GGNNCC 2 cut(s) 15, 121
BspMAI CTGCAG 2 cut(s) 161, 288
BspMI ACCTGC 1 cut(s) 366
BspT104I TTCGAA 1 cut(s) 345
BspT107I GGYRCC 1 cut(s) 13
BsrDI GCAATG 2 cut(s) 720, 752
BsrGI TGTACA 2 cut(s) 464, 1169
BsrI ACTGG 3 cut(s) 88, 132, 1071
BssECI CCNNGG 3 cut(s) 308, 478, 543
BssMI GATC 3 cut(s) 579, 727, 780
BssNAI GTATAC 1 cut(s) 300
BssNI GRCGYC 1 cut(s) 1587
Bst1107I GTATAC 1 cut(s) 300
Bst2UI CCWGG 1 cut(s) 309
Bst4CI ACNGT 5 cut(s) 103, 212, 912, 1166, 1408
Bst6I CTCTTC 2 cut(s) 337, 396
BstACI GRCGYC 1 cut(s) 1587
BstAPI GCANNNNNTGC 3 cut(s) 852, 1377, 1468
BstAUI TGTACA 2 cut(s) 464, 1169
BstBAI YACGTR 1 cut(s) 663
BstBI TTCGAA 1 cut(s) 345
BstC8I GCNNGC 4 cut(s) 711, 816, 857, 1585
BstDEI CTNAG 5 cut(s) 1029, 1364, 1450, 1526, 1641
BstEII GGTNACC 1 cut(s) 212
BstF5I GGATG 7 cut(s) 642, 838, 857, 922, 1026, 1030, 1697
BstHHI GCGC 1 cut(s) 1473
BstKTI GATC 3 cut(s) 582, 730, 783
BstMBI GATC 3 cut(s) 579, 727, 780
BstMWI GCNNNNNNNGC 5 cut(s) 852, 1005, 1377, 1468, 1760
BstNI CCWGG 1 cut(s) 309
BstNSI RCATGY 3 cut(s) 430, 946, 1003
BstPI GGTNACC 1 cut(s) 212
BstSCI CCNGG 4 cut(s) 307, 477, 542, 1010
BstSFI CTRYAG 2 cut(s) 157, 284
BstSNI TACGTA 1 cut(s) 663
BstV1I GCAGC 3 cut(s) 143, 270, 1017
BstV2I GAAGAC 1 cut(s) 543
BstXI CCANNNNNNTGG 1 cut(s) 1624
BstZ17I GTATAC 1 cut(s) 300
BsuI GTATCC 1 cut(s) 1246
BtgZI GCGATG 1 cut(s) 833
BtsCI GGATG 7 cut(s) 642, 838, 857, 922, 1026, 1030, 1697
BtsI GCAGTG 1 cut(s) 1196
BtsIMutI CAGTG 5 cut(s) 200, 589, 1078, 1196, 1413
BveI ACCTGC 1 cut(s) 366
Cac8I GCNNGC 4 cut(s) 711, 816, 857, 1585
CaiI CAGNNNCTG 1 cut(s) 1062
CfoI GCGC 1 cut(s) 1473
Cfr13I GGNCC 2 cut(s) 119, 631
CseI GACGC 1 cut(s) 1576
Csp6I GTAC 5 cut(s) 14, 239, 465, 681, 1170
CviAII CATG 7 cut(s) 427, 943, 1000, 1205, 1463, 1568, 1621
CviQI GTAC 5 cut(s) 14, 239, 465, 681, 1170
DdeI CTNAG 5 cut(s) 1029, 1364, 1450, 1526, 1641
DpnI GATC 3 cut(s) 581, 729, 782
DpnII GATC 3 cut(s) 579, 727, 780
DraI TTTAAA 1 cut(s) 1485
Eam1104I CTCTTC 2 cut(s) 337, 396
EarI CTCTTC 2 cut(s) 337, 396
Ecl136II GAGCTC 1 cut(s) 164
Eco105I TACGTA 1 cut(s) 663
Eco24I GRGCYC 2 cut(s) 166, 1422
Eco32I GATATC 1 cut(s) 1339
Eco47I GGWCC 2 cut(s) 119, 631
Eco53kI GAGCTC 1 cut(s) 164
Eco57I CTGAAG 1 cut(s) 1725
Eco88I CYCGRG 1 cut(s) 1266
Eco91I GGTNACC 1 cut(s) 212
EcoICRI GAGCTC 1 cut(s) 164
EcoO65I GGTNACC 1 cut(s) 212
EcoRII CCWGG 1 cut(s) 307
EcoRV GATATC 1 cut(s) 1339
EcoT38I GRGCYC 2 cut(s) 166, 1422
FaeI CATG 7 cut(s) 430, 946, 1003, 1208, 1466, 1571, 1624
FaqI GGGAC 1 cut(s) 105
FatI CATG 7 cut(s) 426, 942, 999, 1204, 1462, 1567, 1620
FauI CCCGC 1 cut(s) 1576
FbaI TGATCA 1 cut(s) 579
FblI GTMKAC 1 cut(s) 299
Fnu4HI GCNGC 3 cut(s) 157, 284, 1006
FokI GGATG 7 cut(s) 649, 845, 864, 929, 1033, 1037, 1704
FriOI GRGCYC 2 cut(s) 166, 1422
Fsp4HI GCNGC 3 cut(s) 157, 284, 1006
FspBI CTAG 3 cut(s) 419, 533, 1686
FspI TGCGCA 1 cut(s) 1472
GlaI GCGC 1 cut(s) 1472
GluI GCNGC 3 cut(s) 157, 284, 1006
GsuI CTGGAG 2 cut(s) 633, 1787
HapII CCGG 6 cut(s) 449, 478, 543, 634, 1011, 1111
HgaI GACGC 1 cut(s) 1576
HhaI GCGC 1 cut(s) 1473
Hin1I GRCGYC 1 cut(s) 1587
Hin1II CATG 7 cut(s) 430, 946, 1003, 1208, 1466, 1571, 1624
Hin6I GCGC 1 cut(s) 1471
HinP1I GCGC 1 cut(s) 1471
HindIII AAGCTT 1 cut(s) 824
HinfI GANTC 3 cut(s) 329, 514, 539
HpaII CCGG 6 cut(s) 449, 478, 543, 634, 1011, 1111
HphI GGTGA 2 cut(s) 452, 614
Hpy166II GTNNAC 5 cut(s) 239, 300, 465, 1054, 1172
Hpy188I TCNGA 4 cut(s) 184, 386, 519, 955
Hpy8I GTNNAC 5 cut(s) 239, 300, 465, 1054, 1172
HpyAV CCTTC 6 cut(s) 502, 899, 1108, 1529, 1724, 1739
HpyCH4III ACNGT 5 cut(s) 103, 212, 912, 1166, 1408
HpyCH4IV ACGT 3 cut(s) 263, 662, 1444
HpyF10VI GCNNNNNNNGC 5 cut(s) 852, 1005, 1377, 1468, 1760
HpyF3I CTNAG 5 cut(s) 1029, 1364, 1450, 1526, 1641
HpySE526I ACGT 3 cut(s) 263, 662, 1444
Hsp92I GRCGYC 1 cut(s) 1587
Hsp92II CATG 7 cut(s) 430, 946, 1003, 1208, 1466, 1571, 1624
HspAI GCGC 1 cut(s) 1471
KpnI GGTACC 1 cut(s) 17
Ksp22I TGATCA 1 cut(s) 579
Kzo9I GATC 3 cut(s) 579, 727, 780
LmnI GCTCC 2 cut(s) 95, 843
Lsp1109I GCAGC 3 cut(s) 143, 270, 1017
LweI GCATC 8 cut(s) 726, 842, 1015, 1143, 1315, 1458, 1570, 1682
MaeI CTAG 3 cut(s) 419, 533, 1686
MaeII ACGT 3 cut(s) 263, 662, 1444
MaeIII GTNAC 7 cut(s) 212, 359, 658, 868, 1078, 1187, 1288
MalI GATC 3 cut(s) 581, 729, 782
MboI GATC 3 cut(s) 579, 727, 780
MboII GAAGA 9 cut(s) 324, 359, 413, 548, 1162, 1237, 1500, 1589, 1816
MfeI CAATTG 3 cut(s) 1134, 1239, 1659
MhlI GDGCHC 2 cut(s) 166, 1422
MlyI GAGTC 3 cut(s) 323, 508, 533
MmeI TCCRAC 1 cut(s) 894
MroXI GAANNNNTTC 1 cut(s) 1050
MseI TTAA 7 cut(s) 411, 473, 1098, 1356, 1484, 1557, 1611
MspI CCGG 6 cut(s) 449, 478, 543, 634, 1011, 1111
MspR9I CCNGG 4 cut(s) 309, 479, 544, 1012
MunI CAATTG 3 cut(s) 1134, 1239, 1659
Mva1269I GAATGC 2 cut(s) 189, 1603
MvaI CCWGG 1 cut(s) 309
MwoI GCNNNNNNNGC 5 cut(s) 852, 1005, 1377, 1468, 1760
NciI CCSGG 3 cut(s) 479, 544, 1012
NdeII GATC 3 cut(s) 579, 727, 780
NlaIII CATG 7 cut(s) 430, 946, 1003, 1208, 1466, 1571, 1624
NlaIV GGNNCC 2 cut(s) 15, 121
NmeAIII GCCGAG 1 cut(s) 145
NmuCI GTSAC 1 cut(s) 868
NsbI TGCGCA 1 cut(s) 1472
NspI RCATGY 3 cut(s) 430, 946, 1003
NspV TTCGAA 1 cut(s) 345
PctI GAATGC 2 cut(s) 189, 1603
PdmI GAANNNNTTC 1 cut(s) 1050
PflMI CCANNNNNTGG 1 cut(s) 1573
PkrI GCNGC 3 cut(s) 158, 285, 1007
PleI GAGTC 3 cut(s) 323, 508, 533
PpsI GAGTC 3 cut(s) 323, 508, 533
Ppu21I YACGTR 1 cut(s) 663
PsiI TTATAA 3 cut(s) 563, 876, 887
Psp124BI GAGCTC 1 cut(s) 166
Psp1406I AACGTT 1 cut(s) 263
Psp6I CCWGG 1 cut(s) 307
PspEI GGTNACC 1 cut(s) 212
PspGI CCWGG 1 cut(s) 307
PspN4I GGNNCC 2 cut(s) 15, 121
PspPI GGNCC 2 cut(s) 119, 631
PstI CTGCAG 2 cut(s) 161, 288
PstNI CAGNNNCTG 1 cut(s) 1062
RsaI GTAC 5 cut(s) 15, 240, 466, 682, 1171
RsaNI GTAC 5 cut(s) 14, 239, 465, 681, 1170
SacI GAGCTC 1 cut(s) 166
SaqAI TTAA 7 cut(s) 411, 473, 1098, 1356, 1484, 1557, 1611
SatI GCNGC 3 cut(s) 157, 284, 1006
Sau3AI GATC 3 cut(s) 579, 727, 780
Sau96I GGNCC 2 cut(s) 119, 631
SchI GAGTC 3 cut(s) 323, 508, 533
ScrFI CCNGG 4 cut(s) 309, 479, 544, 1012
SduI GDGCHC 2 cut(s) 166, 1422
SfaNI GCATC 8 cut(s) 726, 842, 1015, 1143, 1315, 1458, 1570, 1682
SfcI CTRYAG 2 cut(s) 157, 284
SfuI TTCGAA 1 cut(s) 345
SinI GGWCC 2 cut(s) 119, 631
SmlI CTYRAG 1 cut(s) 1183
SmoI CTYRAG 1 cut(s) 1183
SnaBI TACGTA 1 cut(s) 663
SsiI CCGC 2 cut(s) 373, 1583
SspI AATATT 2 cut(s) 985, 1090
SspMI CTAG 3 cut(s) 419, 533, 1686
SstI GAGCTC 1 cut(s) 166
StyD4I CCNGG 4 cut(s) 307, 477, 542, 1010
TaaI ACNGT 5 cut(s) 103, 212, 912, 1166, 1408
TaiI ACGT 3 cut(s) 266, 665, 1447
TaqI TCGA 5 cut(s) 251, 258, 345, 730, 783
TatI WGTACW 3 cut(s) 238, 464, 1169
Tru1I TTAA 7 cut(s) 411, 473, 1098, 1356, 1484, 1557, 1611
Tru9I TTAA 7 cut(s) 411, 473, 1098, 1356, 1484, 1557, 1611
TscAI CASTG 5 cut(s) 200, 589, 1078, 1203, 1413
TseFI GTSAC 1 cut(s) 868
TseI GCWGC 3 cut(s) 156, 283, 1005
Tsp45I GTSAC 1 cut(s) 868
TspDTI ATGAA 6 cut(s) 539, 836, 933, 1193, 1758, 1794
TspRI CASTG 5 cut(s) 200, 589, 1078, 1203, 1413
Van91I CCANNNNNTGG 1 cut(s) 1573
VpaK11BI GGWCC 2 cut(s) 119, 631
XapI RAATTY 4 cut(s) 350, 894, 929, 1177
XbaI TCTAGA 3 cut(s) 418, 532, 1685
XceI RCATGY 3 cut(s) 430, 946, 1003
XmiI GTMKAC 1 cut(s) 299
XmnI GAANNNNTTC 1 cut(s) 1050
XspI CTAG 3 cut(s) 419, 533, 1686
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.