Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0011154

Physical Location & Seq

Genomic Coordinates Forward (+)

22281406 .. 22283722

Gene Structure 2317 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1108500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

ATGAAGGCGCTTAGCTGGTGGCTGATGGTCGTCGGTTCGCTCCGGCTGGTCTCCGTCTGGTTCGGGTTCTTTGACATTTGGGCTCTCCGCCTCGCAGTCTTCTCCAAATCCCCCATGACTGAAGTTCATGGGAGGACATTTGGTGTCTGGACTCTTTTAACTTGCACACTCTGCTATCTCTGTGCCTTTAACCTTGAAAACAAGCCGCTGTACCTAGCTACCTTTCTGTCGTTTGTCTATGCACTCGGTCATTTCTTGACTGAGTACGTAATATATCAGACAATGGCCATTGCAAATCTCTCAACTGTCGGCTTTTTTGCAGGCACGTCGATAATCTGGATGATGTTGCAATGGAATGCACATCAAGCTCAACCTGTGTTGAAATCAGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006066 GO:0006629 GO:0006694 GO:0006696 GO:0008150 GO:0008152 GO:0008202 GO:0008204 GO:0008610 GO:0009058 GO:0009987 GO:0012505 GO:0016020 GO:0016125 GO:0016126 GO:0016128 GO:0016129 GO:0030674 GO:0031984 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044107 GO:0044108 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046165 GO:0060090 GO:0071704 GO:0097384 GO:0098827 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617 GO:1902652 GO:1902653

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Erg28

Protein Analysis

131

Amino Acids

14.92

Weight (kDa)

8.52

Isoelectric Point (pI)

30.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Erg28	PF03694	4 - 112	5.2e-30	Erg28 like protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0011154)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10030
fragaria_vesca	FvH4_2g03000 FvH4_2g03000 FvH4_2g03000
malus_domestica	MD05G1108500.v1.1 MD10G1112500.v1.1
prunus_persica	Prupe.8G152200_v2.0.a1
pyrus_communis	pycom05g10450
rosa_chinensis	RchiOBHm_Chr6g0247791
rosa_laevigata	RLG00000015179
rosa_multiflora	Rmu_sc0001983.1_g000011 Rmu_sc0009569.1_g000010
rosa_roxburghii	Rroxscaffold_180G00433240 Rroxscaffold_7G00213650
rosa_rugosa	Rorug05G0528900
rosa_samantha	Rh6AG043700 Rh6BG038500 Rh6CG037200 Rh6DG034300
rosa_wichuraiana	Rw6G003790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	88, 206
AcoI	YGGCCR	1 cut(s)	285
AcuI	CTGAAG	1 cut(s)	141
AfaI	GTAC	2 cut(s)	212, 266
AgsI	TTSAA	2 cut(s)	197, 382
AjiI	CACGTC	1 cut(s)	327
AluBI	AGCT	3 cut(s)	15, 218, 368
AluI	AGCT	3 cut(s)	15, 218, 368
Alw26I	GTCTC	1 cut(s)	55
AoxI	GGCC	1 cut(s)	285
AspLEI	GCGC	1 cut(s)	10
BalI	TGGCCA	1 cut(s)	287
BanII	GRGCYC	1 cut(s)	85
BbsI	GAAGAC	1 cut(s)	91
BccI	CCATC	1 cut(s)	19
BcgI	CGANNNNNNTGC	2 cut(s)	309, 343
BcoDI	GTCTC	1 cut(s)	55
BfaI	CTAG	1 cut(s)	215
BfoI	RGCGCY	1 cut(s)	11
BisI	GCNGC	1 cut(s)	206
BlpI	GCTNAGC	1 cut(s)	11
BlsI	GCNGC	1 cut(s)	207
BmgBI	CACGTC	1 cut(s)	327
BpiI	GAAGAC	1 cut(s)	91
Bpu1102I	GCTNAGC	1 cut(s)	11
BsaAI	YACGTR	1 cut(s)	268
BsaI	GGTCTC	1 cut(s)	55
Bse3DI	GCAATG	2 cut(s)	288, 356
BseGI	GGATG	1 cut(s)	345
BseMI	GCAATG	2 cut(s)	288, 356
BseMII	CTCAG	1 cut(s)	252
BshFI	GGCC	1 cut(s)	287
BsiSI	CCGG	1 cut(s)	43
BsmAI	GTCTC	1 cut(s)	55
BsmI	GAATGC	1 cut(s)	361
BsnI	GGCC	1 cut(s)	287
Bso31I	GGTCTC	1 cut(s)	55
Bsp1286I	GDGCHC	1 cut(s)	85
Bsp1720I	GCTNAGC	1 cut(s)	11
BspACI	CCGC	2 cut(s)	88, 206
BspANI	GGCC	1 cut(s)	287
BspCNI	CTCAG	1 cut(s)	253
BspTNI	GGTCTC	1 cut(s)	55
BsrDI	GCAATG	2 cut(s)	288, 356
Bst4CI	ACNGT	1 cut(s)	307
BstAPI	GCANNNNNTGC	1 cut(s)	171
BstBAI	YACGTR	1 cut(s)	268
BstC8I	GCNNGC	1 cut(s)	322
BstDEI	CTNAG	2 cut(s)	11, 261
BstF5I	GGATG	1 cut(s)	345
BstH2I	RGCGCY	1 cut(s)	11
BstHHI	GCGC	1 cut(s)	10
BstMAI	GTCTC	1 cut(s)	55
BstMWI	GCNNNNNNNGC	2 cut(s)	171, 365
BstSNI	TACGTA	1 cut(s)	268
BstV2I	GAAGAC	1 cut(s)	91
BsuRI	GGCC	1 cut(s)	287
BtrI	CACGTC	1 cut(s)	327
BtsCI	GGATG	1 cut(s)	345
Cac8I	GCNNGC	1 cut(s)	322
CfoI	GCGC	1 cut(s)	10
Csp6I	GTAC	2 cut(s)	211, 265
CviAII	CATG	2 cut(s)	115, 128
CviJI	RGCY	9 cut(s)	15, 22, 46, 83, 205, 218, 287, 312, 368
CviKI_1	RGCY	9 cut(s)	15, 22, 46, 83, 205, 218, 287, 312, 368
CviQI	GTAC	2 cut(s)	211, 265
DdeI	CTNAG	2 cut(s)	11, 261
EaeI	YGGCCR	1 cut(s)	285
EciI	GGCGGA	1 cut(s)	77
Eco105I	TACGTA	1 cut(s)	268
Eco24I	GRGCYC	1 cut(s)	85
Eco31I	GGTCTC	1 cut(s)	55
Eco57I	CTGAAG	1 cut(s)	141
EcoT38I	GRGCYC	1 cut(s)	85
FaeI	CATG	2 cut(s)	118, 131
FaiI	YATR	4 cut(s)	116, 129, 240, 274
FatI	CATG	2 cut(s)	114, 127
Fnu4HI	GCNGC	1 cut(s)	206
FokI	GGATG	1 cut(s)	352
FriOI	GRGCYC	1 cut(s)	85
Fsp4HI	GCNGC	1 cut(s)	206
FspBI	CTAG	1 cut(s)	215
GlaI	GCGC	1 cut(s)	9
GluI	GCNGC	1 cut(s)	206
HaeII	RGCGCY	1 cut(s)	11
HaeIII	GGCC	1 cut(s)	287
HapII	CCGG	1 cut(s)	43
HhaI	GCGC	1 cut(s)	10
Hin1II	CATG	2 cut(s)	118, 131
Hin6I	GCGC	1 cut(s)	8
HinP1I	GCGC	1 cut(s)	8
HinfI	GANTC	1 cut(s)	151
HpaII	CCGG	1 cut(s)	43
Hpy188I	TCNGA	2 cut(s)	279, 388
Hpy188III	TCNNGA	3 cut(s)	148, 256, 337
Hpy99I	CGWCG	2 cut(s)	35, 331
HpyCH4III	ACNGT	1 cut(s)	307
HpyCH4IV	ACGT	2 cut(s)	267, 326
HpyCH4V	TGCA	6 cut(s)	165, 242, 293, 320, 349, 359
HpyF10VI	GCNNNNNNNGC	2 cut(s)	171, 365
HpyF3I	CTNAG	2 cut(s)	11, 261
HpySE526I	ACGT	2 cut(s)	267, 326
Hsp92II	CATG	2 cut(s)	118, 131
HspAI	GCGC	1 cut(s)	8
LmnI	GCTCC	1 cut(s)	45
LpnPI	CCDG	7 cut(s)	32, 43, 56, 133, 306, 322, 387
MaeI	CTAG	1 cut(s)	215
MaeII	ACGT	2 cut(s)	267, 326
MboII	GAAGA	1 cut(s)	91
MhlI	GDGCHC	1 cut(s)	85
MlsI	TGGCCA	1 cut(s)	287
MluNI	TGGCCA	1 cut(s)	287
MlyI	GAGTC	1 cut(s)	145
MnlI	CCTC	2 cut(s)	101, 126
Mox20I	TGGCCA	1 cut(s)	287
MscI	TGGCCA	1 cut(s)	287
MseI	TTAA	2 cut(s)	158, 189
Msp20I	TGGCCA	1 cut(s)	287
MspA1I	CMGCKG	1 cut(s)	208
MspI	CCGG	1 cut(s)	43
Mva1269I	GAATGC	1 cut(s)	361
MwoI	GCNNNNNNNGC	2 cut(s)	171, 365
NlaIII	CATG	2 cut(s)	118, 131
PctI	GAATGC	1 cut(s)	361
PkrI	GCNGC	1 cut(s)	207
PleI	GAGTC	1 cut(s)	145
PpsI	GAGTC	1 cut(s)	145
Ppu21I	YACGTR	1 cut(s)	268
RsaI	GTAC	2 cut(s)	212, 266
RsaNI	GTAC	2 cut(s)	211, 265
SaqAI	TTAA	2 cut(s)	158, 189
SatI	GCNGC	1 cut(s)	206
SchI	GAGTC	1 cut(s)	145
SduI	GDGCHC	1 cut(s)	85
SetI	ASST	9 cut(s)	17, 195, 216, 220, 224, 270, 329, 370, 376
SnaBI	TACGTA	1 cut(s)	268
SsiI	CCGC	2 cut(s)	88, 206
SspMI	CTAG	1 cut(s)	215
TaaI	ACNGT	1 cut(s)	307
TaiI	ACGT	2 cut(s)	270, 329
TaqI	TCGA	1 cut(s)	329
TaqII	GACCGA	1 cut(s)	236
TauI	GCSGC	1 cut(s)	208
Tru1I	TTAA	2 cut(s)	158, 189
Tru9I	TTAA	2 cut(s)	158, 189
TspDTI	ATGAA	2 cut(s)	17, 116
TspGWI	ACGGA	1 cut(s)	43
XspI	CTAG	1 cut(s)	215

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.