Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0011154

Physical Location & Seq

Genomic Coordinates Reverse (-)

3464085 .. 3466765

Gene Structure 2681 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG034300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

ATGAAGGCGTTGAGTTGGTGGCTAATGCTGGTGGGTTCACTTAGGCTTGTCTCTGTTTGGTTCGGCTTTTTCGACATATGGGCTCTCCGTCTTGCTGTCTTCTCCAAATCCCCAATGACTGAAGTTCATGGAAGGACATTTGGTGTCTGGACTCTCCTTACTTGCACGCTCTGCTATCTTTGTGCTTTTAACCTTGACAACAAGCCACTCTACCTAGCTACCTTTCTATCATTCATCTATGCGCTTGGTCATTTCTTGACTGAGTACCTAATCTACCACACCATGGCCATTGCAAATCTTTCAACTGTCGGCTTTTTTGCAGGTATTAATTTGCTCGACCTTAGTTTATGGTCATTATTACTGGCATCCTTCCAGTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006066 GO:0006629 GO:0006694 GO:0006696 GO:0008150 GO:0008152 GO:0008202 GO:0008204 GO:0008610 GO:0009058 GO:0009987 GO:0012505 GO:0016020 GO:0016125 GO:0016126 GO:0016128 GO:0016129 GO:0030674 GO:0031984 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044107 GO:0044108 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046165 GO:0060090 GO:0071704 GO:0097384 GO:0098827 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617 GO:1902652 GO:1902653

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Erg28

Protein Analysis

126

Amino Acids

14.44

Weight (kDa)

7.75

Isoelectric Point (pI)

24.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Erg28	PF03694	4 - 111	7.7e-30	Erg28 like protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0011154)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10030
fragaria_vesca	FvH4_2g03000 FvH4_2g03000 FvH4_2g03000
malus_domestica	MD05G1108500.v1.1 MD10G1112500.v1.1
prunus_persica	Prupe.8G152200_v2.0.a1
pyrus_communis	pycom05g10450
rosa_chinensis	RchiOBHm_Chr6g0247791
rosa_laevigata	RLG00000015179
rosa_multiflora	Rmu_sc0001983.1_g000011 Rmu_sc0009569.1_g000010
rosa_roxburghii	Rroxscaffold_180G00433240 Rroxscaffold_7G00213650
rosa_rugosa	Rorug05G0528900
rosa_samantha	Rh6AG043700 Rh6BG038500 Rh6CG037200 Rh6DG034300
rosa_wichuraiana	Rw6G003790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	311
AccB7I	CCANNNNNTGG	1 cut(s)	283
AcoI	YGGCCR	1 cut(s)	285
AcuI	CTGAAG	1 cut(s)	141
AfaI	GTAC	1 cut(s)	266
AfiI	CCNNNNNNNGG	1 cut(s)	283
AgsI	TTSAA	1 cut(s)	303
AluBI	AGCT	1 cut(s)	218
AluI	AGCT	1 cut(s)	218
Alw26I	GTCTC	1 cut(s)	55
AoxI	GGCC	1 cut(s)	285
AseI	ATTAAT	1 cut(s)	327
AspLEI	GCGC	1 cut(s)	244
BalI	TGGCCA	1 cut(s)	287
BanII	GRGCYC	1 cut(s)	85
BbsI	GAAGAC	1 cut(s)	91
BcoDI	GTCTC	1 cut(s)	55
BfaI	CTAG	1 cut(s)	215
BfuAI	ACCTGC	1 cut(s)	311
BmsI	GCATC	1 cut(s)	374
BpiI	GAAGAC	1 cut(s)	91
BsaJI	CCNNGG	1 cut(s)	282
Bsc4I	CCNNNNNNNGG	1 cut(s)	283
Bse1I	ACTGG	2 cut(s)	366, 373
Bse3DI	GCAATG	1 cut(s)	288
BseDI	CCNNGG	1 cut(s)	282
BseGI	GGATG	1 cut(s)	365
BseLI	CCNNNNNNNGG	1 cut(s)	283
BseMI	GCAATG	1 cut(s)	288
BseMII	CTCAG	1 cut(s)	252
BseNI	ACTGG	2 cut(s)	366, 373
BshFI	GGCC	1 cut(s)	287
BslI	CCNNNNNNNGG	1 cut(s)	283
BsmAI	GTCTC	1 cut(s)	55
BsnI	GGCC	1 cut(s)	287
Bsp1286I	GDGCHC	1 cut(s)	85
Bsp19I	CCATGG	1 cut(s)	282
BspANI	GGCC	1 cut(s)	287
BspCNI	CTCAG	1 cut(s)	253
BspMI	ACCTGC	1 cut(s)	311
BsrDI	GCAATG	1 cut(s)	288
BsrI	ACTGG	2 cut(s)	366, 373
BssECI	CCNNGG	1 cut(s)	282
BssT1I	CCWWGG	1 cut(s)	282
Bst4CI	ACNGT	1 cut(s)	307
BstAPI	GCANNNNNTGC	1 cut(s)	171
BstC8I	GCNNGC	1 cut(s)	167
BstDEI	CTNAG	3 cut(s)	41, 261, 341
BstDSI	CCRYGG	1 cut(s)	282
BstF5I	GGATG	1 cut(s)	365
BstHHI	GCGC	1 cut(s)	244
BstMAI	GTCTC	1 cut(s)	55
BstMWI	GCNNNNNNNGC	1 cut(s)	171
BstV2I	GAAGAC	1 cut(s)	91
BsuRI	GGCC	1 cut(s)	287
BtgI	CCRYGG	1 cut(s)	282
BtsCI	GGATG	1 cut(s)	365
BveI	ACCTGC	1 cut(s)	311
Cac8I	GCNNGC	1 cut(s)	167
CfoI	GCGC	1 cut(s)	244
Csp6I	GTAC	1 cut(s)	265
CviAII	CATG	2 cut(s)	128, 283
CviJI	RGCY	8 cut(s)	22, 46, 66, 83, 205, 218, 287, 312
CviKI_1	RGCY	8 cut(s)	22, 46, 66, 83, 205, 218, 287, 312
CviQI	GTAC	1 cut(s)	265
DdeI	CTNAG	3 cut(s)	41, 261, 341
EaeI	YGGCCR	1 cut(s)	285
Eco130I	CCWWGG	1 cut(s)	282
Eco24I	GRGCYC	1 cut(s)	85
Eco57I	CTGAAG	1 cut(s)	141
EcoT14I	CCWWGG	1 cut(s)	282
EcoT38I	GRGCYC	1 cut(s)	85
ErhI	CCWWGG	1 cut(s)	282
FaeI	CATG	2 cut(s)	131, 286
FaiI	YATR	6 cut(s)	77, 79, 129, 240, 284, 349
FatI	CATG	2 cut(s)	127, 282
FauNDI	CATATG	1 cut(s)	77
FokI	GGATG	1 cut(s)	352
FriOI	GRGCYC	1 cut(s)	85
FspBI	CTAG	1 cut(s)	215
GlaI	GCGC	1 cut(s)	243
HaeIII	GGCC	1 cut(s)	287
HhaI	GCGC	1 cut(s)	244
Hin1II	CATG	2 cut(s)	131, 286
Hin6I	GCGC	1 cut(s)	242
HinP1I	GCGC	1 cut(s)	242
HinfI	GANTC	1 cut(s)	151
Hpy166II	GTNNAC	1 cut(s)	38
Hpy188I	TCNGA	1 cut(s)	380
Hpy188III	TCNNGA	2 cut(s)	148, 256
Hpy8I	GTNNAC	1 cut(s)	38
HpyAV	CCTTC	2 cut(s)	126, 379
HpyCH4III	ACNGT	1 cut(s)	307
HpyCH4V	TGCA	3 cut(s)	165, 293, 320
HpyF10VI	GCNNNNNNNGC	1 cut(s)	171
HpyF3I	CTNAG	3 cut(s)	41, 261, 341
Hsp92II	CATG	2 cut(s)	131, 286
HspAI	GCGC	1 cut(s)	242
LpnPI	CCDG	4 cut(s)	14, 133, 306, 347
LweI	GCATC	1 cut(s)	374
MaeI	CTAG	1 cut(s)	215
MboII	GAAGA	1 cut(s)	91
MhlI	GDGCHC	1 cut(s)	85
MlsI	TGGCCA	1 cut(s)	287
MluCI	AATT	1 cut(s)	328
MluNI	TGGCCA	1 cut(s)	287
MlyI	GAGTC	1 cut(s)	145
Mox20I	TGGCCA	1 cut(s)	287
MscI	TGGCCA	1 cut(s)	287
MseI	TTAA	2 cut(s)	189, 327
Msp20I	TGGCCA	1 cut(s)	287
MwoI	GCNNNNNNNGC	1 cut(s)	171
NcoI	CCATGG	1 cut(s)	282
NdeI	CATATG	1 cut(s)	77
NlaIII	CATG	2 cut(s)	131, 286
PcsI	WCGNNNNNNNCGW	1 cut(s)	69
PflMI	CCANNNNNTGG	1 cut(s)	283
PleI	GAGTC	1 cut(s)	145
PpsI	GAGTC	1 cut(s)	145
PshBI	ATTAAT	1 cut(s)	327
RsaI	GTAC	1 cut(s)	266
RsaNI	GTAC	1 cut(s)	265
SaqAI	TTAA	2 cut(s)	189, 327
SchI	GAGTC	1 cut(s)	145
SduI	GDGCHC	1 cut(s)	85
SetI	ASST	7 cut(s)	195, 216, 220, 224, 270, 325, 342
SfaNI	GCATC	1 cut(s)	374
Sse9I	AATT	1 cut(s)	328
SspMI	CTAG	1 cut(s)	215
StyI	CCWWGG	1 cut(s)	282
TaaI	ACNGT	1 cut(s)	307
TaqI	TCGA	2 cut(s)	72, 336
TasI	AATT	1 cut(s)	328
Tru1I	TTAA	2 cut(s)	189, 327
Tru9I	TTAA	2 cut(s)	189, 327
TspDTI	ATGAA	3 cut(s)	17, 116, 223
TspGWI	ACGGA	1 cut(s)	77
Van91I	CCANNNNNTGG	1 cut(s)	283
VspI	ATTAAT	1 cut(s)	327
XspI	CTAG	1 cut(s)	215

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.