Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0011154

Physical Location & Seq

Genomic Coordinates Forward (+)

3273753 .. 3275953

Gene Structure 2201 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G10030.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

ATGAAGGCGTTGGGGTATTGGTTAATGGTGGTTGGTTCACTGAGACTAGCTTCTGTTTGGTTTGGTTTCTTCAACATTTGGGCTCTTCGTCTCGCTGTCTTCTCTCAGACCACCATGAGTGAAGTTCATGGACGTACATTCGGAGTATGGACACTCTTGACCTGCACTCTCTGCTTTCTTTGTGCATTCAACCTCGAAAACAAACCATTATACTTGGCTACGTTTCTATCATTTATCTATGCGTTAGGCCATTTTCTGACTGAATACCTCTTTTACCAAACAATGACCATCGCGAATCTCTCAACTGTGGGCTTCTTTGCAGGTACATCGATTGTGTGGATGCTCTTGGAGTGGAATTCCCTTGAACAACCACACTCCAAACTTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006066 GO:0006629 GO:0006694 GO:0006696 GO:0008150 GO:0008152 GO:0008202 GO:0008204 GO:0008610 GO:0009058 GO:0009987 GO:0012505 GO:0016020 GO:0016125 GO:0016126 GO:0016128 GO:0016129 GO:0030674 GO:0031984 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044107 GO:0044108 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046165 GO:0060090 GO:0071704 GO:0097384 GO:0098827 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617 GO:1902652 GO:1902653

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Erg28

Protein Analysis

129

Amino Acids

14.8

Weight (kDa)

7.75

Isoelectric Point (pI)

30.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Erg28	PF03694	4 - 112	6.2e-29	Erg28 like protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0011154)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10030
fragaria_vesca	FvH4_2g03000 FvH4_2g03000 FvH4_2g03000
malus_domestica	MD05G1108500.v1.1 MD10G1112500.v1.1
prunus_persica	Prupe.8G152200_v2.0.a1
pyrus_communis	pycom05g10450
rosa_chinensis	RchiOBHm_Chr6g0247791
rosa_laevigata	RLG00000015179
rosa_multiflora	Rmu_sc0001983.1_g000011 Rmu_sc0009569.1_g000010
rosa_roxburghii	Rroxscaffold_180G00433240 Rroxscaffold_7G00213650
rosa_rugosa	Rorug05G0528900
rosa_samantha	Rh6AG043700 Rh6BG038500 Rh6CG037200 Rh6DG034300
rosa_wichuraiana	Rw6G003790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	170, 311
AccII	CGCG	1 cut(s)	293
AcsI	RAATTY	1 cut(s)	355
AfaI	GTAC	2 cut(s)	136, 325
AgsI	TTSAA	3 cut(s)	73, 190, 365
AluBI	AGCT	1 cut(s)	50
AluI	AGCT	1 cut(s)	50
Alw26I	GTCTC	2 cut(s)	37, 95
AoxI	GGCC	1 cut(s)	247
ApoI	RAATTY	1 cut(s)	355
BanII	GRGCYC	1 cut(s)	85
BbsI	GAAGAC	1 cut(s)	91
BccI	CCATC	1 cut(s)	296
BcgI	CGANNNNNNTGC	2 cut(s)	309, 343
BcoDI	GTCTC	2 cut(s)	37, 95
BfaI	CTAG	1 cut(s)	47
BfuAI	ACCTGC	2 cut(s)	170, 311
BmsI	GCATC	1 cut(s)	330
BpiI	GAAGAC	1 cut(s)	91
Bsa29I	ATCGAT	1 cut(s)	329
BseCI	ATCGAT	1 cut(s)	329
BseGI	GGATG	1 cut(s)	345
BseMII	CTCAG	2 cut(s)	32, 119
BsgI	GTGCAG	1 cut(s)	148
Bsh1236I	CGCG	1 cut(s)	293
BshFI	GGCC	1 cut(s)	249
BshVI	ATCGAT	1 cut(s)	329
BsmAI	GTCTC	2 cut(s)	37, 95
BsmBI	CGTCTC	1 cut(s)	95
BsmI	GAATGC	1 cut(s)	185
BsnI	GGCC	1 cut(s)	249
Bsp1286I	GDGCHC	1 cut(s)	85
Bsp68I	TCGCGA	1 cut(s)	293
BspANI	GGCC	1 cut(s)	249
BspCNI	CTCAG	2 cut(s)	33, 118
BspDI	ATCGAT	1 cut(s)	329
BspFNI	CGCG	1 cut(s)	293
BspMI	ACCTGC	2 cut(s)	170, 311
BspQI	GCTCTTC	1 cut(s)	90
Bst4CI	ACNGT	1 cut(s)	307
Bst6I	CTCTTC	1 cut(s)	90
BstAPI	GCANNNNNTGC	1 cut(s)	171
BstDEI	CTNAG	2 cut(s)	41, 105
BstF5I	GGATG	1 cut(s)	345
BstFNI	CGCG	1 cut(s)	293
BstMAI	GTCTC	2 cut(s)	37, 95
BstMWI	GCNNNNNNNGC	1 cut(s)	171
BstUI	CGCG	1 cut(s)	293
BstV2I	GAAGAC	1 cut(s)	91
Bsu15I	ATCGAT	1 cut(s)	329
BsuRI	GGCC	1 cut(s)	249
BsuTUI	ATCGAT	1 cut(s)	329
BtgZI	GCGATG	1 cut(s)	274
BtsCI	GGATG	1 cut(s)	345
BtsIMutI	CAGTG	1 cut(s)	38
BtuMI	TCGCGA	1 cut(s)	293
BveI	ACCTGC	2 cut(s)	170, 311
ClaI	ATCGAT	1 cut(s)	329
Csp6I	GTAC	2 cut(s)	135, 324
CviAII	CATG	2 cut(s)	115, 128
CviJI	RGCY	5 cut(s)	50, 83, 218, 249, 312
CviKI_1	RGCY	5 cut(s)	50, 83, 218, 249, 312
CviQI	GTAC	2 cut(s)	135, 324
DdeI	CTNAG	2 cut(s)	41, 105
Eam1104I	CTCTTC	1 cut(s)	90
EarI	CTCTTC	1 cut(s)	90
Eco24I	GRGCYC	1 cut(s)	85
EcoRI	GAATTC	1 cut(s)	355
EcoT38I	GRGCYC	1 cut(s)	85
Esp3I	CGTCTC	1 cut(s)	95
FaeI	CATG	2 cut(s)	118, 131
FaiI	YATR	5 cut(s)	116, 129, 148, 211, 240
FatI	CATG	2 cut(s)	114, 127
FokI	GGATG	1 cut(s)	352
FriOI	GRGCYC	1 cut(s)	85
FspBI	CTAG	1 cut(s)	47
HaeIII	GGCC	1 cut(s)	249
Hin1II	CATG	2 cut(s)	118, 131
HinfI	GANTC	1 cut(s)	295
Hpy166II	GTNNAC	1 cut(s)	38
Hpy188I	TCNGA	3 cut(s)	108, 143, 258
Hpy188III	TCNNGA	3 cut(s)	157, 292, 387
Hpy8I	GTNNAC	1 cut(s)	38
HpyCH4III	ACNGT	1 cut(s)	307
HpyCH4IV	ACGT	2 cut(s)	133, 221
HpyCH4V	TGCA	3 cut(s)	165, 185, 320
HpyF10VI	GCNNNNNNNGC	1 cut(s)	171
HpyF3I	CTNAG	2 cut(s)	41, 105
HpySE526I	ACGT	2 cut(s)	133, 221
Hsp92II	CATG	2 cut(s)	118, 131
LguI	GCTCTTC	1 cut(s)	90
LpnPI	CCDG	2 cut(s)	175, 306
LweI	GCATC	1 cut(s)	330
MaeI	CTAG	1 cut(s)	47
MaeII	ACGT	2 cut(s)	133, 221
MboII	GAAGA	3 cut(s)	61, 77, 91
MhlI	GDGCHC	1 cut(s)	85
MluCI	AATT	1 cut(s)	355
MnlI	CCTC	2 cut(s)	203, 278
MseI	TTAA	1 cut(s)	23
Mva1269I	GAATGC	1 cut(s)	185
MvnI	CGCG	1 cut(s)	293
MwoI	GCNNNNNNNGC	1 cut(s)	171
NlaIII	CATG	2 cut(s)	118, 131
NruI	TCGCGA	1 cut(s)	293
PciSI	GCTCTTC	1 cut(s)	90
PctI	GAATGC	1 cut(s)	185
PfeI	GAWTC	1 cut(s)	295
RruI	TCGCGA	1 cut(s)	293
RsaI	GTAC	2 cut(s)	136, 325
RsaNI	GTAC	2 cut(s)	135, 324
SapI	GCTCTTC	1 cut(s)	90
SaqAI	TTAA	1 cut(s)	23
SduI	GDGCHC	1 cut(s)	85
SetI	ASST	7 cut(s)	52, 136, 164, 195, 224, 270, 325
SfaNI	GCATC	1 cut(s)	330
Sse9I	AATT	1 cut(s)	355
SspMI	CTAG	1 cut(s)	47
TaaI	ACNGT	1 cut(s)	307
TaiI	ACGT	2 cut(s)	136, 224
TaqI	TCGA	2 cut(s)	195, 329
TasI	AATT	1 cut(s)	355
TfiI	GAWTC	1 cut(s)	295
Tru1I	TTAA	1 cut(s)	23
Tru9I	TTAA	1 cut(s)	23
TscAI	CASTG	1 cut(s)	45
TspDTI	ATGAA	2 cut(s)	17, 116
TspRI	CASTG	1 cut(s)	45
XapI	RAATTY	1 cut(s)	355
XspI	CTAG	1 cut(s)	47

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.