Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0011154

Physical Location & Seq

Genomic Coordinates Forward (+)

18611908 .. 18614698

Gene Structure 2791 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1112500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

ATGAAGGTGCTGAGCTGGTGGCTGATGGTGGTGGGCTCGCTCCGGCTGGTCTCCGTTTGGTTCGGGTTCTTCCACATTTGGGCCCTCCGCCTCGCCATCTTCTCCAAATCCCCCAGACATTTGGTGTCTGAAGTTCATGGGAGGACATTTGGTGTCTGGACTCTTTTAACTTGCACACTCTGCTATCTCTGCGCCGTTAACCTTGAAAACAAGGCTCTCTACCTATCTACGTTTCCGTCGTTTGTCTATGCACTCGGTCATTTCCTGTCCGAGTACCTAACATATCAGACGATGGCCATTGCAAATCTTTCTACTGTCAGCTTTTTTGCAGGCACGGCGATAATCTGGATGCTGCTGCAATGGAATGCACATCAAGCGCAACCTGTGTTGAAATCAGAAAGAAGTGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006066 GO:0006629 GO:0006694 GO:0006696 GO:0008150 GO:0008152 GO:0008202 GO:0008204 GO:0008610 GO:0009058 GO:0009987 GO:0012505 GO:0016020 GO:0016125 GO:0016126 GO:0016128 GO:0016129 GO:0030674 GO:0031984 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044107 GO:0044108 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046165 GO:0060090 GO:0071704 GO:0097384 GO:0098827 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617 GO:1902652 GO:1902653

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Erg28

Protein Analysis

137

Amino Acids

15.6

Weight (kDa)

9.41

Isoelectric Point (pI)

40.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Erg28	PF03694	4 - 115	1.3e-27	Erg28 like protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0011154)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10030
fragaria_vesca	FvH4_2g03000 FvH4_2g03000 FvH4_2g03000
malus_domestica	MD05G1108500.v1.1 MD10G1112500.v1.1
prunus_persica	Prupe.8G152200_v2.0.a1
pyrus_communis	pycom05g10450
rosa_chinensis	RchiOBHm_Chr6g0247791
rosa_laevigata	RLG00000015179
rosa_multiflora	Rmu_sc0001983.1_g000011 Rmu_sc0009569.1_g000010
rosa_roxburghii	Rroxscaffold_180G00433240 Rroxscaffold_7G00213650
rosa_rugosa	Rorug05G0528900
rosa_samantha	Rh6AG043700 Rh6BG038500 Rh6CG037200 Rh6DG034300
rosa_wichuraiana	Rw6G003790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	88
AcoI	YGGCCR	1 cut(s)	294
AcuI	CTGAAG	1 cut(s)	150
AfaI	GTAC	1 cut(s)	275
AfiI	CCNNNNNNNGG	1 cut(s)	79
AgsI	TTSAA	2 cut(s)	206, 391
AluBI	AGCT	2 cut(s)	15, 321
AluI	AGCT	2 cut(s)	15, 321
Alw26I	GTCTC	1 cut(s)	55
AoxI	GGCC	2 cut(s)	81, 294
ApaI	GGGCCC	1 cut(s)	85
ApeKI	GCWGC	2 cut(s)	352, 355
AspLEI	GCGC	2 cut(s)	194, 379
AspS9I	GGNCC	2 cut(s)	81, 82
BaeGI	GKGCMC	1 cut(s)	85
BalI	TGGCCA	1 cut(s)	296
BanII	GRGCYC	2 cut(s)	38, 85
BbvI	GCAGC	2 cut(s)	339, 342
BccI	CCATC	3 cut(s)	19, 104, 286
BceAI	ACGGC	2 cut(s)	179, 351
BcoDI	GTCTC	1 cut(s)	55
BisI	GCNGC	2 cut(s)	353, 356
BlpI	GCTNAGC	1 cut(s)	11
BlsI	GCNGC	2 cut(s)	354, 357
BmgT120I	GGNCC	2 cut(s)	81, 82
BmiI	GGNNCC	1 cut(s)	83
BmsI	GCATC	1 cut(s)	339
Bpu1102I	GCTNAGC	1 cut(s)	11
BsaI	GGTCTC	1 cut(s)	55
Bsc4I	CCNNNNNNNGG	1 cut(s)	79
Bse3DI	GCAATG	2 cut(s)	297, 365
BseGI	GGATG	1 cut(s)	354
BseLI	CCNNNNNNNGG	1 cut(s)	79
BseMI	GCAATG	2 cut(s)	297, 365
BseSI	GKGCMC	1 cut(s)	85
BseXI	GCAGC	2 cut(s)	339, 342
BshFI	GGCC	2 cut(s)	83, 296
BsiSI	CCGG	1 cut(s)	43
BslI	CCNNNNNNNGG	1 cut(s)	79
BsmAI	GTCTC	1 cut(s)	55
BsmI	GAATGC	1 cut(s)	370
BsnI	GGCC	2 cut(s)	83, 296
Bso31I	GGTCTC	1 cut(s)	55
Bsp120I	GGGCCC	1 cut(s)	81
Bsp1286I	GDGCHC	2 cut(s)	38, 85
Bsp1720I	GCTNAGC	1 cut(s)	11
BspACI	CCGC	1 cut(s)	88
BspANI	GGCC	2 cut(s)	83, 296
BspLI	GGNNCC	1 cut(s)	83
BspTNI	GGTCTC	1 cut(s)	55
BsrDI	GCAATG	2 cut(s)	297, 365
Bst4CI	ACNGT	1 cut(s)	316
BstAPI	GCANNNNNTGC	1 cut(s)	180
BstC8I	GCNNGC	2 cut(s)	38, 331
BstDEI	CTNAG	1 cut(s)	11
BstF5I	GGATG	1 cut(s)	354
BstHHI	GCGC	2 cut(s)	194, 379
BstMAI	GTCTC	1 cut(s)	55
BstMWI	GCNNNNNNNGC	4 cut(s)	180, 189, 335, 374
BstSLI	GKGCMC	1 cut(s)	85
BstV1I	GCAGC	2 cut(s)	339, 342
BstXI	CCANNNNNNTGG	1 cut(s)	121
BsuRI	GGCC	2 cut(s)	83, 296
BtsCI	GGATG	1 cut(s)	354
Cac8I	GCNNGC	2 cut(s)	38, 331
CfoI	GCGC	2 cut(s)	194, 379
Cfr13I	GGNCC	2 cut(s)	81, 82
Csp6I	GTAC	1 cut(s)	274
CviAII	CATG	1 cut(s)	137
CviJI	RGCY	8 cut(s)	15, 22, 36, 46, 83, 215, 296, 321
CviKI_1	RGCY	8 cut(s)	15, 22, 36, 46, 83, 215, 296, 321
CviQI	GTAC	1 cut(s)	274
DdeI	CTNAG	1 cut(s)	11
EaeI	YGGCCR	1 cut(s)	294
EciI	GGCGGA	1 cut(s)	77
Eco24I	GRGCYC	2 cut(s)	38, 85
Eco31I	GGTCTC	1 cut(s)	55
Eco57I	CTGAAG	1 cut(s)	150
EcoO109I	RGGNCCY	1 cut(s)	82
EcoT38I	GRGCYC	2 cut(s)	38, 85
FaeI	CATG	1 cut(s)	140
FaiI	YATR	3 cut(s)	138, 249, 283
FatI	CATG	1 cut(s)	136
Fnu4HI	GCNGC	2 cut(s)	353, 356
FokI	GGATG	1 cut(s)	361
FriOI	GRGCYC	2 cut(s)	38, 85
Fsp4HI	GCNGC	2 cut(s)	353, 356
GlaI	GCGC	2 cut(s)	193, 378
GluI	GCNGC	2 cut(s)	353, 356
HaeIII	GGCC	2 cut(s)	83, 296
HapII	CCGG	1 cut(s)	43
HhaI	GCGC	2 cut(s)	194, 379
Hin1II	CATG	1 cut(s)	140
Hin6I	GCGC	2 cut(s)	192, 377
HinP1I	GCGC	2 cut(s)	192, 377
HincII	GTYRAC	1 cut(s)	199
HindII	GTYRAC	1 cut(s)	199
HinfI	GANTC	1 cut(s)	160
HpaI	GTTAAC	1 cut(s)	199
HpaII	CCGG	1 cut(s)	43
Hpy166II	GTNNAC	1 cut(s)	199
Hpy188I	TCNGA	5 cut(s)	130, 271, 288, 397, 410
Hpy188III	TCNNGA	2 cut(s)	157, 346
Hpy8I	GTNNAC	1 cut(s)	199
Hpy99I	CGWCG	1 cut(s)	241
HpyCH4III	ACNGT	1 cut(s)	316
HpyCH4IV	ACGT	1 cut(s)	230
HpyCH4V	TGCA	6 cut(s)	174, 251, 302, 329, 358, 368
HpyF10VI	GCNNNNNNNGC	4 cut(s)	180, 189, 335, 374
HpyF3I	CTNAG	1 cut(s)	11
HpySE526I	ACGT	1 cut(s)	230
Hsp92II	CATG	1 cut(s)	140
HspAI	GCGC	2 cut(s)	192, 377
KspAI	GTTAAC	1 cut(s)	199
LmnI	GCTCC	1 cut(s)	45
LpnPI	CCDG	8 cut(s)	32, 56, 127, 142, 278, 315, 331, 396
Lsp1109I	GCAGC	2 cut(s)	339, 342
LweI	GCATC	1 cut(s)	339
MaeII	ACGT	1 cut(s)	230
MboII	GAAGA	2 cut(s)	61, 91
MhlI	GDGCHC	2 cut(s)	38, 85
MlsI	TGGCCA	1 cut(s)	296
MluNI	TGGCCA	1 cut(s)	296
MlyI	GAGTC	1 cut(s)	154
MnlI	CCTC	3 cut(s)	95, 101, 135
Mox20I	TGGCCA	1 cut(s)	296
MscI	TGGCCA	1 cut(s)	296
MseI	TTAA	2 cut(s)	167, 198
Msp20I	TGGCCA	1 cut(s)	296
MspI	CCGG	1 cut(s)	43
Mva1269I	GAATGC	1 cut(s)	370
MwoI	GCNNNNNNNGC	4 cut(s)	180, 189, 335, 374
NlaIII	CATG	1 cut(s)	140
NlaIV	GGNNCC	1 cut(s)	83
PcsI	WCGNNNNNNNCGW	1 cut(s)	236
PctI	GAATGC	1 cut(s)	370
PkrI	GCNGC	2 cut(s)	354, 357
PleI	GAGTC	1 cut(s)	154
PpsI	GAGTC	1 cut(s)	154
PspN4I	GGNNCC	1 cut(s)	83
PspOMI	GGGCCC	1 cut(s)	81
PspPI	GGNCC	2 cut(s)	81, 82
RsaI	GTAC	1 cut(s)	275
RsaNI	GTAC	1 cut(s)	274
SaqAI	TTAA	2 cut(s)	167, 198
SatI	GCNGC	2 cut(s)	353, 356
Sau96I	GGNCC	2 cut(s)	81, 82
SchI	GAGTC	1 cut(s)	154
SduI	GDGCHC	2 cut(s)	38, 85
SetI	ASST	8 cut(s)	9, 17, 204, 225, 233, 279, 323, 385
SfaNI	GCATC	1 cut(s)	339
SsiI	CCGC	1 cut(s)	88
TaaI	ACNGT	1 cut(s)	316
TaiI	ACGT	1 cut(s)	233
TaqII	GACCGA	1 cut(s)	245
Tru1I	TTAA	2 cut(s)	167, 198
Tru9I	TTAA	2 cut(s)	167, 198
TseI	GCWGC	2 cut(s)	352, 355
TspDTI	ATGAA	2 cut(s)	17, 125
TspGWI	ACGGA	2 cut(s)	43, 225

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.