Pentatricopeptide repeat-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G09900 |
| fragaria_vesca | FvH4_5g34030 |
| malus_domestica | MD08G1206600.v1.1 MD15G1390100.v1.1 |
| prunus_persica | Prupe.1G539000_v2.0.a1 Prupe.1G539000_v2.0.a1 |
| pyrus_communis | pycom08g17840 pycom15g34930 |
| rosa_chinensis | RchiOBHm_Chr7g0233521 |
| rosa_laevigata | RLG00000001253 |
| rosa_multiflora | Rmu_sc0000029.1_g000012 |
| rosa_roxburghii | Rroxscaffold_3G00227230 |
| rosa_rugosa | Rorug07G0281100.1 |
| rosa_samantha | Rh7AG437500 Rh7BG410000 Rh7CG457100 Rh7DG426500 |
| rosa_wichuraiana | Rw7G036080 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 3 cut(s) | 563, 666, 876 |
| Acc16I | TGCGCA | 1 cut(s) | 1472 |
| Acc65I | GGTACC | 1 cut(s) | 13 |
| AccB1I | GGYRCC | 1 cut(s) | 13 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1573 |
| AccI | GTMKAC | 1 cut(s) | 376 |
| AccIII | TCCGGA | 2 cut(s) | 448, 754 |
| AclI | AACGTT | 1 cut(s) | 573 |
| AcsI | RAATTY | 2 cut(s) | 350, 1177 |
| AcuI | CTGAAG | 1 cut(s) | 1725 |
| AfaI | GTAC | 9 cut(s) | 15, 73, 88, 240, 590, 682, 1009, 1171, 1400 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 36, 279, 309, 379, 1163, 1573 |
| AjnI | CCWGG | 1 cut(s) | 1668 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1106, 1138 |
| AluBI | AGCT | 6 cut(s) | 370, 599, 826, 1043, 1456, 1739 |
| AluI | AGCT | 6 cut(s) | 370, 599, 826, 1043, 1456, 1739 |
| Alw26I | GTCTC | 1 cut(s) | 416 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1062 |
| Ama87I | CYCGRG | 1 cut(s) | 1266 |
| Aor13HI | TCCGGA | 2 cut(s) | 448, 754 |
| ApeKI | GCWGC | 2 cut(s) | 156, 1062 |
| ApoI | RAATTY | 2 cut(s) | 350, 1177 |
| Asp718I | GGTACC | 1 cut(s) | 13 |
| AspLEI | GCGC | 1 cut(s) | 1473 |
| AspS9I | GGNCC | 1 cut(s) | 119 |
| AsuC2I | CCSGG | 1 cut(s) | 544 |
| AsuHPI | GGTGA | 1 cut(s) | 614 |
| AsuII | TTCGAA | 1 cut(s) | 335 |
| AvaI | CYCGRG | 1 cut(s) | 1266 |
| AvaII | GGWCC | 1 cut(s) | 119 |
| BanI | GGYRCC | 1 cut(s) | 13 |
| BanII | GRGCYC | 1 cut(s) | 1422 |
| BbvI | GCAGC | 2 cut(s) | 143, 1049 |
| BccI | CCATC | 8 cut(s) | 29, 203, 709, 955, 1015, 1222, 1319, 1409 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1634, 1668 |
| BciT130I | CCWGG | 1 cut(s) | 1670 |
| BciVI | GTATCC | 1 cut(s) | 1344 |
| BcnI | CCSGG | 1 cut(s) | 544 |
| BcoDI | GTCTC | 1 cut(s) | 416 |
| BfaI | CTAG | 3 cut(s) | 279, 533, 1071 |
| BfmI | CTRYAG | 2 cut(s) | 157, 1789 |
| BfuI | GTATCC | 1 cut(s) | 1344 |
| BisI | GCNGC | 2 cut(s) | 157, 1063 |
| BlpI | GCTNAGC | 2 cut(s) | 1641, 1750 |
| BlsI | GCNGC | 2 cut(s) | 158, 1064 |
| BmcAI | AGTACT | 1 cut(s) | 1009 |
| Bme1390I | CCNGG | 2 cut(s) | 544, 1670 |
| Bme18I | GGWCC | 1 cut(s) | 119 |
| BmeT110I | CYCGRG | 1 cut(s) | 1266 |
| BmgT120I | GGNCC | 1 cut(s) | 119 |
| BmiI | GGNNCC | 2 cut(s) | 15, 121 |
| BmrFI | CCNGG | 2 cut(s) | 544, 1670 |
| BmrI | ACTGGG | 2 cut(s) | 126, 1020 |
| BmsI | GCATC | 4 cut(s) | 842, 1015, 1143, 1458 |
| BmuI | ACTGGG | 2 cut(s) | 126, 1020 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 631, 663 |
| BpmI | CTGGAG | 1 cut(s) | 633 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1158 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 1641, 1750 |
| Bpu14I | TTCGAA | 1 cut(s) | 335 |
| BpuEI | CTTGAG | 2 cut(s) | 440, 1204 |
| BpuMI | CCSGG | 1 cut(s) | 544 |
| Bsa29I | ATCGAT | 1 cut(s) | 1662 |
| BsaAI | YACGTR | 1 cut(s) | 1398 |
| BsaI | GGTCTC | 1 cut(s) | 416 |
| BsaJI | CCNNGG | 3 cut(s) | 426, 478, 543 |
| BsaWI | WCCGGW | 3 cut(s) | 448, 633, 754 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 36, 279, 309, 379, 1163, 1573 |
| Bse1I | ACTGG | 4 cut(s) | 132, 384, 1015, 1654 |
| Bse3DI | GCAATG | 1 cut(s) | 1196 |
| BseAI | TCCGGA | 2 cut(s) | 448, 754 |
| BseBI | CCWGG | 1 cut(s) | 1670 |
| BseCI | ATCGAT | 1 cut(s) | 1662 |
| BseDI | CCNNGG | 3 cut(s) | 426, 478, 543 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 36, 279, 309, 379, 1163, 1573 |
| BseMI | GCAATG | 1 cut(s) | 1196 |
| BseMII | CTCAG | 1 cut(s) | 1020 |
| BseNI | ACTGG | 4 cut(s) | 132, 384, 1015, 1654 |
| BseRI | GAGGAG | 1 cut(s) | 856 |
| BseXI | GCAGC | 2 cut(s) | 143, 1049 |
| BshNI | GGYRCC | 1 cut(s) | 13 |
| BshVI | ATCGAT | 1 cut(s) | 1662 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1266 |
| BsiSI | CCGG | 5 cut(s) | 449, 543, 634, 755, 1111 |
| BslFI | GGGAC | 1 cut(s) | 105 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 36, 279, 309, 379, 1163, 1573 |
| BsmAI | GTCTC | 1 cut(s) | 416 |
| BsmFI | GGGAC | 1 cut(s) | 105 |
| BsmI | GAATGC | 1 cut(s) | 189 |
| Bso31I | GGTCTC | 1 cut(s) | 416 |
| BsoBI | CYCGRG | 1 cut(s) | 1266 |
| Bsp119I | TTCGAA | 1 cut(s) | 335 |
| Bsp1286I | GDGCHC | 1 cut(s) | 1422 |
| Bsp13I | TCCGGA | 2 cut(s) | 448, 754 |
| Bsp143I | GATC | 1 cut(s) | 727 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 1641, 1750 |
| Bsp19I | CCATGG | 1 cut(s) | 426 |
| BspCNI | CTCAG | 1 cut(s) | 1021 |
| BspDI | ATCGAT | 1 cut(s) | 1662 |
| BspEI | TCCGGA | 2 cut(s) | 448, 754 |
| BspLI | GGNNCC | 2 cut(s) | 15, 121 |
| BspMAI | CTGCAG | 1 cut(s) | 161 |
| BspT104I | TTCGAA | 1 cut(s) | 335 |
| BspT107I | GGYRCC | 1 cut(s) | 13 |
| BspTNI | GGTCTC | 1 cut(s) | 416 |
| BsrDI | GCAATG | 1 cut(s) | 1196 |
| BsrI | ACTGG | 4 cut(s) | 132, 384, 1015, 1654 |
| BssECI | CCNNGG | 3 cut(s) | 426, 478, 543 |
| BssMI | GATC | 1 cut(s) | 727 |
| BssT1I | CCWWGG | 1 cut(s) | 426 |
| Bst2UI | CCWGG | 1 cut(s) | 1670 |
| Bst4CI | ACNGT | 4 cut(s) | 71, 1166, 1408, 1785 |
| Bst6I | CTCTTC | 2 cut(s) | 396, 531 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 852, 1377 |
| BstBAI | YACGTR | 1 cut(s) | 1398 |
| BstBI | TTCGAA | 1 cut(s) | 335 |
| BstC8I | GCNNGC | 3 cut(s) | 463, 816, 857 |
| BstDEI | CTNAG | 7 cut(s) | 266, 1029, 1158, 1364, 1526, 1641, 1750 |
| BstDSI | CCRYGG | 2 cut(s) | 426, 478 |
| BstEII | GGTNACC | 1 cut(s) | 212 |
| BstHHI | GCGC | 1 cut(s) | 1473 |
| BstKTI | GATC | 1 cut(s) | 730 |
| BstMAI | GTCTC | 1 cut(s) | 416 |
| BstMBI | GATC | 1 cut(s) | 727 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 852, 1377, 1760 |
| BstNI | CCWGG | 1 cut(s) | 1670 |
| BstNSI | RCATGY | 2 cut(s) | 465, 1003 |
| BstPI | GGTNACC | 1 cut(s) | 212 |
| BstSCI | CCNGG | 2 cut(s) | 542, 1668 |
| BstSFI | CTRYAG | 2 cut(s) | 157, 1789 |
| BstV1I | GCAGC | 2 cut(s) | 143, 1049 |
| Bsu15I | ATCGAT | 1 cut(s) | 1662 |
| BsuI | GTATCC | 1 cut(s) | 1344 |
| BsuTUI | ATCGAT | 1 cut(s) | 1662 |
| BtgI | CCRYGG | 2 cut(s) | 426, 478 |
| BtgZI | GCGATG | 1 cut(s) | 728 |
| Cac8I | GCNNGC | 3 cut(s) | 463, 816, 857 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1062 |
| CfoI | GCGC | 1 cut(s) | 1473 |
| Cfr13I | GGNCC | 1 cut(s) | 119 |
| ClaI | ATCGAT | 1 cut(s) | 1662 |
| CseI | GACGC | 1 cut(s) | 237 |
| Csp6I | GTAC | 9 cut(s) | 14, 72, 87, 239, 589, 681, 1008, 1170, 1399 |
| CviAII | CATG | 9 cut(s) | 206, 308, 427, 462, 1000, 1048, 1205, 1568, 1621 |
| CviQI | GTAC | 9 cut(s) | 14, 72, 87, 239, 589, 681, 1008, 1170, 1399 |
| DdeI | CTNAG | 7 cut(s) | 266, 1029, 1158, 1364, 1526, 1641, 1750 |
| DpnI | GATC | 1 cut(s) | 729 |
| DpnII | GATC | 1 cut(s) | 727 |
| DraI | TTTAAA | 1 cut(s) | 21 |
| Eam1104I | CTCTTC | 2 cut(s) | 396, 531 |
| EarI | CTCTTC | 2 cut(s) | 396, 531 |
| Eco130I | CCWWGG | 1 cut(s) | 426 |
| Eco24I | GRGCYC | 1 cut(s) | 1422 |
| Eco31I | GGTCTC | 1 cut(s) | 416 |
| Eco47I | GGWCC | 1 cut(s) | 119 |
| Eco57I | CTGAAG | 1 cut(s) | 1725 |
| Eco88I | CYCGRG | 1 cut(s) | 1266 |
| Eco91I | GGTNACC | 1 cut(s) | 212 |
| EcoO65I | GGTNACC | 1 cut(s) | 212 |
| EcoRII | CCWGG | 1 cut(s) | 1668 |
| EcoT14I | CCWWGG | 1 cut(s) | 426 |
| EcoT38I | GRGCYC | 1 cut(s) | 1422 |
| ErhI | CCWWGG | 1 cut(s) | 426 |
| FaeI | CATG | 9 cut(s) | 209, 311, 430, 465, 1003, 1051, 1208, 1571, 1624 |
| FaqI | GGGAC | 1 cut(s) | 105 |
| FatI | CATG | 9 cut(s) | 205, 307, 426, 461, 999, 1047, 1204, 1567, 1620 |
| FblI | GTMKAC | 1 cut(s) | 376 |
| Fnu4HI | GCNGC | 2 cut(s) | 157, 1063 |
| FokI | GGATG | 9 cut(s) | 649, 770, 845, 864, 929, 1033, 1037, 1475, 1704 |
| FriOI | GRGCYC | 1 cut(s) | 1422 |
| Fsp4HI | GCNGC | 2 cut(s) | 157, 1063 |
| FspBI | CTAG | 3 cut(s) | 279, 533, 1071 |
| FspI | TGCGCA | 1 cut(s) | 1472 |
| GlaI | GCGC | 1 cut(s) | 1472 |
| GluI | GCNGC | 2 cut(s) | 157, 1063 |
| GsuI | CTGGAG | 1 cut(s) | 633 |
| HapII | CCGG | 5 cut(s) | 449, 543, 634, 755, 1111 |
| HgaI | GACGC | 1 cut(s) | 237 |
| HhaI | GCGC | 1 cut(s) | 1473 |
| Hin1II | CATG | 9 cut(s) | 209, 311, 430, 465, 1003, 1051, 1208, 1571, 1624 |
| Hin6I | GCGC | 1 cut(s) | 1471 |
| HinP1I | GCGC | 1 cut(s) | 1471 |
| HindIII | AAGCTT | 1 cut(s) | 824 |
| HinfI | GANTC | 4 cut(s) | 329, 539, 930, 1580 |
| HpaII | CCGG | 5 cut(s) | 449, 543, 634, 755, 1111 |
| HphI | GGTGA | 1 cut(s) | 614 |
| Hpy166II | GTNNAC | 3 cut(s) | 377, 1054, 1697 |
| Hpy188I | TCNGA | 3 cut(s) | 184, 929, 955 |
| Hpy8I | GTNNAC | 3 cut(s) | 377, 1054, 1697 |
| Hpy99I | CGWCG | 1 cut(s) | 253 |
| HpyAV | CCTTC | 7 cut(s) | 247, 502, 899, 1108, 1529, 1724, 1739 |
| HpyCH4III | ACNGT | 4 cut(s) | 71, 1166, 1408, 1785 |
| HpyCH4IV | ACGT | 4 cut(s) | 573, 969, 1397, 1444 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 852, 1377, 1760 |
| HpyF3I | CTNAG | 7 cut(s) | 266, 1029, 1158, 1364, 1526, 1641, 1750 |
| HpySE526I | ACGT | 4 cut(s) | 573, 969, 1397, 1444 |
| Hsp92II | CATG | 9 cut(s) | 209, 311, 430, 465, 1003, 1051, 1208, 1571, 1624 |
| HspAI | GCGC | 1 cut(s) | 1471 |
| Kpn2I | TCCGGA | 2 cut(s) | 448, 754 |
| KpnI | GGTACC | 1 cut(s) | 17 |
| Kzo9I | GATC | 1 cut(s) | 727 |
| LmnI | GCTCC | 2 cut(s) | 375, 843 |
| Lsp1109I | GCAGC | 2 cut(s) | 143, 1049 |
| LweI | GCATC | 4 cut(s) | 842, 1015, 1143, 1458 |
| MaeI | CTAG | 3 cut(s) | 279, 533, 1071 |
| MaeII | ACGT | 4 cut(s) | 573, 969, 1397, 1444 |
| MaeIII | GTNAC | 7 cut(s) | 212, 359, 658, 868, 1078, 1187, 1288 |
| MalI | GATC | 1 cut(s) | 729 |
| MboI | GATC | 1 cut(s) | 727 |
| MboII | GAAGA | 8 cut(s) | 324, 413, 548, 1162, 1237, 1500, 1589, 1816 |
| MfeI | CAATTG | 2 cut(s) | 1134, 1239 |
| MhlI | GDGCHC | 1 cut(s) | 1422 |
| MlyI | GAGTC | 1 cut(s) | 548 |
| MmeI | TCCRAC | 2 cut(s) | 894, 1746 |
| MroI | TCCGGA | 2 cut(s) | 448, 754 |
| MseI | TTAA | 6 cut(s) | 20, 411, 473, 620, 1098, 1557 |
| MspI | CCGG | 5 cut(s) | 449, 543, 634, 755, 1111 |
| MspR9I | CCNGG | 2 cut(s) | 544, 1670 |
| MunI | CAATTG | 2 cut(s) | 1134, 1239 |
| Mva1269I | GAATGC | 1 cut(s) | 189 |
| MvaI | CCWGG | 1 cut(s) | 1670 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 852, 1377, 1760 |
| NciI | CCSGG | 1 cut(s) | 544 |
| NcoI | CCATGG | 1 cut(s) | 426 |
| NdeII | GATC | 1 cut(s) | 727 |
| NlaIII | CATG | 9 cut(s) | 209, 311, 430, 465, 1003, 1051, 1208, 1571, 1624 |
| NlaIV | GGNNCC | 2 cut(s) | 15, 121 |
| NmuCI | GTSAC | 2 cut(s) | 658, 1288 |
| NsbI | TGCGCA | 1 cut(s) | 1472 |
| NspI | RCATGY | 2 cut(s) | 465, 1003 |
| NspV | TTCGAA | 1 cut(s) | 335 |
| PaeI | GCATGC | 1 cut(s) | 465 |
| PctI | GAATGC | 1 cut(s) | 189 |
| PfeI | GAWTC | 3 cut(s) | 329, 930, 1580 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1573 |
| PkrI | GCNGC | 2 cut(s) | 158, 1064 |
| PleI | GAGTC | 1 cut(s) | 547 |
| PpsI | GAGTC | 1 cut(s) | 547 |
| Ppu21I | YACGTR | 1 cut(s) | 1398 |
| PsiI | TTATAA | 3 cut(s) | 563, 666, 876 |
| Psp1406I | AACGTT | 1 cut(s) | 573 |
| Psp6I | CCWGG | 1 cut(s) | 1668 |
| PspEI | GGTNACC | 1 cut(s) | 212 |
| PspGI | CCWGG | 1 cut(s) | 1668 |
| PspN4I | GGNNCC | 2 cut(s) | 15, 121 |
| PspPI | GGNCC | 1 cut(s) | 119 |
| PstI | CTGCAG | 1 cut(s) | 161 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1062 |
| RsaI | GTAC | 9 cut(s) | 15, 73, 88, 240, 590, 682, 1009, 1171, 1400 |
| RsaNI | GTAC | 9 cut(s) | 14, 72, 87, 239, 589, 681, 1008, 1170, 1399 |
| SaqAI | TTAA | 6 cut(s) | 20, 411, 473, 620, 1098, 1557 |
| SatI | GCNGC | 2 cut(s) | 157, 1063 |
| Sau3AI | GATC | 1 cut(s) | 727 |
| Sau96I | GGNCC | 1 cut(s) | 119 |
| ScaI | AGTACT | 1 cut(s) | 1009 |
| SchI | GAGTC | 1 cut(s) | 548 |
| ScrFI | CCNGG | 2 cut(s) | 544, 1670 |
| SduI | GDGCHC | 1 cut(s) | 1422 |
| SfaNI | GCATC | 4 cut(s) | 842, 1015, 1143, 1458 |
| SfcI | CTRYAG | 2 cut(s) | 157, 1789 |
| SfuI | TTCGAA | 1 cut(s) | 335 |
| SinI | GGWCC | 1 cut(s) | 119 |
| SmlI | CTYRAG | 2 cut(s) | 419, 1183 |
| SmoI | CTYRAG | 2 cut(s) | 419, 1183 |
| SphI | GCATGC | 1 cut(s) | 465 |
| SspI | AATATT | 3 cut(s) | 457, 985, 1090 |
| SspMI | CTAG | 3 cut(s) | 279, 533, 1071 |
| StyD4I | CCNGG | 2 cut(s) | 542, 1668 |
| StyI | CCWWGG | 1 cut(s) | 426 |
| TaaI | ACNGT | 4 cut(s) | 71, 1166, 1408, 1785 |
| TaiI | ACGT | 4 cut(s) | 576, 972, 1400, 1447 |
| TaqI | TCGA | 4 cut(s) | 251, 335, 1129, 1662 |
| TatI | WGTACW | 4 cut(s) | 71, 238, 1007, 1169 |
| TfiI | GAWTC | 3 cut(s) | 329, 930, 1580 |
| Tru1I | TTAA | 6 cut(s) | 20, 411, 473, 620, 1098, 1557 |
| Tru9I | TTAA | 6 cut(s) | 20, 411, 473, 620, 1098, 1557 |
| TseFI | GTSAC | 2 cut(s) | 658, 1288 |
| TseI | GCWGC | 2 cut(s) | 156, 1062 |
| Tsp45I | GTSAC | 2 cut(s) | 658, 1288 |
| TspDTI | ATGAA | 9 cut(s) | 50, 539, 836, 849, 933, 954, 1193, 1563, 1758 |
| TspGWI | ACGGA | 4 cut(s) | 362, 467, 532, 1606 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1573 |
| VpaK11BI | GGWCC | 1 cut(s) | 119 |
| XapI | RAATTY | 2 cut(s) | 350, 1177 |
| XbaI | TCTAGA | 1 cut(s) | 532 |
| XceI | RCATGY | 2 cut(s) | 465, 1003 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1456 |
| XmiI | GTMKAC | 1 cut(s) | 376 |
| XspI | CTAG | 3 cut(s) | 279, 533, 1071 |
| ZrmI | AGTACT | 1 cut(s) | 1009 |