Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0011154

Physical Location & Seq

Genomic Coordinates Forward (+)

13839647 .. 13841847

Gene Structure 2201 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g10450.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

ATGGCCCACATCCCAACTTGTCCATCAAACGCATTGTGTAGGCTTAAACCCCGAACATACTGGAAACTCCACGGCACAAGGCTGACTTGCCGGTGCTGTGCTGCTCGCCGCTCTGCTGACTTCATTTGCTTTGTTTTGGTTTGCTTTGTTTTGACGCCGCCGCTAGGGGTTTCAAGCTCTCTTGCAATGAAGGCTCTAAGCTGGTGGCTGATGCTAGTGGGTTCGCTCCGGCTGGTCTCCGTCTGGTTCGGGTTCTTCGACATTTGGGCTCTCCGCCTCGTCGTCTTCTCCAAATCCCCCATGACTGAAGTTCATGGGAGGACATTTGGTGTCTGGACTCTTTTAACTTGCACACTCTGCTATCTCTGTGCCTTTAACCTTGAAAACAAGCCTCTGTACCTAGCTACCTTTCTGTCGTTTGTCTATGCACTCGGCCATTTCTTGACCGAGTACCTAATATATCAGACGATGGCCATTGCAAATCTCTCAACTGTTGGCTTTTTTGCAGGCACGTCGATAATCTGGATGCTGTTGCAATGGAATGCACATCAAGCTCAACCTATATTGAAATCAGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006066 GO:0006629 GO:0006694 GO:0006696 GO:0008150 GO:0008152 GO:0008202 GO:0008204 GO:0008610 GO:0009058 GO:0009987 GO:0012505 GO:0016020 GO:0016125 GO:0016126 GO:0016128 GO:0016129 GO:0030674 GO:0031984 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044107 GO:0044108 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046165 GO:0060090 GO:0071704 GO:0097384 GO:0098827 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617 GO:1902652 GO:1902653

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Erg28

Protein Analysis

193

Amino Acids

21.81

Weight (kDa)

9.23

Isoelectric Point (pI)

32.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011154)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10030
fragaria_vesca	FvH4_2g03000 FvH4_2g03000 FvH4_2g03000
malus_domestica	MD05G1108500.v1.1 MD10G1112500.v1.1
prunus_persica	Prupe.8G152200_v2.0.a1
pyrus_communis	pycom05g10450
rosa_chinensis	RchiOBHm_Chr6g0247791
rosa_laevigata	RLG00000015179
rosa_multiflora	Rmu_sc0001983.1_g000011 Rmu_sc0009569.1_g000010
rosa_roxburghii	Rroxscaffold_180G00433240 Rroxscaffold_7G00213650
rosa_rugosa	Rorug05G0528900
rosa_samantha	Rh6AG043700 Rh6BG038500 Rh6CG037200 Rh6DG034300
rosa_wichuraiana	Rw6G003790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	111
AciI	CCGC	4 cut(s)	109, 158, 161, 274
AcoI	YGGCCR	2 cut(s)	433, 471
AcuI	CTGAAG	1 cut(s)	327
AcyI	GRCGYC	1 cut(s)	155
AfaI	GTAC	2 cut(s)	398, 452
AfiI	CCNNNNNNNGG	1 cut(s)	164
AgsI	TTSAA	3 cut(s)	174, 383, 568
AjiI	CACGTC	1 cut(s)	513
AluBI	AGCT	4 cut(s)	177, 201, 404, 554
AluI	AGCT	4 cut(s)	177, 201, 404, 554
Alw26I	GTCTC	1 cut(s)	241
AoxI	GGCC	3 cut(s)	3, 433, 471
ApeKI	GCWGC	1 cut(s)	101
AspS9I	GGNCC	1 cut(s)	4
BalI	TGGCCA	1 cut(s)	473
BanII	GRGCYC	1 cut(s)	271
BbsI	GAAGAC	1 cut(s)	277
BbvI	GCAGC	1 cut(s)	88
BccI	CCATC	2 cut(s)	31, 463
BceAI	ACGGC	1 cut(s)	88
BcgI	CGANNNNNNTGC	2 cut(s)	495, 529
BcoDI	GTCTC	1 cut(s)	241
BfaI	CTAG	3 cut(s)	164, 215, 401
BisI	GCNGC	4 cut(s)	102, 109, 158, 161
BlsI	GCNGC	4 cut(s)	103, 110, 159, 162
BmgBI	CACGTC	1 cut(s)	513
BmgT120I	GGNCC	1 cut(s)	4
BmsI	GCATC	2 cut(s)	201, 516
BpiI	GAAGAC	1 cut(s)	277
BsaHI	GRCGYC	1 cut(s)	155
BsaI	GGTCTC	1 cut(s)	241
BsaJI	CCNNGG	1 cut(s)	70
Bsc4I	CCNNNNNNNGG	1 cut(s)	164
Bse118I	RCCGGY	1 cut(s)	90
Bse1I	ACTGG	1 cut(s)	65
Bse3DI	GCAATG	3 cut(s)	192, 474, 542
BseDI	CCNNGG	1 cut(s)	70
BseGI	GGATG	2 cut(s)	9, 531
BseLI	CCNNNNNNNGG	1 cut(s)	164
BseMI	GCAATG	3 cut(s)	192, 474, 542
BseNI	ACTGG	1 cut(s)	65
BseXI	GCAGC	1 cut(s)	88
BshFI	GGCC	3 cut(s)	5, 435, 473
BsiSI	CCGG	2 cut(s)	91, 229
BslI	CCNNNNNNNGG	1 cut(s)	164
BsmAI	GTCTC	1 cut(s)	241
BsmI	GAATGC	1 cut(s)	547
BsnI	GGCC	3 cut(s)	5, 435, 473
Bso31I	GGTCTC	1 cut(s)	241
Bsp1286I	GDGCHC	1 cut(s)	271
BspACI	CCGC	4 cut(s)	109, 158, 161, 274
BspANI	GGCC	3 cut(s)	5, 435, 473
BspTNI	GGTCTC	1 cut(s)	241
BsrBI	CCGCTC	1 cut(s)	111
BsrDI	GCAATG	3 cut(s)	192, 474, 542
BsrFI	RCCGGY	1 cut(s)	90
BsrI	ACTGG	1 cut(s)	65
BssAI	RCCGGY	1 cut(s)	90
BssECI	CCNNGG	1 cut(s)	70
BssNI	GRCGYC	1 cut(s)	155
Bst4CI	ACNGT	1 cut(s)	493
BstACI	GRCGYC	1 cut(s)	155
BstAPI	GCANNNNNTGC	1 cut(s)	357
BstC8I	GCNNGC	2 cut(s)	106, 508
BstDEI	CTNAG	1 cut(s)	197
BstDSI	CCRYGG	1 cut(s)	70
BstF5I	GGATG	2 cut(s)	9, 531
BstMAI	GTCTC	1 cut(s)	241
BstMWI	GCNNNNNNNGC	3 cut(s)	191, 357, 551
BstV1I	GCAGC	1 cut(s)	88
BstV2I	GAAGAC	1 cut(s)	277
BsuRI	GGCC	3 cut(s)	5, 435, 473
BtgI	CCRYGG	1 cut(s)	70
BtrI	CACGTC	1 cut(s)	513
BtsCI	GGATG	2 cut(s)	9, 531
Cac8I	GCNNGC	2 cut(s)	106, 508
Cfr10I	RCCGGY	1 cut(s)	90
Cfr13I	GGNCC	1 cut(s)	4
CseI	GACGC	1 cut(s)	163
Csp6I	GTAC	2 cut(s)	397, 451
CviAII	CATG	2 cut(s)	301, 314
CviQI	GTAC	2 cut(s)	397, 451
DdeI	CTNAG	1 cut(s)	197
EaeI	YGGCCR	2 cut(s)	433, 471
EciI	GGCGGA	1 cut(s)	263
Eco24I	GRGCYC	1 cut(s)	271
Eco31I	GGTCTC	1 cut(s)	241
Eco57I	CTGAAG	1 cut(s)	327
EcoT38I	GRGCYC	1 cut(s)	271
FaeI	CATG	2 cut(s)	304, 317
FaiI	YATR	6 cut(s)	58, 302, 315, 426, 460, 563
FalI	AAGNNNNNCTT	2 cut(s)	70, 102
FatI	CATG	2 cut(s)	300, 313
Fnu4HI	GCNGC	4 cut(s)	102, 109, 158, 161
FokI	GGATG	1 cut(s)	538
FriOI	GRGCYC	1 cut(s)	271
Fsp4HI	GCNGC	4 cut(s)	102, 109, 158, 161
FspBI	CTAG	3 cut(s)	164, 215, 401
GluI	GCNGC	4 cut(s)	102, 109, 158, 161
HaeIII	GGCC	3 cut(s)	5, 435, 473
HapII	CCGG	2 cut(s)	91, 229
HgaI	GACGC	1 cut(s)	163
Hin1I	GRCGYC	1 cut(s)	155
Hin1II	CATG	2 cut(s)	304, 317
HinfI	GANTC	1 cut(s)	337
HpaII	CCGG	2 cut(s)	91, 229
Hpy188I	TCNGA	2 cut(s)	465, 574
Hpy188III	TCNNGA	3 cut(s)	334, 442, 523
Hpy99I	CGWCG	2 cut(s)	284, 517
HpyAV	CCTTC	1 cut(s)	184
HpyCH4III	ACNGT	1 cut(s)	493
HpyCH4IV	ACGT	1 cut(s)	512
HpyCH4V	TGCA	7 cut(s)	185, 351, 428, 479, 506, 535, 545
HpyF10VI	GCNNNNNNNGC	3 cut(s)	191, 357, 551
HpyF3I	CTNAG	1 cut(s)	197
HpySE526I	ACGT	1 cut(s)	512
Hsp92I	GRCGYC	1 cut(s)	155
Hsp92II	CATG	2 cut(s)	304, 317
LmnI	GCTCC	1 cut(s)	231
LpnPI	CCDG	9 cut(s)	46, 104, 187, 218, 229, 242, 319, 492, 508
Lsp1109I	GCAGC	1 cut(s)	88
LweI	GCATC	2 cut(s)	201, 516
MaeI	CTAG	3 cut(s)	164, 215, 401
MaeII	ACGT	1 cut(s)	512
MbiI	CCGCTC	1 cut(s)	111
MboII	GAAGA	2 cut(s)	247, 277
MhlI	GDGCHC	1 cut(s)	271
MlsI	TGGCCA	1 cut(s)	473
MluNI	TGGCCA	1 cut(s)	473
MlyI	GAGTC	1 cut(s)	331
MnlI	CCTC	3 cut(s)	287, 312, 402
Mox20I	TGGCCA	1 cut(s)	473
MscI	TGGCCA	1 cut(s)	473
MseI	TTAA	3 cut(s)	45, 344, 375
Msp20I	TGGCCA	1 cut(s)	473
MspI	CCGG	2 cut(s)	91, 229
Mva1269I	GAATGC	1 cut(s)	547
MwoI	GCNNNNNNNGC	3 cut(s)	191, 357, 551
NlaIII	CATG	2 cut(s)	304, 317
NmeAIII	GCCGAG	1 cut(s)	411
PcsI	WCGNNNNNNNCGW	1 cut(s)	255
PctI	GAATGC	1 cut(s)	547
PkrI	GCNGC	4 cut(s)	103, 110, 159, 162
PleI	GAGTC	1 cut(s)	331
PpsI	GAGTC	1 cut(s)	331
PspPI	GGNCC	1 cut(s)	4
RsaI	GTAC	2 cut(s)	398, 452
RsaNI	GTAC	2 cut(s)	397, 451
SaqAI	TTAA	3 cut(s)	45, 344, 375
SatI	GCNGC	4 cut(s)	102, 109, 158, 161
Sau96I	GGNCC	1 cut(s)	4
SchI	GAGTC	1 cut(s)	331
SduI	GDGCHC	1 cut(s)	271
SfaNI	GCATC	2 cut(s)	201, 516
SsiI	CCGC	4 cut(s)	109, 158, 161, 274
SspMI	CTAG	3 cut(s)	164, 215, 401
TaaI	ACNGT	1 cut(s)	493
TaiI	ACGT	1 cut(s)	515
TaqI	TCGA	2 cut(s)	258, 515
TaqII	GACCGA	1 cut(s)	461
TauI	GCSGC	3 cut(s)	111, 160, 163
Tru1I	TTAA	3 cut(s)	45, 344, 375
Tru9I	TTAA	3 cut(s)	45, 344, 375
TseI	GCWGC	1 cut(s)	101
TspDTI	ATGAA	3 cut(s)	112, 203, 302
TspGWI	ACGGA	1 cut(s)	229
XspI	CTAG	3 cut(s)	164, 215, 401

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.