Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0011154

Physical Location & Seq

Genomic Coordinates Reverse (-)

2321284 .. 2324114

Gene Structure 2831 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g03000.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

ATGAAGGCGTTGAGTTGGTGGCTGATGCTGGTGGGTTCACTTAGGCTGGTCTCTGTTTGGTTCGGCTTCTTCGACATATGGGCTCTCCGTCTAGCTGTCTTCTCCAAATCCCCAATGACTGAAGTTCACGGAAGGACATTTGGTGTCTGGACTCTCCTTACTTGCACACTATGCTATCTTTGTGCCTTTAACCTTGACAACAAGCCACTGTACCTTGCTACCTTTCTATCATTCATCTATGCGCTTGGTCATTTCTTGACTGAGTACCTAATCTACCACACCATGGCCATTGCAAATCTATCAACTGTCGGCTTTTTTGCAGGCACATCGATTATATGGATGTTGTTGCAGTGGAATTCACATCAACCTCACGCTGTGTTAAAATCAGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006066 GO:0006629 GO:0006694 GO:0006696 GO:0008150 GO:0008152 GO:0008202 GO:0008204 GO:0008610 GO:0009058 GO:0009987 GO:0012505 GO:0016020 GO:0016125 GO:0016126 GO:0016128 GO:0016129 GO:0030674 GO:0031984 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044107 GO:0044108 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046165 GO:0060090 GO:0071704 GO:0097384 GO:0098827 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617 GO:1902652 GO:1902653

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Erg28

Protein Analysis

131

Amino Acids

14.96

Weight (kDa)

8.52

Isoelectric Point (pI)

30.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Erg28	PF03694	4 - 106	4.3e-29	Erg28 like protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0011154)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10030
fragaria_vesca	FvH4_2g03000 FvH4_2g03000 FvH4_2g03000
malus_domestica	MD05G1108500.v1.1 MD10G1112500.v1.1
prunus_persica	Prupe.8G152200_v2.0.a1
pyrus_communis	pycom05g10450
rosa_chinensis	RchiOBHm_Chr6g0247791
rosa_laevigata	RLG00000015179
rosa_multiflora	Rmu_sc0001983.1_g000011 Rmu_sc0009569.1_g000010
rosa_roxburghii	Rroxscaffold_180G00433240 Rroxscaffold_7G00213650
rosa_rugosa	Rorug05G0528900
rosa_samantha	Rh6AG043700 Rh6BG038500 Rh6CG037200 Rh6DG034300
rosa_wichuraiana	Rw6G003790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	283
AcoI	YGGCCR	1 cut(s)	285
AcsI	RAATTY	1 cut(s)	355
AcuI	CTGAAG	1 cut(s)	141
AdeI	CACNNNGTG	1 cut(s)	376
AfaI	GTAC	2 cut(s)	212, 266
AfiI	CCNNNNNNNGG	1 cut(s)	283
AluBI	AGCT	1 cut(s)	95
AluI	AGCT	1 cut(s)	95
Alw26I	GTCTC	1 cut(s)	55
AoxI	GGCC	1 cut(s)	285
ApoI	RAATTY	1 cut(s)	355
AspLEI	GCGC	1 cut(s)	244
BalI	TGGCCA	1 cut(s)	287
BanII	GRGCYC	1 cut(s)	85
BbsI	GAAGAC	1 cut(s)	91
BcgI	CGANNNNNNTGC	2 cut(s)	309, 343
BcoDI	GTCTC	1 cut(s)	55
BfaI	CTAG	1 cut(s)	92
BmsI	GCATC	1 cut(s)	15
BpiI	GAAGAC	1 cut(s)	91
Bsa29I	ATCGAT	1 cut(s)	329
BsaI	GGTCTC	1 cut(s)	55
BsaJI	CCNNGG	1 cut(s)	282
Bsc4I	CCNNNNNNNGG	1 cut(s)	283
Bse3DI	GCAATG	1 cut(s)	288
BseCI	ATCGAT	1 cut(s)	329
BseDI	CCNNGG	1 cut(s)	282
BseGI	GGATG	1 cut(s)	345
BseLI	CCNNNNNNNGG	1 cut(s)	283
BseMI	GCAATG	1 cut(s)	288
BseMII	CTCAG	1 cut(s)	252
BshFI	GGCC	1 cut(s)	287
BshVI	ATCGAT	1 cut(s)	329
BslI	CCNNNNNNNGG	1 cut(s)	283
BsmAI	GTCTC	1 cut(s)	55
BsnI	GGCC	1 cut(s)	287
Bso31I	GGTCTC	1 cut(s)	55
Bsp1286I	GDGCHC	1 cut(s)	85
Bsp19I	CCATGG	1 cut(s)	282
BspANI	GGCC	1 cut(s)	287
BspCNI	CTCAG	1 cut(s)	253
BspDI	ATCGAT	1 cut(s)	329
BspTNI	GGTCTC	1 cut(s)	55
BsrDI	GCAATG	1 cut(s)	288
BssECI	CCNNGG	1 cut(s)	282
BssT1I	CCWWGG	1 cut(s)	282
Bst4CI	ACNGT	2 cut(s)	210, 307
BstAPI	GCANNNNNTGC	1 cut(s)	171
BstC8I	GCNNGC	1 cut(s)	322
BstDEI	CTNAG	2 cut(s)	41, 261
BstDSI	CCRYGG	1 cut(s)	282
BstF5I	GGATG	1 cut(s)	345
BstHHI	GCGC	1 cut(s)	244
BstMAI	GTCTC	1 cut(s)	55
BstMWI	GCNNNNNNNGC	1 cut(s)	171
BstV2I	GAAGAC	1 cut(s)	91
Bsu15I	ATCGAT	1 cut(s)	329
BsuRI	GGCC	1 cut(s)	287
BsuTUI	ATCGAT	1 cut(s)	329
BtgI	CCRYGG	1 cut(s)	282
BtsCI	GGATG	1 cut(s)	345
BtsI	GCAGTG	1 cut(s)	356
BtsIMutI	CAGTG	2 cut(s)	206, 356
Cac8I	GCNNGC	1 cut(s)	322
CfoI	GCGC	1 cut(s)	244
ClaI	ATCGAT	1 cut(s)	329
Csp6I	GTAC	2 cut(s)	211, 265
CviAII	CATG	1 cut(s)	283
CviJI	RGCY	8 cut(s)	22, 46, 66, 83, 95, 205, 287, 312
CviKI_1	RGCY	8 cut(s)	22, 46, 66, 83, 95, 205, 287, 312
CviQI	GTAC	2 cut(s)	211, 265
DdeI	CTNAG	2 cut(s)	41, 261
DraIII	CACNNNGTG	1 cut(s)	376
EaeI	YGGCCR	1 cut(s)	285
Eco130I	CCWWGG	1 cut(s)	282
Eco24I	GRGCYC	1 cut(s)	85
Eco31I	GGTCTC	1 cut(s)	55
Eco57I	CTGAAG	1 cut(s)	141
EcoRI	GAATTC	1 cut(s)	355
EcoT14I	CCWWGG	1 cut(s)	282
EcoT38I	GRGCYC	1 cut(s)	85
ErhI	CCWWGG	1 cut(s)	282
FaeI	CATG	1 cut(s)	286
FaiI	YATR	7 cut(s)	77, 79, 172, 240, 284, 335, 337
FatI	CATG	1 cut(s)	282
FauNDI	CATATG	1 cut(s)	77
FokI	GGATG	1 cut(s)	352
FriOI	GRGCYC	1 cut(s)	85
FspBI	CTAG	1 cut(s)	92
GlaI	GCGC	1 cut(s)	243
HaeIII	GGCC	1 cut(s)	287
HhaI	GCGC	1 cut(s)	244
Hin1II	CATG	1 cut(s)	286
Hin6I	GCGC	1 cut(s)	242
HinP1I	GCGC	1 cut(s)	242
HinfI	GANTC	1 cut(s)	151
Hpy166II	GTNNAC	2 cut(s)	38, 127
Hpy188I	TCNGA	1 cut(s)	388
Hpy188III	TCNNGA	2 cut(s)	148, 256
Hpy8I	GTNNAC	2 cut(s)	38, 127
HpyAV	CCTTC	1 cut(s)	126
HpyCH4III	ACNGT	2 cut(s)	210, 307
HpyCH4V	TGCA	4 cut(s)	165, 293, 320, 349
HpyF10VI	GCNNNNNNNGC	1 cut(s)	171
HpyF3I	CTNAG	2 cut(s)	41, 261
Hsp92II	CATG	1 cut(s)	286
HspAI	GCGC	1 cut(s)	242
LpnPI	CCDG	4 cut(s)	14, 32, 133, 306
LweI	GCATC	1 cut(s)	15
MaeI	CTAG	1 cut(s)	92
MboII	GAAGA	2 cut(s)	61, 91
MhlI	GDGCHC	1 cut(s)	85
MlsI	TGGCCA	1 cut(s)	287
MluCI	AATT	1 cut(s)	355
MluNI	TGGCCA	1 cut(s)	287
MlyI	GAGTC	1 cut(s)	145
MnlI	CCTC	1 cut(s)	378
Mox20I	TGGCCA	1 cut(s)	287
MscI	TGGCCA	1 cut(s)	287
MseI	TTAA	2 cut(s)	189, 380
Msp20I	TGGCCA	1 cut(s)	287
MwoI	GCNNNNNNNGC	1 cut(s)	171
NcoI	CCATGG	1 cut(s)	282
NdeI	CATATG	1 cut(s)	77
NlaIII	CATG	1 cut(s)	286
PcsI	WCGNNNNNNNCGW	1 cut(s)	69
PflMI	CCANNNNNTGG	1 cut(s)	283
PleI	GAGTC	1 cut(s)	145
PpsI	GAGTC	1 cut(s)	145
RsaI	GTAC	2 cut(s)	212, 266
RsaNI	GTAC	2 cut(s)	211, 265
SaqAI	TTAA	2 cut(s)	189, 380
SchI	GAGTC	1 cut(s)	145
SduI	GDGCHC	1 cut(s)	85
SetI	ASST	6 cut(s)	97, 195, 216, 224, 270, 370
SfaNI	GCATC	1 cut(s)	15
Sse9I	AATT	1 cut(s)	355
SspMI	CTAG	1 cut(s)	92
StyI	CCWWGG	1 cut(s)	282
TaaI	ACNGT	2 cut(s)	210, 307
TaqI	TCGA	2 cut(s)	72, 329
TasI	AATT	1 cut(s)	355
Tru1I	TTAA	2 cut(s)	189, 380
Tru9I	TTAA	2 cut(s)	189, 380
TscAI	CASTG	2 cut(s)	213, 356
TspDTI	ATGAA	2 cut(s)	17, 223
TspGWI	ACGGA	2 cut(s)	77, 144
TspRI	CASTG	2 cut(s)	213, 356
Van91I	CCANNNNNTGG	1 cut(s)	283
XapI	RAATTY	1 cut(s)	355
XspI	CTAG	1 cut(s)	92

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.