Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0011154

Physical Location & Seq

Genomic Coordinates Reverse (-)

6302672 .. 6305548

Gene Structure 2877 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG038500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

ATGAAGGCGTTGAGTTGGTGGCTAATGCTGGTGGGTTCACTTAGGCTTGTCTCTGTTTGGTTCGGCTTCTTCAACATATGGGCTCTCCGTCTTGCTGTCTTCTCCAAATCCCCAATGACTGAAGTTCATGGAAGGACATTTGGTGTCTGGACTCTCCTTACTTGCACGCTCTGCTATCTTTGTGCCTTTAACCTTGACAACAAGCCACTCTACCTAGTTACCTTCCTATCATTCATCTATGCCCTTGGTCATTTCTTGACCGAGTACCTAATCTACCACACCATGGCCATTGCAAATCTATCAACTGTCGGCTTTTTTGCAGGCACATCGATTATATGGATGTTGTTGCAGTGGAATTCACATCAAGCTCAAGCTGCGGTGAAATCAGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006066 GO:0006629 GO:0006694 GO:0006696 GO:0008150 GO:0008152 GO:0008202 GO:0008204 GO:0008610 GO:0009058 GO:0009987 GO:0012505 GO:0016020 GO:0016125 GO:0016126 GO:0016128 GO:0016129 GO:0030674 GO:0031984 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044107 GO:0044108 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046165 GO:0060090 GO:0071704 GO:0097384 GO:0098827 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617 GO:1902652 GO:1902653

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Erg28

Protein Analysis

130

Amino Acids

14.91

Weight (kDa)

8.91

Isoelectric Point (pI)

31.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Erg28	PF03694	4 - 112	5e-30	Erg28 like protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0011154)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10030
fragaria_vesca	FvH4_2g03000 FvH4_2g03000 FvH4_2g03000
malus_domestica	MD05G1108500.v1.1 MD10G1112500.v1.1
prunus_persica	Prupe.8G152200_v2.0.a1
pyrus_communis	pycom05g10450
rosa_chinensis	RchiOBHm_Chr6g0247791
rosa_laevigata	RLG00000015179
rosa_multiflora	Rmu_sc0001983.1_g000011 Rmu_sc0009569.1_g000010
rosa_roxburghii	Rroxscaffold_180G00433240 Rroxscaffold_7G00213650
rosa_rugosa	Rorug05G0528900
rosa_samantha	Rh6AG043700 Rh6BG038500 Rh6CG037200 Rh6DG034300
rosa_wichuraiana	Rw6G003790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	283
AciI	CCGC	1 cut(s)	377
AcoI	YGGCCR	1 cut(s)	285
AcsI	RAATTY	1 cut(s)	355
AcuI	CTGAAG	1 cut(s)	141
AfaI	GTAC	1 cut(s)	266
AfiI	CCNNNNNNNGG	1 cut(s)	283
AgsI	TTSAA	1 cut(s)	73
AluBI	AGCT	2 cut(s)	368, 374
AluI	AGCT	2 cut(s)	368, 374
Alw26I	GTCTC	1 cut(s)	55
AoxI	GGCC	1 cut(s)	285
ApeKI	GCWGC	1 cut(s)	374
ApoI	RAATTY	1 cut(s)	355
AsuHPI	GGTGA	1 cut(s)	391
BalI	TGGCCA	1 cut(s)	287
BanII	GRGCYC	1 cut(s)	85
BbsI	GAAGAC	1 cut(s)	91
BbvI	GCAGC	1 cut(s)	361
BcgI	CGANNNNNNTGC	2 cut(s)	309, 343
BcoDI	GTCTC	1 cut(s)	55
BfaI	CTAG	1 cut(s)	215
BisI	GCNGC	1 cut(s)	375
BlsI	GCNGC	1 cut(s)	376
BpiI	GAAGAC	1 cut(s)	91
BpuEI	CTTGAG	1 cut(s)	354
Bsa29I	ATCGAT	1 cut(s)	329
BsaJI	CCNNGG	2 cut(s)	244, 282
Bsc4I	CCNNNNNNNGG	1 cut(s)	283
Bse3DI	GCAATG	1 cut(s)	288
BseCI	ATCGAT	1 cut(s)	329
BseDI	CCNNGG	2 cut(s)	244, 282
BseGI	GGATG	1 cut(s)	345
BseLI	CCNNNNNNNGG	1 cut(s)	283
BseMI	GCAATG	1 cut(s)	288
BseXI	GCAGC	1 cut(s)	361
BshFI	GGCC	1 cut(s)	287
BshVI	ATCGAT	1 cut(s)	329
BslI	CCNNNNNNNGG	1 cut(s)	283
BsmAI	GTCTC	1 cut(s)	55
BsnI	GGCC	1 cut(s)	287
Bsp1286I	GDGCHC	1 cut(s)	85
Bsp19I	CCATGG	1 cut(s)	282
BspACI	CCGC	1 cut(s)	377
BspANI	GGCC	1 cut(s)	287
BspDI	ATCGAT	1 cut(s)	329
BsrDI	GCAATG	1 cut(s)	288
BssECI	CCNNGG	2 cut(s)	244, 282
BssT1I	CCWWGG	2 cut(s)	244, 282
Bst4CI	ACNGT	1 cut(s)	307
BstAPI	GCANNNNNTGC	1 cut(s)	171
BstC8I	GCNNGC	2 cut(s)	167, 322
BstDEI	CTNAG	1 cut(s)	41
BstDSI	CCRYGG	1 cut(s)	282
BstF5I	GGATG	1 cut(s)	345
BstMAI	GTCTC	1 cut(s)	55
BstMWI	GCNNNNNNNGC	2 cut(s)	171, 374
BstV1I	GCAGC	1 cut(s)	361
BstV2I	GAAGAC	1 cut(s)	91
Bsu15I	ATCGAT	1 cut(s)	329
BsuRI	GGCC	1 cut(s)	287
BsuTUI	ATCGAT	1 cut(s)	329
BtgI	CCRYGG	1 cut(s)	282
BtsCI	GGATG	1 cut(s)	345
BtsI	GCAGTG	1 cut(s)	356
BtsIMutI	CAGTG	1 cut(s)	356
Cac8I	GCNNGC	2 cut(s)	167, 322
ClaI	ATCGAT	1 cut(s)	329
Csp6I	GTAC	1 cut(s)	265
CviAII	CATG	2 cut(s)	128, 283
CviJI	RGCY	9 cut(s)	22, 46, 66, 83, 205, 287, 312, 368, 374
CviKI_1	RGCY	9 cut(s)	22, 46, 66, 83, 205, 287, 312, 368, 374
CviQI	GTAC	1 cut(s)	265
DdeI	CTNAG	1 cut(s)	41
EaeI	YGGCCR	1 cut(s)	285
Eco130I	CCWWGG	2 cut(s)	244, 282
Eco24I	GRGCYC	1 cut(s)	85
Eco57I	CTGAAG	1 cut(s)	141
EcoRI	GAATTC	1 cut(s)	355
EcoT14I	CCWWGG	2 cut(s)	244, 282
EcoT38I	GRGCYC	1 cut(s)	85
ErhI	CCWWGG	2 cut(s)	244, 282
FaeI	CATG	2 cut(s)	131, 286
FaiI	YATR	7 cut(s)	77, 79, 129, 240, 284, 335, 337
FatI	CATG	2 cut(s)	127, 282
FauNDI	CATATG	1 cut(s)	77
Fnu4HI	GCNGC	1 cut(s)	375
FokI	GGATG	1 cut(s)	352
FriOI	GRGCYC	1 cut(s)	85
Fsp4HI	GCNGC	1 cut(s)	375
FspBI	CTAG	1 cut(s)	215
GluI	GCNGC	1 cut(s)	375
HaeIII	GGCC	1 cut(s)	287
Hin1II	CATG	2 cut(s)	131, 286
HinfI	GANTC	1 cut(s)	151
HphI	GGTGA	1 cut(s)	391
Hpy166II	GTNNAC	1 cut(s)	38
Hpy188I	TCNGA	1 cut(s)	388
Hpy188III	TCNNGA	2 cut(s)	148, 256
Hpy8I	GTNNAC	1 cut(s)	38
HpyAV	CCTTC	2 cut(s)	126, 232
HpyCH4III	ACNGT	1 cut(s)	307
HpyCH4V	TGCA	4 cut(s)	165, 293, 320, 349
HpyF10VI	GCNNNNNNNGC	2 cut(s)	171, 374
HpyF3I	CTNAG	1 cut(s)	41
Hsp92II	CATG	2 cut(s)	131, 286
LpnPI	CCDG	3 cut(s)	14, 133, 306
Lsp1109I	GCAGC	1 cut(s)	361
MaeI	CTAG	1 cut(s)	215
MaeIII	GTNAC	1 cut(s)	217
MboII	GAAGA	2 cut(s)	61, 91
MhlI	GDGCHC	1 cut(s)	85
MlsI	TGGCCA	1 cut(s)	287
MluCI	AATT	1 cut(s)	355
MluNI	TGGCCA	1 cut(s)	287
MlyI	GAGTC	1 cut(s)	145
Mox20I	TGGCCA	1 cut(s)	287
MscI	TGGCCA	1 cut(s)	287
MseI	TTAA	1 cut(s)	189
Msp20I	TGGCCA	1 cut(s)	287
MwoI	GCNNNNNNNGC	2 cut(s)	171, 374
NcoI	CCATGG	1 cut(s)	282
NdeI	CATATG	1 cut(s)	77
NlaIII	CATG	2 cut(s)	131, 286
PflMI	CCANNNNNTGG	1 cut(s)	283
PkrI	GCNGC	1 cut(s)	376
PleI	GAGTC	1 cut(s)	145
PpsI	GAGTC	1 cut(s)	145
RsaI	GTAC	1 cut(s)	266
RsaNI	GTAC	1 cut(s)	265
SaqAI	TTAA	1 cut(s)	189
SatI	GCNGC	1 cut(s)	375
SchI	GAGTC	1 cut(s)	145
SduI	GDGCHC	1 cut(s)	85
SetI	ASST	6 cut(s)	195, 216, 224, 270, 370, 376
SmlI	CTYRAG	1 cut(s)	369
SmoI	CTYRAG	1 cut(s)	369
Sse9I	AATT	1 cut(s)	355
SsiI	CCGC	1 cut(s)	377
SspMI	CTAG	1 cut(s)	215
StyI	CCWWGG	2 cut(s)	244, 282
TaaI	ACNGT	1 cut(s)	307
TaqI	TCGA	1 cut(s)	329
TaqII	GACCGA	1 cut(s)	275
TasI	AATT	1 cut(s)	355
Tru1I	TTAA	1 cut(s)	189
Tru9I	TTAA	1 cut(s)	189
TscAI	CASTG	1 cut(s)	356
TseI	GCWGC	1 cut(s)	374
TspDTI	ATGAA	3 cut(s)	17, 116, 223
TspGWI	ACGGA	1 cut(s)	77
TspRI	CASTG	1 cut(s)	356
Van91I	CCANNNNNTGG	1 cut(s)	283
XapI	RAATTY	1 cut(s)	355
XspI	CTAG	1 cut(s)	215

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.