Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000029.1

Orthogroup ID

OG0012995

Physical Location & Seq

Genomic Coordinates Forward (+)

86452 .. 88269

Gene Structure 1818 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000029.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1818 bp

atggatttgatagtgcccacaaagcaaaacccatcagggttttgctcatttcacaaacttcatggtggttttggaggtaggattagtaataagttgagtcccacaccaagttcttcaagggtctttgtgggctgcaaagggcgggttcttgttgtatctgatagcattcggtgtagggcacaggatggttaccagaaacataggcgaaagcgaatagtggctgtgtccaaggtagaagcgcttagttccaacggtaggttgcaaaatgttgaaaagacccaacatgggaatttgaatggcatggattcttcaaatggttttgaggaatttgagagtaacaatcagctccgcagactggtgagaaatggggaattggaggaggggtttagatttcttgagagcatggtttaccgtggtgatattccggatatcattgcttgtacgagtttaatccgtgggttttgtaagcttggaaagacaaggaaggcgacgcggattatgtacatcctagaagagtccggtgctgtcccggatgtcataacttacaatgttttgattagcggctattgcagggcgggggaaattgataatgccttgagggtgttggacaggatgagtgtttccccagatgttgttacatataatacaattctgcgtacgttatgtgatagtgggaaattgaagcaagcaatggaagttcttgatcggcaattgcaaagggagtgttatcccgatgtgattacatatactatactgattgaagcaacttgcaaggaaagtggggttgagcaggcgatgaagcttttggatgagatgaagaacaaaggatgtaagcctgatgtagttacgtataatgttcttatcaatgggatttgcaaggaagggaggttggatgaagcaatcaaattcttgaatgacatgccaacctctgattgccagccaaatgttattactcataatatcatattgcgtagcatgtgtagcactgggaggtggatggatgctgaaagactattagctgaaatggttggcaaaggctgttctcctagtgttgttactttcaatattttgattaacttcttgtgccgaaagggtttgttgggtcgagcaattgacattttggagaagatgcctaaacatggttgtacacctaattccctgagttataatccattgcttcatggattttgcaaggagaaaaagatggacagggcaattgagtatttggatataatggtttctaggggctgttaccctgacattgtaacctacaatactttgctcacagctttatgcaaagatggaaaggttgatgttgcagttgagatacttaatcaattaagtagcaagggttgctctcctgttctaattacttacaataccgtgattgatgggctctcaaaggttgggaaaacagaacgtgccatagaattattggatgagatgcgtcaaaagggtctaaagccggatataataacttactcttcacttgtaggaggccttagtagagaaggaaaggttgatgaagcaattaagtttgtccgcgatttggaagggttgggtatcaggccaaatgctatcactttcaactgcatcatgctcgggctttgcaaggcaaggcaaacttctcgtgcaattgatttcctggctcatatggtatcgaaaggatgtaaacctactgaagcaacatacaccattcttattgaaggcatagcttatgaaggcctagcaaaagaggctttggagttgctcaatgaactgtgctatagaggggtggtgaagagaagttcagctgaacaggtggcagtcaagatgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016020 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

605

Amino Acids

67.2

Weight (kDa)

8.71

Isoelectric Point (pI)

37.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012995)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G09900
fragaria_vesca	FvH4_5g34030
malus_domestica	MD08G1206600.v1.1 MD15G1390100.v1.1
prunus_persica	Prupe.1G539000_v2.0.a1 Prupe.1G539000_v2.0.a1
pyrus_communis	pycom08g17840 pycom15g34930
rosa_chinensis	RchiOBHm_Chr7g0233521
rosa_laevigata	RLG00000001253
rosa_multiflora	Rmu_sc0000029.1_g000012
rosa_roxburghii	Rroxscaffold_3G00227230
rosa_rugosa	Rorug07G0281100.1
rosa_samantha	Rh7AG437500 Rh7BG410000 Rh7CG457100 Rh7DG426500
rosa_wichuraiana	Rw7G036080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1167
AccII	CGCG	2 cut(s)	493, 1545
AccIII	TCCGGA	1 cut(s)	424
AciI	CCGC	6 cut(s)	142, 349, 493, 561, 575, 1543
AcsI	RAATTY	3 cut(s)	289, 326, 905
AcuI	CTGAAG	1 cut(s)	1701
AfaI	GTAC	4 cut(s)	442, 503, 658, 1147
AfeI	AGCGCT	1 cut(s)	240
AfiI	CCNNNNNNNGG	5 cut(s)	255, 285, 355, 1139, 1549
AjnI	CCWGG	1 cut(s)	1644
AluBI	AGCT	7 cut(s)	346, 469, 802, 1019, 1289, 1715, 1793
AluI	AGCT	7 cut(s)	346, 469, 802, 1019, 1289, 1715, 1793
Ama87I	CYCGRG	1 cut(s)	1601
Aor13HI	TCCGGA	1 cut(s)	424
Aor51HI	AGCGCT	1 cut(s)	240
AoxI	GGCC	3 cut(s)	1498, 1568, 1723
ApeKI	GCWGC	1 cut(s)	132
ApoI	RAATTY	3 cut(s)	289, 326, 905
AspLEI	GCGC	1 cut(s)	241
AsuC2I	CCSGG	1 cut(s)	530
AsuHPI	GGTGA	3 cut(s)	370, 428, 1789
AvaI	CYCGRG	1 cut(s)	1601
BaeGI	GKGCMC	2 cut(s)	18, 181
BanII	GRGCYC	1 cut(s)	1398
BauI	CACGAG	1 cut(s)	1629
BbvI	GCAGC	1 cut(s)	119
BccI	CCATC	6 cut(s)	40, 179, 991, 1198, 1295, 1385
BcgI	CGANNNNNNTGC	4 cut(s)	1582, 1610, 1616, 1644
BciT130I	CCWGG	1 cut(s)	1646
BcnI	CCSGG	1 cut(s)	530
BfaI	CTAG	4 cut(s)	509, 1047, 1242, 1727
BfmI	CTRYAG	1 cut(s)	1765
BfoI	RGCGCY	1 cut(s)	242
BisI	GCNGC	2 cut(s)	133, 562
BlsI	GCNGC	2 cut(s)	134, 563
Bme1390I	CCNGG	2 cut(s)	530, 1646
BmeT110I	CYCGRG	1 cut(s)	1601
BmrFI	CCNGG	2 cut(s)	530, 1646
BmrI	ACTGGG	1 cut(s)	996
BmsI	GCATC	4 cut(s)	991, 1119, 1434, 1602
BmuI	ACTGGG	1 cut(s)	996
BpuEI	CTTGAG	2 cut(s)	416, 616
BpuMI	CCSGG	1 cut(s)	530
BsaAI	YACGTR	1 cut(s)	849
BsaJI	CCNNGG	3 cut(s)	228, 412, 454
BsaWI	WCCGGW	2 cut(s)	424, 518
BsaXI	ACNNNNNCTCC	2 cut(s)	368, 398
Bsc4I	CCNNNNNNNGG	5 cut(s)	255, 285, 355, 1139, 1549
Bse1I	ACTGG	2 cut(s)	360, 991
Bse3DI	GCAATG	3 cut(s)	432, 696, 1172
BseAI	TCCGGA	1 cut(s)	424
BseBI	CCWGG	1 cut(s)	1646
BseDI	CCNNGG	3 cut(s)	228, 412, 454
BseLI	CCNNNNNNNGG	5 cut(s)	255, 285, 355, 1139, 1549
BseMI	GCAATG	3 cut(s)	432, 696, 1172
BseMII	CTCAG	1 cut(s)	1151
BseNI	ACTGG	2 cut(s)	360, 991
BseRI	GAGGAG	1 cut(s)	392
BseSI	GKGCMC	2 cut(s)	18, 181
BseXI	GCAGC	1 cut(s)	119
Bsh1236I	CGCG	2 cut(s)	493, 1545
BshFI	GGCC	3 cut(s)	1500, 1570, 1725
BsiHKCI	CYCGRG	1 cut(s)	1601
BsiSI	CCGG	4 cut(s)	425, 519, 530, 1466
BsiWI	CGTACG	1 cut(s)	656
BslFI	GGGAC	2 cut(s)	84, 512
BslI	CCNNNNNNNGG	5 cut(s)	255, 285, 355, 1139, 1549
BsmFI	GGGAC	2 cut(s)	84, 512
BsmI	GAATGC	1 cut(s)	165
BsnI	GGCC	3 cut(s)	1500, 1570, 1725
BsoBI	CYCGRG	1 cut(s)	1601
Bsp1286I	GDGCHC	3 cut(s)	18, 181, 1398
Bsp13I	TCCGGA	1 cut(s)	424
Bsp1407I	TGTACA	2 cut(s)	501, 1145
Bsp143I	GATC	1 cut(s)	703
BspACI	CCGC	6 cut(s)	142, 349, 493, 561, 575, 1543
BspANI	GGCC	3 cut(s)	1500, 1570, 1725
BspCNI	CTCAG	1 cut(s)	1152
BspEI	TCCGGA	1 cut(s)	424
BspFNI	CGCG	2 cut(s)	493, 1545
BsrDI	GCAATG	3 cut(s)	432, 696, 1172
BsrGI	TGTACA	2 cut(s)	501, 1145
BsrI	ACTGG	2 cut(s)	360, 991
BssECI	CCNNGG	3 cut(s)	228, 412, 454
BssMI	GATC	1 cut(s)	703
BssSI	CACGAG	1 cut(s)	1629
BssT1I	CCWWGG	1 cut(s)	228
Bst2BI	CACGAG	1 cut(s)	1629
Bst2UI	CCWGG	1 cut(s)	1646
Bst4CI	ACNGT	4 cut(s)	254, 413, 1384, 1761
Bst6I	CTCTTC	3 cut(s)	507, 1489, 1775
BstAPI	GCANNNNNTGC	1 cut(s)	1353
BstAUI	TGTACA	2 cut(s)	501, 1145
BstBAI	YACGTR	1 cut(s)	849
BstC8I	GCNNGC	3 cut(s)	687, 792, 938
BstDEI	CTNAG	3 cut(s)	242, 1160, 1502
BstDSI	CCRYGG	2 cut(s)	412, 454
BstEII	GGTNACC	1 cut(s)	188
BstFNI	CGCG	2 cut(s)	493, 1545
BstH2I	RGCGCY	1 cut(s)	242
BstHHI	GCGC	1 cut(s)	241
BstKTI	GATC	1 cut(s)	706
BstMBI	GATC	1 cut(s)	703
BstMWI	GCNNNNNNNGC	5 cut(s)	22, 567, 981, 1353, 1736
BstNI	CCWGG	1 cut(s)	1646
BstNSI	RCATGY	2 cut(s)	922, 979
BstPI	GGTNACC	1 cut(s)	188
BstSCI	CCNGG	2 cut(s)	528, 1644
BstSFI	CTRYAG	1 cut(s)	1765
BstSLI	GKGCMC	2 cut(s)	18, 181
BstSNI	TACGTA	1 cut(s)	849
BstUI	CGCG	2 cut(s)	493, 1545
BstV1I	GCAGC	1 cut(s)	119
BsuRI	GGCC	3 cut(s)	1500, 1570, 1725
BtgI	CCRYGG	2 cut(s)	412, 454
BtgZI	GCGATG	1 cut(s)	809
BtsIMutI	CAGTG	1 cut(s)	984
Cac8I	GCNNGC	3 cut(s)	687, 792, 938
CfoI	GCGC	1 cut(s)	241
CseI	GACGC	2 cut(s)	499, 1436
Csp6I	GTAC	4 cut(s)	441, 502, 657, 1146
CspCI	CAANNNNNGTGG	2 cut(s)	760, 795
CviAII	CATG	9 cut(s)	62, 284, 301, 403, 919, 976, 1139, 1181, 1597
CviQI	GTAC	4 cut(s)	441, 502, 657, 1146
DdeI	CTNAG	3 cut(s)	242, 1160, 1502
DpnI	GATC	1 cut(s)	705
DpnII	GATC	1 cut(s)	703
Eam1104I	CTCTTC	3 cut(s)	507, 1489, 1775
EarI	CTCTTC	3 cut(s)	507, 1489, 1775
Eco105I	TACGTA	1 cut(s)	849
Eco130I	CCWWGG	1 cut(s)	228
Eco147I	AGGCCT	2 cut(s)	1500, 1725
Eco24I	GRGCYC	1 cut(s)	1398
Eco32I	GATATC	1 cut(s)	430
Eco47III	AGCGCT	1 cut(s)	240
Eco57I	CTGAAG	1 cut(s)	1701
Eco88I	CYCGRG	1 cut(s)	1601
Eco91I	GGTNACC	1 cut(s)	188
EcoO65I	GGTNACC	1 cut(s)	188
EcoRII	CCWGG	1 cut(s)	1644
EcoRV	GATATC	1 cut(s)	430
EcoT14I	CCWWGG	1 cut(s)	228
EcoT38I	GRGCYC	1 cut(s)	1398
ErhI	CCWWGG	1 cut(s)	228
FaeI	CATG	9 cut(s)	65, 287, 304, 406, 922, 979, 1142, 1184, 1600
FalI	AAGNNNNNCTT	2 cut(s)	1609, 1641
FaqI	GGGAC	2 cut(s)	84, 512
FatI	CATG	9 cut(s)	61, 283, 300, 402, 918, 975, 1138, 1180, 1596
FauI	CCCGC	2 cut(s)	135, 568
FauNDI	CATATG	1 cut(s)	1653
Fnu4HI	GCNGC	2 cut(s)	133, 562
FriOI	GRGCYC	1 cut(s)	1398
Fsp4HI	GCNGC	2 cut(s)	133, 562
FspBI	CTAG	4 cut(s)	509, 1047, 1242, 1727
GlaI	GCGC	1 cut(s)	240
GluI	GCNGC	2 cut(s)	133, 562
HaeII	RGCGCY	1 cut(s)	242
HaeIII	GGCC	3 cut(s)	1500, 1570, 1725
HapII	CCGG	4 cut(s)	425, 519, 530, 1466
HgaI	GACGC	2 cut(s)	499, 1436
HhaI	GCGC	1 cut(s)	241
Hin1II	CATG	9 cut(s)	65, 287, 304, 406, 922, 979, 1142, 1184, 1600
Hin6I	GCGC	1 cut(s)	239
HinP1I	GCGC	1 cut(s)	239
HindIII	AAGCTT	2 cut(s)	467, 800
HinfI	GANTC	3 cut(s)	97, 305, 515
HpaII	CCGG	4 cut(s)	425, 519, 530, 1466
HphI	GGTGA	3 cut(s)	370, 428, 1789
Hpy166II	GTNNAC	3 cut(s)	409, 1148, 1673
Hpy188I	TCNGA	2 cut(s)	160, 931
Hpy188III	TCNNGA	6 cut(s)	395, 425, 701, 731, 910, 1810
Hpy8I	GTNNAC	3 cut(s)	409, 1148, 1673
Hpy99I	CGWCG	1 cut(s)	493
HpyAV	CCTTC	6 cut(s)	478, 875, 1505, 1547, 1700, 1715
HpyCH4III	ACNGT	4 cut(s)	254, 413, 1384, 1761
HpyCH4IV	ACGT	3 cut(s)	659, 848, 1420
HpyF10VI	GCNNNNNNNGC	5 cut(s)	22, 567, 981, 1353, 1736
HpyF3I	CTNAG	3 cut(s)	242, 1160, 1502
HpySE526I	ACGT	3 cut(s)	659, 848, 1420
Hsp92II	CATG	9 cut(s)	65, 287, 304, 406, 922, 979, 1142, 1184, 1600
HspAI	GCGC	1 cut(s)	239
Kpn2I	TCCGGA	1 cut(s)	424
Kzo9I	GATC	1 cut(s)	703
LmnI	GCTCC	1 cut(s)	351
Lsp1109I	GCAGC	1 cut(s)	119
LweI	GCATC	4 cut(s)	991, 1119, 1434, 1602
MaeI	CTAG	4 cut(s)	509, 1047, 1242, 1727
MaeII	ACGT	3 cut(s)	659, 848, 1420
MaeIII	GTNAC	7 cut(s)	188, 335, 634, 844, 1054, 1250, 1264
MalI	GATC	1 cut(s)	705
MboI	GATC	1 cut(s)	703
MboII	GAAGA	7 cut(s)	105, 300, 524, 829, 1138, 1476, 1792
MfeI	CAATTG	4 cut(s)	710, 1110, 1215, 1635
MhlI	GDGCHC	3 cut(s)	18, 181, 1398
MlyI	GAGTC	2 cut(s)	106, 524
MmeI	TCCRAC	3 cut(s)	273, 585, 870
MroI	TCCGGA	1 cut(s)	424
MseI	TTAA	5 cut(s)	449, 1074, 1332, 1340, 1533
MspA1I	CMGCKG	1 cut(s)	1793
MspI	CCGG	4 cut(s)	425, 519, 530, 1466
MspR9I	CCNGG	2 cut(s)	530, 1646
MunI	CAATTG	4 cut(s)	710, 1110, 1215, 1635
Mva1269I	GAATGC	1 cut(s)	165
MvaI	CCWGG	1 cut(s)	1646
MvnI	CGCG	2 cut(s)	493, 1545
MwoI	GCNNNNNNNGC	5 cut(s)	22, 567, 981, 1353, 1736
NciI	CCSGG	1 cut(s)	530
NdeI	CATATG	1 cut(s)	1653
NdeII	GATC	1 cut(s)	703
NlaIII	CATG	9 cut(s)	65, 287, 304, 406, 922, 979, 1142, 1184, 1600
NspI	RCATGY	2 cut(s)	922, 979
PceI	AGGCCT	2 cut(s)	1500, 1725
PctI	GAATGC	1 cut(s)	165
PfeI	GAWTC	1 cut(s)	305
Pfl23II	CGTACG	1 cut(s)	656
PfoI	TCCNGGA	1 cut(s)	528
PkrI	GCNGC	2 cut(s)	134, 563
PleI	GAGTC	2 cut(s)	105, 523
PpsI	GAGTC	2 cut(s)	105, 523
Ppu21I	YACGTR	1 cut(s)	849
PsiI	TTATAA	1 cut(s)	1167
Psp6I	CCWGG	1 cut(s)	1644
PspEI	GGTNACC	1 cut(s)	188
PspGI	CCWGG	1 cut(s)	1644
PspLI	CGTACG	1 cut(s)	656
PvuII	CAGCTG	1 cut(s)	1793
RsaI	GTAC	4 cut(s)	442, 503, 658, 1147
RsaNI	GTAC	4 cut(s)	441, 502, 657, 1146
SaqAI	TTAA	5 cut(s)	449, 1074, 1332, 1340, 1533
SatI	GCNGC	2 cut(s)	133, 562
Sau3AI	GATC	1 cut(s)	703
SchI	GAGTC	2 cut(s)	106, 524
ScrFI	CCNGG	2 cut(s)	530, 1646
SduI	GDGCHC	3 cut(s)	18, 181, 1398
SfaNI	GCATC	4 cut(s)	991, 1119, 1434, 1602
SfcI	CTRYAG	1 cut(s)	1765
SmlI	CTYRAG	2 cut(s)	395, 595
SmoI	CTYRAG	2 cut(s)	395, 595
SnaBI	TACGTA	1 cut(s)	849
SseBI	AGGCCT	2 cut(s)	1500, 1725
SsiI	CCGC	6 cut(s)	142, 349, 493, 561, 575, 1543
SspI	AATATT	1 cut(s)	1066
SspMI	CTAG	4 cut(s)	509, 1047, 1242, 1727
StuI	AGGCCT	2 cut(s)	1500, 1725
StyD4I	CCNGG	2 cut(s)	528, 1644
StyI	CCWWGG	1 cut(s)	228
TaaI	ACNGT	4 cut(s)	254, 413, 1384, 1761
TaiI	ACGT	3 cut(s)	662, 851, 1423
TaqI	TCGA	2 cut(s)	1105, 1661
TatI	WGTACW	2 cut(s)	501, 1145
TauI	GCSGC	1 cut(s)	564
TfiI	GAWTC	1 cut(s)	305
Tru1I	TTAA	5 cut(s)	449, 1074, 1332, 1340, 1533
Tru9I	TTAA	5 cut(s)	449, 1074, 1332, 1340, 1533
TscAI	CASTG	1 cut(s)	991
TseI	GCWGC	1 cut(s)	132
TspDTI	ATGAA	8 cut(s)	50, 812, 830, 909, 1169, 1539, 1734, 1770
TspGWI	ACGGA	1 cut(s)	443
TspRI	CASTG	1 cut(s)	991
XapI	RAATTY	3 cut(s)	289, 326, 905
XceI	RCATGY	2 cut(s)	922, 979
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1432
XspI	CTAG	4 cut(s)	509, 1047, 1242, 1727

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.